Wall clock time and date at job start Mon Mar 30 2020 01:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86807 * 119.99793 * 2 1 4 4 H 1.48500 * 109.46820 * 273.42760 * 3 2 1 5 5 H 1.48503 * 109.46854 * 33.42977 * 3 2 1 6 6 H 1.48497 * 109.47076 * 153.42791 * 3 2 1 7 7 C 1.38897 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99854 * 342.55557 * 7 2 1 9 9 N 1.37211 * 119.99650 * 162.55273 * 7 2 1 10 10 C 1.34778 * 119.99761 * 125.65938 * 9 7 2 11 11 O 1.21273 * 120.00224 * 184.42535 * 10 9 7 12 12 C 1.50697 * 119.99944 * 4.42132 * 10 9 7 13 13 H 1.08994 * 110.50862 * 329.65446 * 12 10 9 14 14 C 1.54097 * 110.56443 * 92.39620 * 12 10 9 15 15 O 1.46046 * 103.84505 * 118.53150 * 14 12 10 16 16 C 1.33771 * 109.50657 * 0.12096 * 15 14 12 17 17 O 1.21511 * 123.06587 * 179.97438 * 16 15 14 18 18 N 1.33997 * 113.86047 * 359.92054 * 16 15 14 19 19 C 1.39426 * 120.00396 * 305.65859 * 9 7 2 20 20 C 1.39063 * 119.69395 * 5.00074 * 19 9 7 21 21 C 1.38384 * 119.09676 * 179.97438 * 20 19 9 22 22 C 1.38821 * 118.49222 * 0.02562 * 21 20 19 23 23 C 1.38147 * 119.31689 * 359.97438 * 22 21 20 24 24 N 1.31888 * 120.84355 * 0.27485 * 23 22 21 25 25 H 0.96995 * 120.00289 * 359.97438 * 1 2 3 26 26 H 1.08994 * 110.52087 * 237.20583 * 14 12 10 27 27 H 1.09005 * 110.51977 * 359.94182 * 14 12 10 28 28 H 0.97008 * 125.56033 * 180.02562 * 18 16 15 29 29 H 1.08000 * 120.45710 * 359.97438 * 20 19 9 30 30 H 1.07996 * 120.75381 * 179.97438 * 21 20 19 31 31 H 1.08005 * 120.34353 * 179.97438 * 22 21 20 32 32 H 1.07994 * 119.58189 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4230 2.0883 -1.3976 5 1 1.4836 2.6307 0.7713 6 1 3.5800 1.4205 0.6263 7 6 2.0086 -1.2029 0.0005 8 1 1.5059 -2.1165 0.2813 9 7 3.3334 -1.2302 -0.3557 10 6 4.2438 -1.7737 0.4763 11 8 5.4234 -1.7264 0.1987 12 6 3.7961 -2.4400 1.7516 13 1 2.8849 -1.9739 2.1264 14 6 3.5790 -3.9490 1.5266 15 8 4.5391 -4.5786 2.4291 16 6 5.2182 -3.6335 3.0888 17 8 6.0816 -3.8857 3.9058 18 7 4.8602 -2.3834 2.7655 19 6 3.7377 -0.6959 -1.5784 20 6 2.8116 -0.0441 -2.3854 21 6 3.2264 0.4820 -3.5962 22 6 4.5583 0.3370 -3.9598 23 6 5.4238 -0.3225 -3.1087 24 7 4.9987 -0.8180 -1.9627 25 1 -0.4850 0.8400 0.0004 26 1 2.5603 -4.2321 1.7912 27 1 3.7942 -4.2158 0.4919 28 1 5.2410 -1.5731 3.1389 29 1 1.7825 0.0503 -2.0715 30 1 2.5297 0.9931 -4.2440 31 1 4.9143 0.7357 -4.8983 32 1 6.4608 -0.4382 -3.3874 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585109944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:11 Heat of formation + Delta-G solvation = -54.436176 kcal Electronic energy + Delta-G solvation = -21840.929860 eV Core-core repulsion = 18381.577550 eV Total energy + Delta-G solvation = -3459.352309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.89045 -41.67400 -39.82530 -38.29870 -37.13196 -35.72750 -34.33039 -33.16601 -31.75045 -30.32632 -27.30566 -26.03255 -24.26650 -23.63375 -23.49782 -21.37043 -20.32856 -19.17437 -18.88404 -17.93021 -17.69460 -17.32448 -17.04583 -16.56590 -16.24760 -15.87249 -15.66493 -15.30549 -15.15848 -14.90997 -14.78409 -14.44702 -14.11371 -13.89511 -13.45109 -13.17258 -13.00856 -12.36585 -12.14966 -12.02806 -11.91318 -11.54693 -11.40430 -10.95516 -10.52556 -10.47217 -9.86117 -9.03234 -8.61652 -6.51850 0.19601 0.46348 1.17392 1.28873 1.35864 1.38643 1.57910 1.69898 2.04118 2.12307 2.55658 2.70371 3.06054 3.24534 3.48038 3.79084 3.90724 4.06424 4.14773 4.28701 4.39510 4.44777 4.53251 4.54929 4.95867 5.15838 5.32752 5.44112 5.62399 5.79577 6.00416 6.06465 6.15141 6.71723 6.88994 6.95227 7.19268 7.64297 8.43740 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.007504 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.182662 B = 3730.650870 C = 4552.242878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.077 3.923 3 Si 0.890 3.110 4 H -0.247 1.247 5 H -0.275 1.275 6 H -0.291 1.291 7 C -0.373 4.373 8 H 0.116 0.884 9 N -0.410 5.410 10 C 0.479 3.521 11 O -0.532 6.532 12 C 0.092 3.908 13 H 0.157 0.843 14 C 0.066 3.934 15 O -0.334 6.334 16 C 0.653 3.347 17 O -0.568 6.568 18 N -0.702 5.702 19 C 0.322 3.678 20 C -0.215 4.215 21 C -0.062 4.062 22 C -0.204 4.204 23 C 0.102 3.898 24 N -0.525 5.525 25 H 0.287 0.713 26 H 0.161 0.839 27 H 0.105 0.895 28 H 0.441 0.559 29 H 0.140 0.860 30 H 0.161 0.839 31 H 0.171 0.829 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 1.330 -4.808 4.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.171 1.171 5 H -0.201 1.201 6 H -0.217 1.217 7 C -0.500 4.500 8 H 0.134 0.866 9 N -0.125 5.125 10 C 0.266 3.734 11 O -0.407 6.407 12 C -0.016 4.016 13 H 0.174 0.826 14 C -0.008 4.008 15 O -0.243 6.243 16 C 0.406 3.594 17 O -0.457 6.457 18 N -0.373 5.373 19 C 0.094 3.906 20 C -0.238 4.238 21 C -0.088 4.088 22 C -0.225 4.225 23 C -0.056 4.056 24 N -0.241 5.241 25 H 0.098 0.902 26 H 0.179 0.821 27 H 0.123 0.877 28 H 0.285 0.715 29 H 0.157 0.843 30 H 0.179 0.821 31 H 0.189 0.811 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.520 0.433 -3.940 4.246 hybrid contribution -0.263 1.888 -0.350 1.938 sum 1.257 2.321 -4.291 5.038 Atomic orbital electron populations 1.69729 1.06611 1.29745 1.43298 1.25638 0.95171 0.99692 0.92823 0.86784 0.78963 0.82468 0.80228 1.17068 1.20087 1.21741 1.19027 0.82781 0.96751 1.51399 0.86628 1.41555 1.08362 1.51196 1.11391 1.21405 0.85526 0.80843 0.85586 1.90711 1.17761 1.57836 1.74439 1.22360 0.93400 0.98578 0.87303 0.82571 1.24520 0.94961 0.86477 0.94836 1.87259 1.50849 1.32516 1.53715 1.18422 0.80262 0.80649 0.80020 1.91000 1.33676 1.83826 1.37167 1.45703 1.41140 1.08046 1.42387 1.19433 0.89605 0.93687 0.87898 1.21983 1.01563 1.03085 0.97187 1.21791 0.97102 0.95504 0.94402 1.22317 0.93791 1.03549 1.02850 1.23145 1.01252 0.92859 0.88323 1.67646 1.15259 1.22430 1.18732 0.90177 0.82120 0.87661 0.71510 0.84287 0.82108 0.81140 0.80714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -39.40 13.96 21.65 0.30 -39.10 16 2 C 0.08 3.42 3.76 84.91 0.32 3.73 16 3 Si 0.89 37.46 24.87 68.60 1.71 39.17 16 4 H -0.25 -9.95 6.14 99.48 0.61 -9.33 16 5 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.37 -16.04 7.59 84.01 0.64 -15.40 16 8 H 0.12 4.85 7.96 -2.91 -0.02 4.82 16 9 N -0.41 -17.79 2.10 -464.38 -0.97 -18.77 16 10 C 0.48 19.96 6.64 87.66 0.58 20.54 16 11 O -0.53 -25.43 14.99 -3.01 -0.05 -25.47 16 12 C 0.09 3.01 3.52 44.50 0.16 3.16 16 13 H 0.16 4.65 7.00 -2.39 -0.02 4.63 16 14 C 0.07 1.83 7.89 72.35 0.57 2.40 16 15 O -0.33 -11.13 11.10 -47.31 -0.53 -11.66 16 16 C 0.65 24.12 9.16 129.91 1.19 25.31 16 17 O -0.57 -24.47 18.04 19.65 0.35 -24.11 16 18 N -0.70 -23.17 5.73 -573.43 -3.28 -26.46 16 19 C 0.32 14.12 6.06 132.91 0.81 14.92 16 20 C -0.21 -8.51 6.08 22.50 0.14 -8.38 16 21 C -0.06 -1.93 10.16 22.44 0.23 -1.70 16 22 C -0.20 -5.61 10.11 22.39 0.23 -5.38 16 23 C 0.10 3.39 11.18 84.66 0.95 4.34 16 24 N -0.52 -22.62 7.92 -192.96 -1.53 -24.14 16 25 H 0.29 12.36 8.31 -92.71 -0.77 11.59 16 26 H 0.16 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.11 2.95 7.72 -2.38 -0.02 2.94 16 28 H 0.44 13.38 8.96 -92.70 -0.83 12.55 16 29 H 0.14 5.86 4.81 -2.91 -0.01 5.84 16 30 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.18 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -64.95 278.29 2.06 -62.89 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.26 Total: 24.12 kcal Atomic # 6 Polarization: 37.74 SS G_CDS: 5.80 Total: 43.54 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -5.49 Total: -108.46 kcal Atomic # 8 Polarization: -61.03 SS G_CDS: -0.22 Total: -61.25 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 1.71 Total: 39.17 kcal Total: -64.95 2.06 -62.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585109944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.449 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds