Wall clock time and date at job start Mon Mar 30 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.47075 * 136.05566 * 359.63328 * 14 12 2 16 16 C 1.53753 * 87.88663 * 152.96204 * 15 14 12 17 17 N 1.46502 * 114.39251 * 272.67285 * 16 15 14 18 18 S 1.65606 * 120.00176 * 238.59349 * 17 16 15 19 19 N 1.65593 * 107.21977 * 64.99521 * 18 17 16 20 20 O 1.42099 * 106.40424 * 178.54058 * 18 17 16 21 21 O 1.42106 * 106.39656 * 311.45705 * 18 17 16 22 22 C 1.47064 * 136.06258 * 179.97438 * 14 12 2 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09005 * 113.46071 * 267.69171 * 15 14 12 28 28 H 1.08995 * 113.46902 * 38.12659 * 15 14 12 29 29 H 1.09002 * 114.08489 * 139.78369 * 16 15 14 30 30 H 0.97003 * 119.99982 * 58.58468 * 17 16 15 31 31 H 0.97000 * 120.00307 * 359.97438 * 19 18 17 32 32 H 0.97001 * 120.00139 * 180.02562 * 19 18 17 33 33 H 1.09008 * 113.46675 * 321.86709 * 22 14 12 34 34 H 1.08996 * 113.46884 * 92.30067 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 0.9104 0.8651 -2.9893 16 6 1.8014 0.8261 -4.2417 17 7 3.0203 1.6329 -4.1424 18 16 3.3023 2.8450 -5.2349 19 7 2.1258 3.9889 -5.0126 20 8 4.5292 3.4518 -4.8533 21 8 3.0794 2.2850 -6.5218 22 6 1.9863 -0.6444 -3.8434 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 0.7089 1.1611 3.4845 27 1 -0.1284 0.6007 -3.1873 28 1 1.0092 1.7848 -2.4128 29 1 1.2608 0.9715 -5.1770 30 1 3.6621 1.4571 -3.4366 31 1 1.4462 3.8599 -4.3325 32 1 2.1157 4.7877 -5.5629 33 1 3.0019 -1.0105 -3.9946 34 1 1.2315 -1.3070 -4.2668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586444614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:12 Heat of formation + Delta-G solvation = -75.860048 kcal Electronic energy + Delta-G solvation = -20046.756345 eV Core-core repulsion = 16721.918979 eV Total energy + Delta-G solvation = -3324.837367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21043 -37.51959 -37.22408 -35.98795 -33.80794 -33.54461 -33.31819 -30.70396 -28.17759 -25.97566 -25.15184 -22.96442 -21.07228 -20.21869 -18.88366 -18.39004 -17.57406 -16.53791 -16.42127 -16.20824 -15.83270 -15.35757 -15.20074 -14.66531 -14.23263 -13.35406 -13.12474 -12.78916 -12.61483 -12.36399 -12.27168 -12.18617 -12.06214 -11.98520 -11.51195 -11.26818 -11.03049 -10.75987 -10.68932 -10.68114 -10.33601 -10.00569 -9.75864 -9.02976 -8.69873 -8.40772 -8.27385 -6.08606 -4.11876 0.42443 2.69720 3.26666 3.30929 3.36098 3.37014 3.45388 3.62186 4.14027 4.41782 4.43128 4.75721 4.87063 5.08995 5.25391 5.38473 5.51223 5.57068 5.76016 5.81199 6.07852 6.40388 6.59545 6.69197 6.77746 6.83313 6.88667 7.41863 7.69549 7.96243 8.12599 8.37624 8.96754 9.12049 9.53967 10.98948 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029333 B = 0.004351 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.312042 B = 6433.243375 C = 6647.644219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.038 3.962 3 H 0.051 0.949 4 C -0.503 4.503 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.287 1.287 12 C 0.548 3.452 13 O -0.539 6.539 14 N -0.654 5.654 15 C 0.088 3.912 16 C 0.102 3.898 17 N -1.096 6.096 18 S 2.805 3.195 19 N -1.263 6.263 20 O -0.984 6.984 21 O -0.985 6.985 22 C 0.093 3.907 23 H 0.029 0.971 24 H 0.093 0.907 25 H 0.014 0.986 26 H 0.261 0.739 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.427 0.573 31 H 0.416 0.584 32 H 0.419 0.581 33 H 0.080 0.920 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 6.745 -15.556 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.017 3.983 3 H 0.069 0.931 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.213 1.213 12 C 0.342 3.658 13 O -0.414 6.414 14 N -0.393 5.393 15 C -0.038 4.038 16 C -0.008 4.008 17 N -0.857 5.857 18 S 2.808 3.192 19 N -0.937 5.937 20 O -0.966 6.966 21 O -0.967 6.967 22 C -0.032 4.032 23 H 0.049 0.951 24 H 0.111 0.889 25 H 0.033 0.967 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.143 0.857 30 H 0.263 0.737 31 H 0.244 0.756 32 H 0.248 0.752 33 H 0.098 0.902 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.028 6.153 -15.926 17.194 hybrid contribution -0.215 -0.219 1.537 1.568 sum -2.243 5.935 -14.389 15.725 Atomic orbital electron populations 1.21758 0.96465 0.99775 1.00982 1.18821 0.94185 0.96720 0.88612 0.93107 1.21150 1.31153 1.12882 0.88975 0.90826 1.24943 0.95056 0.95032 0.99128 1.69864 1.37078 1.23025 1.23608 0.86433 0.79486 0.79242 0.81947 1.20642 1.19719 1.21251 1.21823 0.78137 0.83636 0.82229 1.90564 1.38547 1.26901 1.85416 1.50014 1.53034 1.31853 1.04435 1.23508 0.95997 0.92152 0.92110 1.22218 0.85890 0.93457 0.99197 1.55292 1.31170 1.49387 1.49844 1.01340 0.72619 0.72389 0.72836 1.53431 1.49367 1.38953 1.51966 1.93664 1.43810 1.76134 1.83015 1.93643 1.85687 1.77675 1.39663 1.23158 1.02750 0.94731 0.82560 0.95150 0.88862 0.96722 0.92921 0.88878 0.89731 0.85733 0.73744 0.75648 0.75189 0.90172 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.85 37.16 0.33 -2.58 16 2 C 0.04 0.91 2.52 -92.93 -0.23 0.68 16 3 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 4 C -0.50 -14.08 8.37 -34.44 -0.29 -14.37 16 5 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.55 12.23 7.40 -10.99 -0.08 12.15 16 13 O -0.54 -14.08 16.23 5.56 0.09 -13.99 16 14 N -0.65 -10.53 3.64 -185.09 -0.67 -11.21 16 15 C 0.09 0.96 6.54 -8.37 -0.05 0.90 16 16 C 0.10 0.93 4.79 -67.69 -0.32 0.60 16 17 N -1.10 -10.59 5.89 -4.62 -0.03 -10.62 16 18 S 2.81 27.05 6.70 -107.50 -0.72 26.33 16 19 N -1.26 -7.48 9.58 60.35 0.58 -6.90 16 20 O -0.98 -13.53 18.14 -57.17 -1.04 -14.57 16 21 O -0.98 -12.24 17.70 -57.17 -1.01 -13.25 16 22 C 0.09 1.13 8.41 -8.53 -0.07 1.06 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 25 H 0.01 0.25 6.33 -51.93 -0.33 -0.08 16 26 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 27 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.13 0.78 7.82 -51.93 -0.41 0.37 16 30 H 0.43 4.60 8.95 -34.48 -0.31 4.29 16 31 H 0.42 1.73 8.96 -34.47 -0.31 1.42 16 32 H 0.42 1.85 8.96 -34.47 -0.31 1.54 16 33 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 303.23 15.07 4.57 4.57 Total: -1.00 -37.48 303.23 -7.45 -44.93 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.00 Total: 2.16 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.82 Total: -0.04 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.51 Total: -52.71 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.96 Total: -41.81 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 27.05 SS G_CDS: -0.72 Total: 26.33 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -37.48 -7.45 -44.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586444614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.931 kcal (2) G-P(sol) polarization free energy of solvation -37.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds