Wall clock time and date at job start Mon Mar 30 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.47075 * 136.05566 * 359.63328 * 14 12 2 16 16 C 1.53753 * 87.88663 * 152.96204 * 15 14 12 17 17 N 1.46502 * 114.39251 * 272.67285 * 16 15 14 18 18 S 1.65606 * 120.00176 * 238.59349 * 17 16 15 19 19 N 1.65593 * 107.21977 * 64.99521 * 18 17 16 20 20 O 1.42099 * 106.40424 * 178.54058 * 18 17 16 21 21 O 1.42106 * 106.39656 * 311.45705 * 18 17 16 22 22 C 1.47064 * 136.06258 * 179.97438 * 14 12 2 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09005 * 113.46071 * 267.69171 * 15 14 12 28 28 H 1.08995 * 113.46902 * 38.12659 * 15 14 12 29 29 H 1.09002 * 114.08489 * 139.78369 * 16 15 14 30 30 H 0.97003 * 119.99982 * 58.58468 * 17 16 15 31 31 H 0.97000 * 120.00307 * 359.97438 * 19 18 17 32 32 H 0.97001 * 120.00139 * 180.02562 * 19 18 17 33 33 H 1.09008 * 113.46675 * 321.86709 * 22 14 12 34 34 H 1.08996 * 113.46884 * 92.30067 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 0.9104 0.8651 -2.9893 16 6 1.8014 0.8261 -4.2417 17 7 3.0203 1.6329 -4.1424 18 16 3.3023 2.8450 -5.2349 19 7 2.1258 3.9889 -5.0126 20 8 4.5292 3.4518 -4.8533 21 8 3.0794 2.2850 -6.5218 22 6 1.9863 -0.6444 -3.8434 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 0.7089 1.1611 3.4845 27 1 -0.1284 0.6007 -3.1873 28 1 1.0092 1.7848 -2.4128 29 1 1.2608 0.9715 -5.1770 30 1 3.6621 1.4571 -3.4366 31 1 1.4462 3.8599 -4.3325 32 1 2.1157 4.7877 -5.5629 33 1 3.0019 -1.0105 -3.9946 34 1 1.2315 -1.3070 -4.2668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586444614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:12 Heat of formation + Delta-G solvation = -110.081950 kcal Electronic energy + Delta-G solvation = -20048.240318 eV Core-core repulsion = 16721.918979 eV Total energy + Delta-G solvation = -3326.321340 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.39177 -39.03919 -38.17627 -36.90587 -35.77396 -34.51210 -33.92560 -32.59671 -29.47223 -27.30101 -26.78934 -24.50905 -22.36417 -20.99966 -19.93878 -19.36078 -18.35872 -18.30615 -17.62542 -17.22219 -17.09150 -16.87222 -16.29810 -15.93590 -15.77483 -14.80302 -14.52367 -14.28254 -13.88912 -13.44738 -13.26605 -13.19008 -13.16369 -13.01786 -12.96016 -12.92461 -12.60455 -12.57315 -12.21428 -12.20714 -11.98952 -11.25826 -11.04354 -10.63716 -10.59091 -10.25200 -9.59086 -8.16704 -6.26577 -0.36453 1.39243 1.40276 1.51739 1.88074 1.96587 2.10611 2.44575 2.62426 3.12912 3.26009 3.63456 3.81518 4.09868 4.22269 4.29165 4.61453 4.68989 4.75812 4.78309 4.94907 4.98659 5.17223 5.21049 5.42383 5.52163 5.73291 5.83188 5.97755 6.24023 6.43323 6.76444 6.90532 7.40142 7.50336 8.88740 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029333 B = 0.004351 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.312042 B = 6433.243375 C = 6647.644219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.033 3.967 3 H 0.039 0.961 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.545 3.455 13 O -0.596 6.596 14 N -0.659 5.659 15 C 0.081 3.919 16 C 0.122 3.878 17 N -1.099 6.099 18 S 2.834 3.166 19 N -1.246 6.246 20 O -1.026 7.026 21 O -1.009 7.009 22 C 0.084 3.916 23 H 0.017 0.983 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.265 0.735 27 H 0.130 0.870 28 H 0.091 0.909 29 H 0.170 0.830 30 H 0.421 0.579 31 H 0.428 0.572 32 H 0.429 0.571 33 H 0.065 0.935 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 7.798 -16.937 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.012 3.988 3 H 0.057 0.943 4 C -0.571 4.571 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.337 3.663 13 O -0.476 6.476 14 N -0.395 5.395 15 C -0.043 4.043 16 C 0.013 3.987 17 N -0.859 5.859 18 S 2.837 3.163 19 N -0.926 5.926 20 O -1.009 7.009 21 O -0.991 6.991 22 C -0.040 4.040 23 H 0.036 0.964 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.147 0.853 28 H 0.109 0.891 29 H 0.187 0.813 30 H 0.256 0.744 31 H 0.258 0.742 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.758 7.266 -17.364 19.195 hybrid contribution 0.270 -0.487 1.873 1.954 sum -3.488 6.779 -15.492 17.266 Atomic orbital electron populations 1.21548 0.94747 0.99178 1.01958 1.18711 0.95511 0.95642 0.88924 0.94301 1.21298 1.31689 1.12717 0.91366 0.93816 1.25541 0.95187 0.95728 1.01227 1.69930 1.37101 1.23363 1.24305 0.85641 0.78571 0.78629 0.79305 1.19922 1.20680 1.19848 1.21243 0.78107 0.82995 0.83909 1.90521 1.41141 1.29198 1.86728 1.49860 1.52570 1.32924 1.04162 1.24011 0.97563 0.90631 0.92119 1.22285 0.85245 0.90872 1.00288 1.55273 1.31444 1.49730 1.49416 1.00275 0.72061 0.72098 0.71870 1.53013 1.48612 1.38526 1.52438 1.93616 1.46720 1.77030 1.83537 1.93614 1.86014 1.78369 1.41129 1.23582 1.03075 0.97513 0.79880 0.96369 0.91236 0.92225 0.92559 0.85270 0.89083 0.81326 0.74402 0.74176 0.73931 0.91629 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 8.85 71.98 0.64 -4.41 16 2 C 0.03 1.63 2.52 -12.29 -0.03 1.60 16 3 H 0.04 1.97 8.14 -2.39 -0.02 1.96 16 4 C -0.53 -30.77 8.37 25.60 0.21 -30.56 16 5 H 0.04 2.74 6.75 -2.91 -0.02 2.72 16 6 C 0.02 1.25 5.30 84.66 0.45 1.70 16 7 N -0.91 -49.92 11.32 21.45 0.24 -49.67 16 8 Si 0.95 44.77 29.54 68.60 2.03 46.80 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 C 0.54 24.62 7.40 87.66 0.65 25.26 16 13 O -0.60 -32.36 16.23 -3.03 -0.05 -32.41 16 14 N -0.66 -20.15 3.64 -857.91 -3.12 -23.27 16 15 C 0.08 1.43 6.54 83.26 0.54 1.97 16 16 C 0.12 1.76 4.79 45.54 0.22 1.98 16 17 N -1.10 -18.86 5.89 -168.53 -0.99 -19.85 16 18 S 2.83 48.85 6.70 -56.49 -0.38 48.47 16 19 N -1.25 -10.91 9.58 37.02 0.35 -10.55 16 20 O -1.03 -27.40 18.14 -128.00 -2.32 -29.72 16 21 O -1.01 -22.64 17.70 -128.00 -2.27 -24.90 16 22 C 0.08 1.82 8.41 83.17 0.70 2.52 16 23 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 3.36 6.07 -2.39 -0.01 3.35 16 25 H 0.06 1.97 6.33 -2.38 -0.02 1.95 16 26 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 27 H 0.13 1.50 8.10 -2.38 -0.02 1.48 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.17 1.14 7.82 -2.39 -0.02 1.12 16 30 H 0.42 8.71 8.95 -96.74 -0.87 7.84 16 31 H 0.43 1.92 8.96 -96.75 -0.87 1.05 16 32 H 0.43 2.50 8.96 -96.75 -0.87 1.63 16 33 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.12 1.96 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -84.58 303.23 -4.56 -89.14 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -1.43 Total: 5.91 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 3.38 Total: 0.07 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -3.52 Total: -103.35 kcal Atomic # 8 Polarization: -82.40 SS G_CDS: -4.64 Total: -87.03 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 48.85 SS G_CDS: -0.38 Total: 48.47 kcal Total: -84.58 -4.56 -89.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586444614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.946 kcal (2) G-P(sol) polarization free energy of solvation -84.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds