Wall clock time and date at job start Mon Mar 30 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47337 * 2 1 4 4 C 1.50705 * 109.46824 * 239.99846 * 2 1 3 5 5 H 1.07995 * 120.00106 * 245.75931 * 4 2 1 6 6 C 1.37879 * 119.99780 * 65.76677 * 4 2 1 7 7 N 1.31509 * 119.99797 * 195.29007 * 6 4 2 8 8 Si 1.86800 * 120.00265 * 15.28328 * 6 4 2 9 9 H 1.48494 * 109.47351 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47187 * 300.00407 * 8 6 4 11 11 H 1.48498 * 109.46965 * 60.00124 * 8 6 4 12 12 C 1.50702 * 109.47111 * 120.00228 * 2 1 3 13 13 O 1.21277 * 119.99895 * 107.54425 * 12 2 1 14 14 N 1.34776 * 119.99670 * 287.55056 * 12 2 1 15 15 C 1.47073 * 136.05458 * 184.72434 * 14 12 2 16 16 C 1.53747 * 87.88719 * 152.95771 * 15 14 12 17 17 N 1.46506 * 114.39789 * 272.67613 * 16 15 14 18 18 S 1.65601 * 119.99964 * 238.58873 * 17 16 15 19 19 N 1.65605 * 107.21771 * 64.99538 * 18 17 16 20 20 O 1.42097 * 106.40443 * 178.53444 * 18 17 16 21 21 O 1.42101 * 106.40213 * 311.45588 * 18 17 16 22 22 C 1.47065 * 136.06041 * 5.08445 * 14 12 2 23 23 H 1.08999 * 109.47061 * 65.33977 * 1 2 3 24 24 H 1.08993 * 109.47270 * 185.34291 * 1 2 3 25 25 H 1.09001 * 109.46861 * 305.34644 * 1 2 3 26 26 H 0.97007 * 120.00149 * 354.94308 * 7 6 4 27 27 H 1.08997 * 113.46214 * 267.69169 * 15 14 12 28 28 H 1.09004 * 113.46501 * 38.12735 * 15 14 12 29 29 H 1.08998 * 114.26923 * 139.79248 * 16 15 14 30 30 H 0.96998 * 119.99793 * 58.58400 * 17 16 15 31 31 H 0.96995 * 119.99902 * 359.97438 * 19 18 17 32 32 H 0.97001 * 119.99908 * 179.97438 * 19 18 17 33 33 H 1.08993 * 113.46655 * 321.87271 * 22 14 12 34 34 H 1.08997 * 113.46457 * 92.31131 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5743 -1.6396 -1.1342 6 6 1.8000 -0.1742 -2.4793 7 7 1.9606 -0.9155 -3.5535 8 14 1.2568 1.6054 -2.6453 9 1 1.0749 1.9355 -4.0816 10 1 -0.0281 1.7999 -1.9265 11 1 2.2913 2.4953 -2.0595 12 6 2.0324 -0.7105 1.2304 13 8 2.5330 -1.8108 1.1334 14 7 1.9251 -0.1230 2.4387 15 6 2.3546 -0.4358 3.8101 16 6 2.3675 1.0759 4.0900 17 7 3.6288 1.7424 3.7563 18 16 4.4690 2.5586 4.9269 19 7 4.9671 1.4406 6.0425 20 8 5.6455 3.0554 4.3038 21 8 3.5280 3.3934 5.5880 22 6 1.3216 1.1096 2.9671 23 1 -0.3633 0.4288 -0.9339 24 1 -0.3633 -1.0231 0.0957 25 1 -0.3633 0.5945 0.8382 26 1 2.3125 -1.8160 -3.4733 27 1 1.6050 -0.9776 4.3867 28 1 3.3411 -0.8968 3.8615 29 1 1.9799 1.3533 5.0703 30 1 3.9718 1.7056 2.8497 31 1 4.7447 0.5041 5.9230 32 1 5.4812 1.7223 6.8153 33 1 1.4280 1.9653 2.3003 34 1 0.2997 0.9752 3.3215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586444615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:15 Heat of formation + Delta-G solvation = -74.331128 kcal Electronic energy + Delta-G solvation = -20104.741771 eV Core-core repulsion = 16779.970703 eV Total energy + Delta-G solvation = -3324.771068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33283 -37.67680 -37.30268 -36.05194 -33.83157 -33.63854 -33.40424 -31.23807 -28.42721 -26.09227 -24.89367 -22.95737 -21.01342 -20.28438 -18.93626 -18.42635 -17.65628 -17.39030 -16.64619 -16.43124 -16.05435 -15.39807 -15.33339 -14.74832 -13.92390 -13.42294 -13.33519 -13.06083 -12.72812 -12.44651 -12.33365 -12.27407 -12.16751 -12.06637 -11.81016 -11.73741 -11.25523 -11.05569 -10.77403 -10.56180 -10.19633 -9.86518 -9.79524 -8.89211 -8.85171 -8.43830 -8.25237 -6.48670 -4.08275 0.34843 2.61730 3.13164 3.29011 3.30454 3.36892 3.44634 3.55900 4.03157 4.34576 4.44668 4.63473 4.76690 4.97990 5.22262 5.24918 5.34953 5.49473 5.60025 5.69075 5.96475 6.13882 6.19490 6.40133 6.51186 6.61079 6.74461 6.87015 7.18159 7.79345 8.18823 8.43932 8.96003 8.99381 9.61508 10.93397 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025343 B = 0.004903 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.576940 B = 5709.553526 C = 6058.289096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.010 3.990 3 H 0.041 0.959 4 C -0.590 4.590 5 H 0.073 0.927 6 C 0.029 3.971 7 N -0.904 5.904 8 Si 1.044 2.956 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.283 1.283 12 C 0.558 3.442 13 O -0.531 6.531 14 N -0.657 5.657 15 C 0.082 3.918 16 C 0.103 3.897 17 N -1.097 6.097 18 S 2.804 3.196 19 N -1.263 6.263 20 O -0.982 6.982 21 O -0.982 6.982 22 C 0.097 3.903 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.027 0.973 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.427 0.573 31 H 0.415 0.585 32 H 0.419 0.581 33 H 0.087 0.913 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 6.506 21.028 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.011 4.011 3 H 0.058 0.942 4 C -0.628 4.628 5 H 0.091 0.909 6 C -0.175 4.175 7 N -0.538 5.538 8 Si 0.872 3.128 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.209 1.209 12 C 0.351 3.649 13 O -0.405 6.405 14 N -0.397 5.397 15 C -0.044 4.044 16 C -0.006 4.006 17 N -0.858 5.858 18 S 2.807 3.193 19 N -0.938 5.938 20 O -0.964 6.964 21 O -0.964 6.964 22 C -0.028 4.028 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.144 0.856 30 H 0.263 0.737 31 H 0.242 0.758 32 H 0.248 0.752 33 H 0.105 0.895 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.254 8.034 19.660 21.240 hybrid contribution 0.655 -2.008 1.017 2.344 sum 0.909 6.027 20.677 21.557 Atomic orbital electron populations 1.22186 0.96752 1.00702 1.00587 1.19149 0.93769 0.96725 0.91505 0.94158 1.21959 1.40605 1.10570 0.89707 0.90875 1.25769 0.95072 1.04771 0.91936 1.70826 1.41014 1.11020 1.30971 0.84089 0.76937 0.75376 0.76389 1.20939 1.19911 1.20913 1.21266 0.76579 0.85190 0.81905 1.90584 1.44432 1.20358 1.85111 1.50046 1.58834 1.24937 1.05880 1.23465 1.01416 0.95273 0.84200 1.22203 0.85054 0.93462 0.99899 1.55327 1.33115 1.71505 1.25864 1.01399 0.73097 0.72300 0.72516 1.53451 1.74045 1.23652 1.42606 1.93670 1.48577 1.78305 1.75890 1.93647 1.63293 1.64543 1.74965 1.23244 0.96969 0.89136 0.93500 0.91477 0.93355 0.95436 0.92028 0.89174 0.90362 0.85584 0.73666 0.75784 0.75158 0.89475 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.84 37.16 0.33 -2.66 16 2 C 0.01 0.24 2.04 -92.92 -0.19 0.05 16 3 H 0.04 0.89 6.83 -51.93 -0.35 0.54 16 4 C -0.59 -16.93 8.65 -34.44 -0.30 -17.23 16 5 H 0.07 2.39 7.05 -52.49 -0.37 2.01 16 6 C 0.03 0.85 5.33 -17.82 -0.10 0.75 16 7 N -0.90 -27.94 13.69 55.43 0.76 -27.18 16 8 Si 1.04 24.28 26.25 -169.99 -4.46 19.82 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -5.66 5.61 56.52 0.32 -5.35 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.56 12.17 7.28 -10.98 -0.08 12.09 16 13 O -0.53 -13.84 16.32 5.56 0.09 -13.75 16 14 N -0.66 -10.11 3.69 -185.07 -0.68 -10.79 16 15 C 0.08 0.86 8.45 -8.37 -0.07 0.79 16 16 C 0.10 0.87 4.80 -67.68 -0.32 0.54 16 17 N -1.10 -10.14 5.89 -4.61 -0.03 -10.17 16 18 S 2.80 26.10 6.70 -107.50 -0.72 25.38 16 19 N -1.26 -6.91 9.58 60.35 0.58 -6.34 16 20 O -0.98 -13.27 18.14 -57.17 -1.04 -14.30 16 21 O -0.98 -11.81 17.69 -57.17 -1.01 -12.82 16 22 C 0.10 1.05 7.63 -8.50 -0.06 0.98 16 23 H 0.07 1.44 4.66 -51.93 -0.24 1.20 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.45 7.53 -51.93 -0.39 0.06 16 26 H 0.27 8.42 8.73 -40.82 -0.36 8.06 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.13 0.69 7.81 -51.93 -0.41 0.29 16 30 H 0.43 4.45 8.95 -34.47 -0.31 4.14 16 31 H 0.42 1.51 8.96 -34.47 -0.31 1.20 16 32 H 0.42 1.66 8.96 -34.47 -0.31 1.35 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 301.01 15.07 4.54 4.54 Total: -1.00 -39.87 301.01 -6.81 -46.69 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.04 Total: 3.61 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.79 Total: -4.68 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.63 Total: -54.48 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.96 Total: -40.88 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.46 Total: 19.82 kcal Atomic # 16 Polarization: 26.10 SS G_CDS: -0.72 Total: 25.38 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -39.87 -6.81 -46.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586444615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.645 kcal (2) G-P(sol) polarization free energy of solvation -39.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds