Wall clock time and date at job start Mon Mar 30 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47337 * 2 1 4 4 C 1.50705 * 109.46824 * 239.99846 * 2 1 3 5 5 H 1.07995 * 120.00106 * 245.75931 * 4 2 1 6 6 C 1.37879 * 119.99780 * 65.76677 * 4 2 1 7 7 N 1.31509 * 119.99797 * 195.29007 * 6 4 2 8 8 Si 1.86800 * 120.00265 * 15.28328 * 6 4 2 9 9 H 1.48494 * 109.47351 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47187 * 300.00407 * 8 6 4 11 11 H 1.48498 * 109.46965 * 60.00124 * 8 6 4 12 12 C 1.50702 * 109.47111 * 120.00228 * 2 1 3 13 13 O 1.21277 * 119.99895 * 107.54425 * 12 2 1 14 14 N 1.34776 * 119.99670 * 287.55056 * 12 2 1 15 15 C 1.47073 * 136.05458 * 184.72434 * 14 12 2 16 16 C 1.53747 * 87.88719 * 152.95771 * 15 14 12 17 17 N 1.46506 * 114.39789 * 272.67613 * 16 15 14 18 18 S 1.65601 * 119.99964 * 238.58873 * 17 16 15 19 19 N 1.65605 * 107.21771 * 64.99538 * 18 17 16 20 20 O 1.42097 * 106.40443 * 178.53444 * 18 17 16 21 21 O 1.42101 * 106.40213 * 311.45588 * 18 17 16 22 22 C 1.47065 * 136.06041 * 5.08445 * 14 12 2 23 23 H 1.08999 * 109.47061 * 65.33977 * 1 2 3 24 24 H 1.08993 * 109.47270 * 185.34291 * 1 2 3 25 25 H 1.09001 * 109.46861 * 305.34644 * 1 2 3 26 26 H 0.97007 * 120.00149 * 354.94308 * 7 6 4 27 27 H 1.08997 * 113.46214 * 267.69169 * 15 14 12 28 28 H 1.09004 * 113.46501 * 38.12735 * 15 14 12 29 29 H 1.08998 * 114.26923 * 139.79248 * 16 15 14 30 30 H 0.96998 * 119.99793 * 58.58400 * 17 16 15 31 31 H 0.96995 * 119.99902 * 359.97438 * 19 18 17 32 32 H 0.97001 * 119.99908 * 179.97438 * 19 18 17 33 33 H 1.08993 * 113.46655 * 321.87271 * 22 14 12 34 34 H 1.08997 * 113.46457 * 92.31131 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5743 -1.6396 -1.1342 6 6 1.8000 -0.1742 -2.4793 7 7 1.9606 -0.9155 -3.5535 8 14 1.2568 1.6054 -2.6453 9 1 1.0749 1.9355 -4.0816 10 1 -0.0281 1.7999 -1.9265 11 1 2.2913 2.4953 -2.0595 12 6 2.0324 -0.7105 1.2304 13 8 2.5330 -1.8108 1.1334 14 7 1.9251 -0.1230 2.4387 15 6 2.3546 -0.4358 3.8101 16 6 2.3675 1.0759 4.0900 17 7 3.6288 1.7424 3.7563 18 16 4.4690 2.5586 4.9269 19 7 4.9671 1.4406 6.0425 20 8 5.6455 3.0554 4.3038 21 8 3.5280 3.3934 5.5880 22 6 1.3216 1.1096 2.9671 23 1 -0.3633 0.4288 -0.9339 24 1 -0.3633 -1.0231 0.0957 25 1 -0.3633 0.5945 0.8382 26 1 2.3125 -1.8160 -3.4733 27 1 1.6050 -0.9776 4.3867 28 1 3.3411 -0.8968 3.8615 29 1 1.9799 1.3533 5.0703 30 1 3.9718 1.7056 2.8497 31 1 4.7447 0.5041 5.9230 32 1 5.4812 1.7223 6.8153 33 1 1.4280 1.9653 2.3003 34 1 0.2997 0.9752 3.3215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586444615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:15 Heat of formation + Delta-G solvation = -112.846441 kcal Electronic energy + Delta-G solvation = -20106.411921 eV Core-core repulsion = 16779.970703 eV Total energy + Delta-G solvation = -3326.441217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44912 -39.15713 -38.19902 -36.92425 -35.80759 -34.55848 -33.96810 -33.20616 -29.63760 -26.99878 -26.80382 -24.45082 -22.28487 -21.02219 -19.97575 -19.52749 -19.31121 -18.33378 -17.89018 -17.20954 -17.09906 -16.81503 -16.29858 -15.80192 -15.56025 -14.95260 -14.77461 -14.36328 -13.95359 -13.81721 -13.35914 -13.29567 -13.20555 -13.18486 -13.07581 -13.00142 -12.77546 -12.36477 -12.25421 -11.94882 -11.56778 -11.30371 -10.98827 -10.63529 -10.61656 -10.32772 -9.66076 -8.79616 -6.39923 -0.39079 1.45788 1.56403 1.73398 1.79452 1.93496 2.02298 2.51805 2.59681 3.06875 3.24334 3.59709 3.73195 4.08718 4.09689 4.25774 4.43032 4.59168 4.66252 4.68710 4.72546 4.81572 4.98963 5.14116 5.23230 5.38532 5.49869 5.81468 5.87944 6.02125 6.37575 6.57109 6.78498 7.38412 7.43641 8.61073 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025343 B = 0.004903 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.576940 B = 5709.553526 C = 6058.289096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 H 0.062 0.938 4 C -0.599 4.599 5 H 0.011 0.989 6 C -0.025 4.025 7 N -0.939 5.939 8 Si 1.086 2.914 9 H -0.292 1.292 10 H -0.223 1.223 11 H -0.259 1.259 12 C 0.552 3.448 13 O -0.597 6.597 14 N -0.661 5.661 15 C 0.076 3.924 16 C 0.120 3.880 17 N -1.100 6.100 18 S 2.832 3.168 19 N -1.247 6.247 20 O -1.026 7.026 21 O -1.005 7.005 22 C 0.085 3.915 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.246 0.754 27 H 0.123 0.877 28 H 0.073 0.927 29 H 0.171 0.829 30 H 0.422 0.578 31 H 0.427 0.573 32 H 0.429 0.571 33 H 0.089 0.911 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 9.179 24.258 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.019 4.019 3 H 0.080 0.920 4 C -0.637 4.637 5 H 0.029 0.971 6 C -0.222 4.222 7 N -0.575 5.575 8 Si 0.905 3.095 9 H -0.219 1.219 10 H -0.147 1.147 11 H -0.184 1.184 12 C 0.344 3.656 13 O -0.477 6.477 14 N -0.397 5.397 15 C -0.048 4.048 16 C 0.012 3.988 17 N -0.860 5.860 18 S 2.835 3.165 19 N -0.927 5.927 20 O -1.009 7.009 21 O -0.987 6.987 22 C -0.038 4.038 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.141 0.859 28 H 0.091 0.909 29 H 0.188 0.812 30 H 0.257 0.743 31 H 0.256 0.744 32 H 0.261 0.739 33 H 0.108 0.892 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.552 10.734 23.001 25.430 hybrid contribution 1.271 -2.920 0.157 3.189 sum -0.280 7.814 23.159 24.443 Atomic orbital electron populations 1.22038 0.94252 1.00620 1.02434 1.19094 0.95640 0.96899 0.90294 0.92000 1.22081 1.39841 1.08756 0.93036 0.97084 1.27547 0.94432 1.08919 0.91267 1.70987 1.43774 1.10375 1.32379 0.83647 0.79533 0.69524 0.76774 1.21863 1.14677 1.18387 1.20811 0.76534 0.84443 0.83838 1.90552 1.47604 1.23015 1.86524 1.49875 1.57758 1.26248 1.05827 1.23918 1.02246 0.97406 0.81217 1.22308 0.83904 0.91518 1.01101 1.55305 1.33707 1.71398 1.25574 1.00360 0.72003 0.72076 0.72100 1.53052 1.73879 1.23730 1.42061 1.93620 1.50532 1.79689 1.77052 1.93619 1.63827 1.65947 1.75352 1.23796 0.99387 0.86871 0.93762 0.92063 0.95192 0.90231 0.94469 0.85881 0.90856 0.81181 0.74299 0.74363 0.73945 0.89219 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 8.84 71.98 0.64 -4.61 16 2 C 0.00 0.11 2.04 -12.28 -0.03 0.09 16 3 H 0.06 2.56 6.83 -2.39 -0.02 2.55 16 4 C -0.60 -35.86 8.65 25.60 0.22 -35.64 16 5 H 0.01 0.77 7.05 -2.91 -0.02 0.75 16 6 C -0.03 -1.49 5.33 84.66 0.45 -1.04 16 7 N -0.94 -60.97 13.69 21.45 0.29 -60.67 16 8 Si 1.09 47.56 26.25 68.60 1.80 49.36 16 9 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.22 -8.02 5.61 99.48 0.56 -7.46 16 11 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 12 C 0.55 23.98 7.28 87.66 0.64 24.62 16 13 O -0.60 -32.58 16.32 -3.02 -0.05 -32.63 16 14 N -0.66 -18.49 3.69 -857.83 -3.16 -21.66 16 15 C 0.08 1.31 8.45 83.26 0.70 2.01 16 16 C 0.12 1.45 4.80 45.55 0.22 1.67 16 17 N -1.10 -16.91 5.89 -168.50 -0.99 -17.91 16 18 S 2.83 45.43 6.70 -56.49 -0.38 45.05 16 19 N -1.25 -9.86 9.58 37.02 0.35 -9.50 16 20 O -1.03 -26.45 18.14 -128.00 -2.32 -28.77 16 21 O -1.01 -20.94 17.69 -128.00 -2.26 -23.21 16 22 C 0.09 1.40 7.63 83.18 0.63 2.03 16 23 H 0.06 2.42 4.66 -2.39 -0.01 2.41 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 2.23 7.53 -2.39 -0.02 2.21 16 26 H 0.25 16.62 8.73 -92.70 -0.81 15.81 16 27 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.17 0.74 7.81 -2.39 -0.02 0.73 16 30 H 0.42 7.90 8.95 -96.75 -0.87 7.04 16 31 H 0.43 1.63 8.96 -96.75 -0.87 0.76 16 32 H 0.43 2.15 8.96 -96.74 -0.87 1.28 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -95.26 301.01 -4.86 -100.12 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -1.62 Total: 10.70 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 3.48 Total: -10.87 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -3.51 Total: -109.74 kcal Atomic # 8 Polarization: -79.98 SS G_CDS: -4.64 Total: -84.61 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.80 Total: 49.36 kcal Atomic # 16 Polarization: 45.43 SS G_CDS: -0.38 Total: 45.05 kcal Total: -95.26 -4.86 -100.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586444615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.730 kcal (2) G-P(sol) polarization free energy of solvation -95.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds