Wall clock time and date at job start Mon Mar 30 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 120.00111 * 2 1 4 4 H 1.48499 * 109.46885 * 275.00249 * 3 2 1 5 5 H 1.48503 * 109.46973 * 35.00115 * 3 2 1 6 6 H 1.48497 * 109.47074 * 155.00339 * 3 2 1 7 7 C 1.38945 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99907 * 38.72238 * 7 2 1 9 9 N 1.37100 * 120.00293 * 218.44062 * 7 2 1 10 10 C 1.46504 * 119.99818 * 31.31265 * 9 7 2 11 11 C 1.50697 * 109.47180 * 91.62608 * 10 9 7 12 12 O 1.20833 * 119.99963 * 4.71745 * 11 10 9 13 13 O 1.34225 * 119.99903 * 184.71045 * 11 10 9 14 14 C 1.34776 * 120.00303 * 211.31285 * 9 7 2 15 15 O 1.21291 * 119.99738 * 175.31887 * 14 9 7 16 16 C 1.50702 * 119.99738 * 355.31574 * 14 9 7 17 17 H 1.08992 * 110.43927 * 324.89322 * 16 14 9 18 18 C 1.54264 * 110.48435 * 202.35033 * 16 14 9 19 19 C 1.53879 * 106.60092 * 217.71526 * 18 16 14 20 20 C 1.54266 * 106.59615 * 0.02562 * 19 18 16 21 21 F 1.39903 * 110.48396 * 142.28715 * 20 19 18 22 22 F 1.39894 * 110.48519 * 264.80064 * 20 19 18 23 23 C 1.54893 * 110.48277 * 87.43664 * 16 14 9 24 24 H 0.97006 * 120.00125 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47126 * 211.62973 * 10 9 7 26 26 H 1.08999 * 109.46994 * 331.62846 * 10 9 7 27 27 H 0.96701 * 116.99905 * 179.97438 * 13 11 10 28 28 H 1.08998 * 110.03589 * 336.99839 * 18 16 14 29 29 H 1.09001 * 110.03063 * 98.37926 * 18 16 14 30 30 H 1.08995 * 110.03200 * 119.28913 * 19 18 16 31 31 H 1.09000 * 110.03033 * 240.71599 * 19 18 16 32 32 H 1.08997 * 110.75808 * 274.93287 * 23 16 14 33 33 H 1.09003 * 110.75543 * 38.30420 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3899 2.1074 -1.3947 5 1 1.5024 2.6199 0.8031 6 1 3.5945 1.4119 0.5916 7 6 2.0088 -1.2033 0.0005 8 1 1.6468 -2.0361 -0.5842 9 7 3.1569 -1.3318 0.7387 10 6 3.3136 -0.5798 1.9862 11 6 2.8198 -1.4131 3.1406 12 8 2.4615 -2.5519 2.9539 13 8 2.7780 -0.8904 4.3762 14 6 4.1414 -2.1499 0.3168 15 8 5.1904 -2.1994 0.9236 16 6 3.9387 -3.0030 -0.9088 17 1 2.9033 -3.3374 -0.9727 18 6 4.8964 -4.2123 -0.8892 19 6 5.3521 -4.4357 -2.3419 20 6 4.6559 -3.3541 -3.1934 21 9 5.5155 -2.8914 -4.1955 22 9 3.4770 -3.8564 -3.7546 23 6 4.3356 -2.2208 -2.1854 24 1 -0.4850 0.8401 -0.0004 25 1 4.3662 -0.3393 2.1357 26 1 2.7348 0.3421 1.9299 27 1 2.4535 -1.4633 5.0844 28 1 5.7575 -3.9964 -0.2568 29 1 4.3749 -5.0956 -0.5206 30 1 6.4343 -4.3283 -2.4144 31 1 5.0515 -5.4277 -2.6790 32 1 3.5046 -1.6102 -2.5383 33 1 5.2177 -1.6068 -2.0036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069174.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:03 Heat of formation + Delta-G solvation = -219.453311 kcal Electronic energy + Delta-G solvation = -22692.867121 eV Core-core repulsion = 18775.669945 eV Total energy + Delta-G solvation = -3917.197176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.096 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.60046 -46.72858 -39.96382 -38.92081 -36.34562 -35.47676 -34.88667 -32.20221 -29.67082 -28.19274 -27.28446 -25.03600 -22.26116 -20.93664 -20.62711 -19.07555 -17.69300 -17.63582 -17.16282 -16.61780 -16.17905 -15.78048 -15.52153 -15.10393 -14.96750 -14.46853 -14.14038 -13.87209 -13.50254 -13.16770 -13.06237 -12.73593 -12.59561 -12.51724 -11.86248 -11.74785 -11.65672 -11.29073 -11.13585 -11.03998 -10.86147 -10.76596 -10.39329 -10.35943 -10.07887 -9.91929 -9.36899 -8.79279 -8.12879 -6.77779 -4.14518 2.83450 2.97207 3.08401 3.11677 3.23721 3.64111 3.93410 3.96991 4.19675 4.23541 4.55253 4.66922 4.81609 5.38779 5.44741 5.54055 5.60296 5.68700 5.69247 5.80984 5.85752 5.94358 6.12781 6.19721 6.27136 6.42311 6.61541 6.99460 7.00249 7.79750 8.06591 8.48302 8.73854 9.12110 9.43495 10.32125 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.007327 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.036542 B = 3820.548998 C = 4648.923192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.079 3.921 3 Si 0.838 3.162 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.370 4.370 8 H 0.110 0.890 9 N -0.437 5.437 10 C 0.122 3.878 11 C 0.464 3.536 12 O -0.499 6.499 13 O -0.527 6.527 14 C 0.496 3.504 15 O -0.591 6.591 16 C -0.089 4.089 17 H 0.108 0.892 18 C -0.113 4.113 19 C -0.156 4.156 20 C 0.276 3.724 21 F -0.203 7.203 22 F -0.195 7.195 23 C -0.137 4.137 24 H 0.278 0.722 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.399 0.601 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.342 -2.419 -0.675 6.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.133 4.133 3 Si 0.661 3.339 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.495 4.495 8 H 0.127 0.873 9 N -0.156 5.156 10 C -0.004 4.004 11 C 0.304 3.696 12 O -0.385 6.385 13 O -0.338 6.338 14 C 0.286 3.714 15 O -0.476 6.476 16 C -0.110 4.110 17 H 0.126 0.874 18 C -0.151 4.151 19 C -0.194 4.194 20 C 0.240 3.760 21 F -0.184 7.184 22 F -0.176 7.176 23 C -0.175 4.175 24 H 0.088 0.912 25 H 0.130 0.870 26 H 0.123 0.877 27 H 0.257 0.743 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.650 -2.418 -0.787 7.119 hybrid contribution -0.295 0.591 0.205 0.691 sum 6.355 -1.827 -0.582 6.638 Atomic orbital electron populations 1.70073 1.06923 1.28847 1.38958 1.25221 0.94529 0.98519 0.94993 0.87548 0.82136 0.84470 0.79741 1.19585 1.20264 1.17907 1.18946 1.00299 0.99904 1.30318 0.87259 1.43277 1.16512 1.40051 1.15761 1.21226 1.03020 0.94180 0.81982 1.24536 0.74640 0.87226 0.83248 1.90662 1.43841 1.19623 1.84356 1.84563 1.80054 1.50098 1.19120 1.19957 0.82640 0.82753 0.86042 1.90532 1.27113 1.70176 1.59819 1.21741 1.01948 0.94571 0.92753 0.87432 1.22108 1.00687 0.97657 0.94667 1.23098 1.01903 0.98349 0.96041 1.22062 0.76455 0.94601 0.82878 1.92970 1.70549 1.90025 1.64834 1.93001 1.48967 1.88536 1.87049 1.23288 1.04826 0.96419 0.93010 0.91157 0.86996 0.87734 0.74281 0.88779 0.90815 0.88826 0.89465 0.87636 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.11 13.96 55.50 0.77 -20.34 16 2 C 0.08 1.93 4.98 -17.47 -0.09 1.85 16 3 Si 0.84 17.90 26.23 -169.99 -4.46 13.44 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.25 -5.24 6.02 56.52 0.34 -4.90 16 7 C -0.37 -9.04 9.09 -14.93 -0.14 -9.18 16 8 H 0.11 2.81 6.42 -52.49 -0.34 2.47 16 9 N -0.44 -10.04 1.78 -116.10 -0.21 -10.24 16 10 C 0.12 2.59 4.49 -5.19 -0.02 2.56 16 11 C 0.46 9.64 8.38 36.00 0.30 9.95 16 12 O -0.50 -11.91 17.13 -18.76 -0.32 -12.23 16 13 O -0.53 -8.57 13.42 -39.25 -0.53 -9.09 16 14 C 0.50 10.90 6.72 -10.98 -0.07 10.83 16 15 O -0.59 -13.79 15.14 5.55 0.08 -13.70 16 16 C -0.09 -1.65 2.45 -90.11 -0.22 -1.87 16 17 H 0.11 2.09 6.51 -51.93 -0.34 1.75 16 18 C -0.11 -1.77 6.31 -25.61 -0.16 -1.93 16 19 C -0.16 -2.08 6.42 -25.61 -0.16 -2.25 16 20 C 0.28 4.29 2.49 -25.01 -0.06 4.22 16 21 F -0.20 -3.20 17.17 2.25 0.04 -3.16 16 22 F -0.19 -3.25 17.17 2.25 0.04 -3.22 16 23 C -0.14 -2.32 5.89 -24.67 -0.15 -2.47 16 24 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 25 H 0.11 2.22 7.41 -51.93 -0.38 1.84 16 26 H 0.10 2.17 4.11 -51.93 -0.21 1.96 16 27 H 0.40 4.57 9.10 45.56 0.41 4.98 16 28 H 0.09 1.57 6.77 -51.93 -0.35 1.22 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 31 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 32 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 33 H 0.10 1.61 8.05 -51.93 -0.42 1.19 16 LS Contribution 288.65 15.07 4.35 4.35 Total: -1.00 -29.66 288.65 -3.51 -33.17 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -2.51 Total: 9.31 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -0.77 Total: 11.71 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.57 Total: -30.58 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.76 Total: -35.03 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.08 Total: -6.37 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -4.46 Total: 13.44 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.66 -3.51 -33.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069174.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.280 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds