Wall clock time and date at job start Mon Mar 30 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 120.00111 * 2 1 4 4 H 1.48499 * 109.46885 * 275.00249 * 3 2 1 5 5 H 1.48503 * 109.46973 * 35.00115 * 3 2 1 6 6 H 1.48497 * 109.47074 * 155.00339 * 3 2 1 7 7 C 1.38945 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99907 * 38.72238 * 7 2 1 9 9 N 1.37100 * 120.00293 * 218.44062 * 7 2 1 10 10 C 1.46504 * 119.99818 * 31.31265 * 9 7 2 11 11 C 1.50697 * 109.47180 * 91.62608 * 10 9 7 12 12 O 1.20833 * 119.99963 * 4.71745 * 11 10 9 13 13 O 1.34225 * 119.99903 * 184.71045 * 11 10 9 14 14 C 1.34776 * 120.00303 * 211.31285 * 9 7 2 15 15 O 1.21291 * 119.99738 * 175.31887 * 14 9 7 16 16 C 1.50702 * 119.99738 * 355.31574 * 14 9 7 17 17 H 1.08992 * 110.43927 * 324.89322 * 16 14 9 18 18 C 1.54264 * 110.48435 * 202.35033 * 16 14 9 19 19 C 1.53879 * 106.60092 * 217.71526 * 18 16 14 20 20 C 1.54266 * 106.59615 * 0.02562 * 19 18 16 21 21 F 1.39903 * 110.48396 * 142.28715 * 20 19 18 22 22 F 1.39894 * 110.48519 * 264.80064 * 20 19 18 23 23 C 1.54893 * 110.48277 * 87.43664 * 16 14 9 24 24 H 0.97006 * 120.00125 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47126 * 211.62973 * 10 9 7 26 26 H 1.08999 * 109.46994 * 331.62846 * 10 9 7 27 27 H 0.96701 * 116.99905 * 179.97438 * 13 11 10 28 28 H 1.08998 * 110.03589 * 336.99839 * 18 16 14 29 29 H 1.09001 * 110.03063 * 98.37926 * 18 16 14 30 30 H 1.08995 * 110.03200 * 119.28913 * 19 18 16 31 31 H 1.09000 * 110.03033 * 240.71599 * 19 18 16 32 32 H 1.08997 * 110.75808 * 274.93287 * 23 16 14 33 33 H 1.09003 * 110.75543 * 38.30420 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3899 2.1074 -1.3947 5 1 1.5024 2.6199 0.8031 6 1 3.5945 1.4119 0.5916 7 6 2.0088 -1.2033 0.0005 8 1 1.6468 -2.0361 -0.5842 9 7 3.1569 -1.3318 0.7387 10 6 3.3136 -0.5798 1.9862 11 6 2.8198 -1.4131 3.1406 12 8 2.4615 -2.5519 2.9539 13 8 2.7780 -0.8904 4.3762 14 6 4.1414 -2.1499 0.3168 15 8 5.1904 -2.1994 0.9236 16 6 3.9387 -3.0030 -0.9088 17 1 2.9033 -3.3374 -0.9727 18 6 4.8964 -4.2123 -0.8892 19 6 5.3521 -4.4357 -2.3419 20 6 4.6559 -3.3541 -3.1934 21 9 5.5155 -2.8914 -4.1955 22 9 3.4770 -3.8564 -3.7546 23 6 4.3356 -2.2208 -2.1854 24 1 -0.4850 0.8401 -0.0004 25 1 4.3662 -0.3393 2.1357 26 1 2.7348 0.3421 1.9299 27 1 2.4535 -1.4633 5.0844 28 1 5.7575 -3.9964 -0.2568 29 1 4.3749 -5.0956 -0.5206 30 1 6.4343 -4.3283 -2.4144 31 1 5.0515 -5.4277 -2.6790 32 1 3.5046 -1.6102 -2.5383 33 1 5.2177 -1.6068 -2.0036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069174.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:03 Heat of formation + Delta-G solvation = -238.558512 kcal Electronic energy + Delta-G solvation = -22693.695584 eV Core-core repulsion = 18775.669945 eV Total energy + Delta-G solvation = -3918.025639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.096 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.86900 -48.00129 -41.62133 -40.52788 -37.77714 -37.03130 -36.64371 -34.07214 -31.12085 -29.61173 -28.73539 -26.86724 -23.78514 -22.36710 -21.94919 -20.79932 -19.23515 -19.15873 -18.76996 -18.06642 -17.63093 -17.37081 -16.98519 -16.72558 -16.52564 -15.99100 -15.72131 -15.21180 -14.99695 -14.66692 -14.49840 -14.34426 -14.12050 -13.99314 -13.42634 -13.19630 -13.03495 -12.91030 -12.68625 -12.51971 -12.41663 -12.22444 -11.99474 -11.68206 -11.62093 -11.49647 -11.13805 -10.55701 -9.96562 -8.65584 -6.05087 1.17180 1.27339 1.37013 1.44868 1.58161 2.00483 2.17635 2.56899 2.73442 2.85788 3.01946 3.28654 3.49734 3.96870 4.07835 4.18743 4.22601 4.26062 4.27941 4.37532 4.42200 4.53400 4.76808 4.90076 4.96597 5.16047 5.17915 5.31547 5.58768 5.98043 6.14951 6.88175 7.00420 7.29985 7.64495 8.48501 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.007327 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.036542 B = 3820.548998 C = 4648.923192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.044 3.956 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.241 1.241 7 C -0.372 4.372 8 H 0.084 0.916 9 N -0.447 5.447 10 C 0.110 3.890 11 C 0.469 3.531 12 O -0.538 6.538 13 O -0.509 6.509 14 C 0.491 3.509 15 O -0.606 6.606 16 C -0.092 4.092 17 H 0.092 0.908 18 C -0.108 4.108 19 C -0.143 4.143 20 C 0.278 3.722 21 F -0.202 7.202 22 F -0.203 7.203 23 C -0.136 4.136 24 H 0.283 0.717 25 H 0.127 0.873 26 H 0.109 0.891 27 H 0.424 0.576 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 -2.115 -0.479 8.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.165 1.165 7 C -0.497 4.497 8 H 0.102 0.898 9 N -0.167 5.167 10 C -0.015 4.015 11 C 0.310 3.690 12 O -0.427 6.427 13 O -0.322 6.322 14 C 0.283 3.717 15 O -0.492 6.492 16 C -0.113 4.113 17 H 0.110 0.890 18 C -0.146 4.146 19 C -0.181 4.181 20 C 0.242 3.758 21 F -0.183 7.183 22 F -0.184 7.184 23 C -0.174 4.174 24 H 0.094 0.906 25 H 0.145 0.855 26 H 0.127 0.873 27 H 0.286 0.714 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.093 -2.101 -0.559 8.380 hybrid contribution -0.765 0.484 0.229 0.934 sum 7.328 -1.617 -0.330 7.512 Atomic orbital electron populations 1.70111 1.08332 1.29933 1.40815 1.25757 0.94904 1.01168 0.94613 0.86652 0.81495 0.80529 0.79744 1.19696 1.19436 1.16472 1.18764 1.00649 0.99597 1.30729 0.89808 1.43349 1.16235 1.40649 1.16460 1.21370 1.04022 0.94270 0.81813 1.24356 0.73781 0.86436 0.84384 1.90653 1.45683 1.21138 1.85201 1.84482 1.79406 1.50019 1.18286 1.20511 0.82187 0.82414 0.86637 1.90508 1.27550 1.70622 1.60493 1.21750 1.01986 0.95523 0.92078 0.89008 1.22077 0.99612 0.96526 0.96341 1.23075 1.02900 0.98575 0.93544 1.22075 0.76394 0.94677 0.82676 1.92972 1.70366 1.90123 1.64802 1.92989 1.49681 1.88538 1.87191 1.23240 1.04536 0.96877 0.92774 0.90643 0.85543 0.87291 0.71434 0.89550 0.89895 0.86646 0.87168 0.88926 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.98 13.96 21.66 0.30 -44.68 16 2 C 0.04 2.18 4.98 84.93 0.42 2.60 16 3 Si 0.89 36.38 26.23 68.60 1.80 38.18 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.24 -9.21 6.02 99.48 0.60 -8.61 16 7 C -0.37 -18.51 9.09 84.04 0.76 -17.74 16 8 H 0.08 4.51 6.42 -2.91 -0.02 4.49 16 9 N -0.45 -20.53 1.78 -639.60 -1.14 -21.66 16 10 C 0.11 4.57 4.49 85.63 0.38 4.96 16 11 C 0.47 19.01 8.38 71.23 0.60 19.61 16 12 O -0.54 -25.59 17.13 21.94 0.38 -25.21 16 13 O -0.51 -15.36 13.42 -51.37 -0.69 -16.05 16 14 C 0.49 21.51 6.72 87.66 0.59 22.10 16 15 O -0.61 -27.77 15.14 -3.06 -0.05 -27.81 16 16 C -0.09 -3.42 2.45 -10.46 -0.03 -3.44 16 17 H 0.09 3.68 6.51 -2.39 -0.02 3.67 16 18 C -0.11 -3.21 6.31 31.32 0.20 -3.02 16 19 C -0.14 -3.45 6.42 31.32 0.20 -3.25 16 20 C 0.28 8.19 2.49 31.71 0.08 8.27 16 21 F -0.20 -5.95 17.17 44.97 0.77 -5.18 16 22 F -0.20 -6.59 17.17 44.97 0.77 -5.82 16 23 C -0.14 -4.53 5.89 31.93 0.19 -4.34 16 24 H 0.28 13.66 8.31 -92.70 -0.77 12.89 16 25 H 0.13 4.81 7.41 -2.39 -0.02 4.79 16 26 H 0.11 4.36 4.11 -2.39 -0.01 4.35 16 27 H 0.42 8.58 9.10 -74.06 -0.67 7.90 16 28 H 0.09 2.75 6.77 -2.39 -0.02 2.73 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.12 2.33 8.11 -2.39 -0.02 2.31 16 31 H 0.11 2.21 8.12 -2.39 -0.02 2.19 16 32 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.10 3.30 8.05 -2.39 -0.02 3.28 16 Total: -1.00 -63.11 288.65 5.94 -57.17 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.39 Total: 25.32 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 3.40 Total: 25.75 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.83 Total: -66.34 kcal Atomic # 8 Polarization: -68.72 SS G_CDS: -0.36 Total: -69.08 kcal Atomic # 9 Polarization: -12.54 SS G_CDS: 1.54 Total: -11.00 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 1.80 Total: 38.18 kcal Total: -63.11 5.94 -57.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069174.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.384 kcal (2) G-P(sol) polarization free energy of solvation -63.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds