Wall clock time and date at job start Mon Mar 30 2020 01:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36348 * 125.83375 * 228.05850 * 3 2 1 5 5 C 1.41461 * 107.01702 * 179.72888 * 4 3 2 6 6 C 1.47297 * 126.47196 * 180.24373 * 5 4 3 7 7 O 1.21640 * 119.99340 * 173.04640 * 6 5 4 8 8 N 1.34769 * 120.00089 * 353.04635 * 6 5 4 9 9 C 1.36976 * 120.00476 * 3.17119 * 8 6 5 10 10 H 1.08003 * 120.00026 * 307.60318 * 9 8 6 11 11 C 1.38972 * 119.99837 * 127.59639 * 9 8 6 12 12 N 1.31420 * 119.99934 * 171.62403 * 11 9 8 13 13 Si 1.86796 * 120.00237 * 351.62195 * 11 9 8 14 14 H 1.48499 * 109.47056 * 93.08879 * 13 11 9 15 15 H 1.48498 * 109.47209 * 213.08603 * 13 11 9 16 16 H 1.48495 * 109.47218 * 333.08482 * 13 11 9 17 17 C 1.46507 * 119.99943 * 183.17353 * 8 6 5 18 18 C 1.52999 * 109.46767 * 84.67309 * 17 8 6 19 19 C 1.50701 * 109.47168 * 180.02562 * 18 17 8 20 20 O 1.20832 * 119.99760 * 359.97438 * 19 18 17 21 21 O 1.34224 * 120.00589 * 179.97438 * 19 18 17 22 22 C 1.38206 * 107.05110 * 0.24351 * 5 4 3 23 23 N 1.34454 * 108.37054 * 0.02562 * 22 5 4 24 24 H 0.96996 * 125.38447 * 179.97438 * 23 22 5 25 25 H 1.07999 * 126.49614 * 359.97438 * 4 3 2 26 26 H 0.97000 * 120.00243 * 180.02562 * 12 11 9 27 27 H 1.08995 * 109.47076 * 204.66763 * 17 8 6 28 28 H 1.08999 * 109.47118 * 324.67490 * 17 8 6 29 29 H 1.09002 * 109.47266 * 299.99676 * 18 17 8 30 30 H 1.08993 * 109.47682 * 59.99781 * 18 17 8 31 31 H 0.96698 * 117.00144 * 179.97438 * 21 19 18 32 32 H 1.07998 * 125.81033 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3659 0.7398 0.8222 5 6 4.7050 0.4307 0.4871 6 6 5.9156 0.9864 1.1160 7 8 7.0104 0.5450 0.8226 8 7 5.8100 1.9837 2.0162 9 6 4.5741 2.4366 2.3950 10 1 3.8549 2.7336 1.6461 11 6 4.2455 2.5137 3.7432 12 7 3.1291 3.0990 4.1150 13 14 5.3906 1.7854 5.0268 14 1 6.3188 2.8365 5.5154 15 1 4.5911 1.2635 6.1642 16 1 6.1720 0.6773 4.4213 17 6 7.0174 2.5836 2.5897 18 6 7.5402 3.6734 1.6517 19 6 8.7825 4.2901 2.2412 20 8 9.2059 3.8985 3.3030 21 8 9.4186 5.2744 1.5870 22 6 4.6629 -0.4912 -0.5417 23 7 3.3745 -0.7428 -0.8327 24 1 3.0626 -1.3543 -1.5179 25 1 3.0377 1.4277 1.5874 26 1 2.8999 3.1532 5.0559 27 1 6.7801 3.0218 3.5591 28 1 7.7804 1.8154 2.7151 29 1 7.7775 3.2353 0.6823 30 1 6.7772 4.4416 1.5262 31 1 10.2108 5.6389 2.0049 32 1 5.5190 -0.9339 -1.0289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:50 Heat of formation + Delta-G solvation = -33.348165 kcal Electronic energy + Delta-G solvation = -20954.676485 eV Core-core repulsion = 17496.238620 eV Total energy + Delta-G solvation = -3458.437865 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.99567 -39.99065 -38.49904 -36.12813 -35.94895 -35.09959 -32.48028 -31.49568 -30.21354 -29.20211 -25.19077 -24.87803 -22.06090 -21.77260 -20.58793 -19.61131 -18.72189 -17.89693 -16.64782 -16.36568 -16.03870 -15.63790 -15.35460 -14.71147 -14.63796 -14.01376 -13.81878 -13.45524 -13.11979 -12.83612 -12.78636 -12.75120 -12.57657 -12.17726 -12.03757 -11.67237 -11.65209 -11.31010 -11.14614 -10.75771 -10.31948 -10.07703 -10.00122 -9.26327 -8.78366 -8.56342 -7.97092 -7.67593 -6.49865 -4.32761 1.77007 2.49864 2.50098 2.61841 3.13786 3.26095 3.27203 3.34818 3.48231 3.76694 4.12472 4.27924 4.37461 4.55008 4.86070 5.35314 5.38172 5.52257 5.74867 5.82766 5.88916 6.06071 6.25012 6.36247 6.52895 6.71687 6.73085 7.07822 7.28481 7.40755 7.51490 7.76661 8.01127 8.11615 8.15022 8.89290 9.23241 9.58933 10.55889 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.006239 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.771060 B = 4486.594249 C = 5382.870160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.293 3.707 3 C 0.004 3.996 4 C -0.046 4.046 5 C -0.198 4.198 6 C 0.564 3.436 7 O -0.597 6.597 8 N -0.464 5.464 9 C -0.354 4.354 10 H 0.115 0.885 11 C 0.073 3.927 12 N -0.863 5.863 13 Si 0.873 3.127 14 H -0.270 1.270 15 H -0.286 1.286 16 H -0.257 1.257 17 C 0.116 3.884 18 C -0.123 4.123 19 C 0.484 3.516 20 O -0.520 6.520 21 O -0.521 6.521 22 C 0.086 3.914 23 N -0.532 5.532 24 H 0.417 0.583 25 H 0.200 0.800 26 H 0.277 0.723 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.403 0.597 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 -1.731 -7.435 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.021 4.021 3 C -0.106 4.106 4 C -0.074 4.074 5 C -0.207 4.207 6 C 0.355 3.645 7 O -0.483 6.483 8 N -0.184 5.184 9 C -0.481 4.481 10 H 0.132 0.868 11 C -0.135 4.135 12 N -0.497 5.497 13 Si 0.699 3.301 14 H -0.196 1.196 15 H -0.213 1.213 16 H -0.181 1.181 17 C -0.008 4.008 18 C -0.162 4.162 19 C 0.326 3.674 20 O -0.408 6.408 21 O -0.332 6.332 22 C -0.055 4.055 23 N -0.127 5.127 24 H 0.254 0.746 25 H 0.216 0.784 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.261 0.739 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.625 -2.229 -7.382 8.521 hybrid contribution 1.259 -0.222 0.809 1.513 sum 4.884 -2.451 -6.573 8.548 Atomic orbital electron populations 1.81234 1.11522 1.09371 1.08804 1.24399 0.90961 0.93315 0.93462 1.15562 0.83187 1.07834 1.03971 1.23003 0.90814 0.96540 0.97033 1.19539 0.94051 1.04836 1.02292 1.17558 0.86902 0.78904 0.81101 1.90645 1.28402 1.62544 1.66698 1.43397 1.05474 1.30151 1.39417 1.19219 0.90361 1.45396 0.93075 0.86761 1.25498 0.95693 0.94408 0.97950 1.69649 1.23106 1.38875 1.18090 0.86882 0.80820 0.81049 0.81304 1.19594 1.21287 1.18071 1.21416 0.89346 0.94455 0.95533 1.21794 0.92061 1.00249 1.02102 1.23761 0.84867 0.76156 0.82578 1.90705 1.66374 1.60811 1.22936 1.84580 1.43528 1.50815 1.54309 1.22279 0.85411 0.99174 0.98647 1.41495 1.05750 1.35569 1.29896 0.74630 0.78375 0.91217 0.90426 0.90545 0.87447 0.86847 0.73895 0.80011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.57 18.54 41.84 0.78 -6.79 16 2 C 0.29 4.70 15.88 -22.47 -0.36 4.34 16 3 C 0.00 0.06 6.90 -83.98 -0.58 -0.51 16 4 C -0.05 -0.84 8.93 -39.04 -0.35 -1.19 16 5 C -0.20 -3.58 6.03 -105.00 -0.63 -4.21 16 6 C 0.56 11.94 7.59 -12.58 -0.10 11.85 16 7 O -0.60 -13.46 16.56 5.24 0.09 -13.37 16 8 N -0.46 -10.10 1.96 -116.07 -0.23 -10.33 16 9 C -0.35 -8.14 6.88 -14.98 -0.10 -8.24 16 10 H 0.12 2.69 5.89 -52.48 -0.31 2.38 16 11 C 0.07 1.78 5.40 -17.46 -0.09 1.69 16 12 N -0.86 -22.12 13.96 55.50 0.77 -21.35 16 13 Si 0.87 20.04 24.99 -169.99 -4.25 15.79 16 14 H -0.27 -6.21 6.88 56.52 0.39 -5.82 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.26 -6.04 7.09 56.52 0.40 -5.64 16 17 C 0.12 2.41 3.15 -4.04 -0.01 2.39 16 18 C -0.12 -2.11 6.10 -27.88 -0.17 -2.28 16 19 C 0.48 7.88 8.33 36.01 0.30 8.18 16 20 O -0.52 -10.02 16.74 -18.76 -0.31 -10.34 16 21 O -0.52 -6.54 13.42 -39.24 -0.53 -7.07 16 22 C 0.09 1.17 11.73 -16.41 -0.19 0.98 16 23 N -0.53 -6.23 6.02 -10.26 -0.06 -6.29 16 24 H 0.42 3.22 8.96 -40.82 -0.37 2.86 16 25 H 0.20 4.10 4.81 -52.49 -0.25 3.85 16 26 H 0.28 6.80 8.31 -40.82 -0.34 6.47 16 27 H 0.08 1.71 4.52 -51.93 -0.23 1.47 16 28 H 0.08 1.66 7.50 -51.93 -0.39 1.27 16 29 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 31 H 0.40 3.17 9.10 45.56 0.41 3.58 16 32 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 293.63 15.07 4.42 4.42 Total: -1.00 -30.62 293.63 -3.16 -33.77 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -1.55 Total: 8.56 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -2.29 Total: 13.00 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 1.26 Total: -44.77 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.75 Total: -30.78 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.25 Total: 15.79 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.62 -3.16 -33.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.425 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds