Wall clock time and date at job start Mon Mar 30 2020 01:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36348 * 125.83375 * 228.05850 * 3 2 1 5 5 C 1.41461 * 107.01702 * 179.72888 * 4 3 2 6 6 C 1.47297 * 126.47196 * 180.24373 * 5 4 3 7 7 O 1.21640 * 119.99340 * 173.04640 * 6 5 4 8 8 N 1.34769 * 120.00089 * 353.04635 * 6 5 4 9 9 C 1.36976 * 120.00476 * 3.17119 * 8 6 5 10 10 H 1.08003 * 120.00026 * 307.60318 * 9 8 6 11 11 C 1.38972 * 119.99837 * 127.59639 * 9 8 6 12 12 N 1.31420 * 119.99934 * 171.62403 * 11 9 8 13 13 Si 1.86796 * 120.00237 * 351.62195 * 11 9 8 14 14 H 1.48499 * 109.47056 * 93.08879 * 13 11 9 15 15 H 1.48498 * 109.47209 * 213.08603 * 13 11 9 16 16 H 1.48495 * 109.47218 * 333.08482 * 13 11 9 17 17 C 1.46507 * 119.99943 * 183.17353 * 8 6 5 18 18 C 1.52999 * 109.46767 * 84.67309 * 17 8 6 19 19 C 1.50701 * 109.47168 * 180.02562 * 18 17 8 20 20 O 1.20832 * 119.99760 * 359.97438 * 19 18 17 21 21 O 1.34224 * 120.00589 * 179.97438 * 19 18 17 22 22 C 1.38206 * 107.05110 * 0.24351 * 5 4 3 23 23 N 1.34454 * 108.37054 * 0.02562 * 22 5 4 24 24 H 0.96996 * 125.38447 * 179.97438 * 23 22 5 25 25 H 1.07999 * 126.49614 * 359.97438 * 4 3 2 26 26 H 0.97000 * 120.00243 * 180.02562 * 12 11 9 27 27 H 1.08995 * 109.47076 * 204.66763 * 17 8 6 28 28 H 1.08999 * 109.47118 * 324.67490 * 17 8 6 29 29 H 1.09002 * 109.47266 * 299.99676 * 18 17 8 30 30 H 1.08993 * 109.47682 * 59.99781 * 18 17 8 31 31 H 0.96698 * 117.00144 * 179.97438 * 21 19 18 32 32 H 1.07998 * 125.81033 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3659 0.7398 0.8222 5 6 4.7050 0.4307 0.4871 6 6 5.9156 0.9864 1.1160 7 8 7.0104 0.5450 0.8226 8 7 5.8100 1.9837 2.0162 9 6 4.5741 2.4366 2.3950 10 1 3.8549 2.7336 1.6461 11 6 4.2455 2.5137 3.7432 12 7 3.1291 3.0990 4.1150 13 14 5.3906 1.7854 5.0268 14 1 6.3188 2.8365 5.5154 15 1 4.5911 1.2635 6.1642 16 1 6.1720 0.6773 4.4213 17 6 7.0174 2.5836 2.5897 18 6 7.5402 3.6734 1.6517 19 6 8.7825 4.2901 2.2412 20 8 9.2059 3.8985 3.3030 21 8 9.4186 5.2744 1.5870 22 6 4.6629 -0.4912 -0.5417 23 7 3.3745 -0.7428 -0.8327 24 1 3.0626 -1.3543 -1.5179 25 1 3.0377 1.4277 1.5874 26 1 2.8999 3.1532 5.0559 27 1 6.7801 3.0218 3.5591 28 1 7.7804 1.8154 2.7151 29 1 7.7775 3.2353 0.6823 30 1 6.7772 4.4416 1.5262 31 1 10.2108 5.6389 2.0049 32 1 5.5190 -0.9339 -1.0289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:50 Heat of formation + Delta-G solvation = -55.389203 kcal Electronic energy + Delta-G solvation = -20955.632256 eV Core-core repulsion = 17496.238620 eV Total energy + Delta-G solvation = -3459.393636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.27274 -41.29734 -40.08745 -37.46789 -37.20036 -36.76958 -34.21296 -33.00083 -31.60002 -30.48889 -26.94722 -26.39478 -23.40055 -23.12258 -21.96033 -20.87252 -20.42275 -19.16248 -18.19291 -17.85951 -17.52445 -16.94629 -16.72013 -16.22914 -16.00240 -15.61661 -15.39477 -14.87000 -14.59478 -14.45351 -14.18680 -14.07041 -13.92750 -13.71865 -13.58918 -13.25627 -13.03488 -12.89962 -12.54595 -12.43553 -11.89050 -11.76862 -11.63807 -11.04787 -10.54431 -9.87258 -9.52790 -9.11971 -8.39221 -6.19121 0.54468 1.05523 1.20824 1.29106 1.38074 1.38568 1.46375 2.02404 2.24391 2.26012 2.44382 2.76697 2.87601 3.06377 3.28395 3.91804 3.99781 4.37753 4.39069 4.44705 4.58051 4.66200 4.76890 4.92483 5.01755 5.33225 5.57733 5.61212 5.79326 5.90695 6.22842 6.29638 6.40866 6.61688 7.01860 7.06181 7.49672 7.87042 8.69626 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.006239 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.771060 B = 4486.594249 C = 5382.870160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.309 3.691 3 C 0.014 3.986 4 C -0.063 4.063 5 C -0.243 4.243 6 C 0.563 3.437 7 O -0.614 6.614 8 N -0.478 5.478 9 C -0.326 4.326 10 H 0.108 0.892 11 C 0.044 3.956 12 N -0.897 5.897 13 Si 0.908 3.092 14 H -0.273 1.273 15 H -0.288 1.288 16 H -0.268 1.268 17 C 0.114 3.886 18 C -0.117 4.117 19 C 0.495 3.505 20 O -0.555 6.555 21 O -0.506 6.506 22 C 0.132 3.868 23 N -0.500 5.500 24 H 0.442 0.558 25 H 0.167 0.833 26 H 0.277 0.723 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.427 0.573 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 -2.577 -9.575 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.005 4.005 3 C -0.097 4.097 4 C -0.091 4.091 5 C -0.252 4.252 6 C 0.356 3.644 7 O -0.500 6.500 8 N -0.198 5.198 9 C -0.454 4.454 10 H 0.125 0.875 11 C -0.161 4.161 12 N -0.535 5.535 13 Si 0.735 3.265 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.192 1.192 17 C -0.009 4.009 18 C -0.155 4.155 19 C 0.339 3.661 20 O -0.446 6.446 21 O -0.319 6.319 22 C -0.012 4.012 23 N -0.097 5.097 24 H 0.284 0.716 25 H 0.184 0.816 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.289 0.711 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.437 -3.073 -9.560 10.978 hybrid contribution 1.082 0.012 1.337 1.720 sum 5.519 -3.061 -8.223 10.365 Atomic orbital electron populations 1.81255 1.12301 1.10275 1.09712 1.24381 0.90913 0.92536 0.92671 1.15155 0.82649 1.07847 1.04056 1.22529 0.91641 0.97329 0.97612 1.19445 0.92669 1.07910 1.05146 1.17967 0.87768 0.78327 0.80375 1.90621 1.29284 1.62981 1.67140 1.43506 1.05186 1.31105 1.40041 1.19134 0.90552 1.43181 0.92491 0.87490 1.25798 0.96144 0.95187 0.98990 1.69693 1.24369 1.41233 1.18156 0.86355 0.79672 0.80104 0.80352 1.19935 1.21448 1.19230 1.21314 0.88710 0.95075 0.95803 1.21605 0.92932 0.99509 1.01464 1.23414 0.84506 0.76337 0.81854 1.90704 1.67311 1.62157 1.24426 1.84503 1.44492 1.49311 1.53611 1.22672 0.86602 0.96053 0.95893 1.41402 1.04694 1.34453 1.29107 0.71563 0.81570 0.91310 0.92106 0.91911 0.86407 0.86002 0.71080 0.76288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.55 18.54 19.00 0.35 -15.19 16 2 C 0.31 9.43 15.88 88.33 1.40 10.83 16 3 C 0.01 0.39 6.90 39.02 0.27 0.66 16 4 C -0.06 -2.24 8.93 22.62 0.20 -2.03 16 5 C -0.24 -8.36 6.03 -20.11 -0.12 -8.48 16 6 C 0.56 23.36 7.59 86.63 0.66 24.02 16 7 O -0.61 -26.83 16.56 -4.16 -0.07 -26.90 16 8 N -0.48 -20.85 1.96 -639.38 -1.25 -22.11 16 9 C -0.33 -15.25 6.88 84.07 0.58 -14.67 16 10 H 0.11 5.17 5.89 -2.91 -0.02 5.15 16 11 C 0.04 2.17 5.40 84.93 0.46 2.63 16 12 N -0.90 -47.24 13.96 21.67 0.30 -46.94 16 13 Si 0.91 42.21 24.99 68.60 1.71 43.93 16 14 H -0.27 -12.71 6.88 99.48 0.68 -12.02 16 15 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 16 H -0.27 -12.77 7.09 99.48 0.71 -12.07 16 17 C 0.11 4.78 3.15 86.38 0.27 5.05 16 18 C -0.12 -3.88 6.10 29.85 0.18 -3.70 16 19 C 0.50 15.48 8.33 71.24 0.59 16.08 16 20 O -0.55 -21.11 16.74 21.95 0.37 -20.74 16 21 O -0.51 -11.42 13.42 -51.36 -0.69 -12.11 16 22 C 0.13 3.05 11.73 84.28 0.99 4.04 16 23 N -0.50 -9.66 6.02 -186.39 -1.12 -10.78 16 24 H 0.44 4.57 8.96 -92.71 -0.83 3.74 16 25 H 0.17 7.06 4.81 -2.91 -0.01 7.04 16 26 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 27 H 0.06 2.72 4.52 -2.39 -0.01 2.71 16 28 H 0.06 2.76 7.50 -2.39 -0.02 2.74 16 29 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 31 H 0.43 5.48 9.10 -74.06 -0.67 4.81 16 32 H 0.22 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -67.46 293.63 4.78 -62.67 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -0.30 Total: 13.75 kcal Atomic # 6 Polarization: 28.93 SS G_CDS: 5.48 Total: 34.41 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -1.72 Total: -95.02 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: -0.39 Total: -59.75 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.71 Total: 43.93 kcal Total: -67.46 4.78 -62.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.285 kcal (2) G-P(sol) polarization free energy of solvation -67.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds