Wall clock time and date at job start Mon Mar 30 2020 02:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47433 * 355.84934 * 3 2 1 5 5 C 1.37103 * 120.00116 * 264.13995 * 4 3 2 6 6 H 1.07996 * 120.00402 * 197.43925 * 5 4 3 7 7 C 1.38954 * 119.99572 * 17.43462 * 5 4 3 8 8 N 1.31404 * 120.00360 * 21.52495 * 7 5 4 9 9 Si 1.86801 * 119.99722 * 201.52221 * 7 5 4 10 10 H 1.48498 * 109.47326 * 60.00004 * 9 7 5 11 11 H 1.48500 * 109.47213 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47287 * 300.00400 * 9 7 5 13 13 C 1.34774 * 120.00300 * 84.14128 * 4 3 2 14 14 O 1.21289 * 120.00109 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99676 * 359.97438 * 13 4 3 16 16 C 1.50708 * 109.47119 * 180.02562 * 15 13 4 17 17 C 1.38164 * 120.01099 * 264.72002 * 16 15 13 18 18 C 1.38442 * 120.02770 * 179.79037 * 17 16 15 19 19 F 1.35091 * 119.96925 * 180.25863 * 18 17 16 20 20 C 1.38477 * 120.05682 * 0.46260 * 18 17 16 21 21 C 1.38130 * 120.03281 * 359.79642 * 20 18 17 22 22 C 1.38688 * 120.01329 * 85.00022 * 16 15 13 23 23 O 1.35941 * 120.03110 * 359.97438 * 22 16 15 24 24 H 4.40635 * 5.51396 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46984 * 235.84742 * 3 2 1 26 26 H 1.09002 * 109.47166 * 115.84997 * 3 2 1 27 27 H 0.96996 * 120.00084 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.46916 * 299.99795 * 15 13 4 29 29 H 1.08997 * 109.47616 * 60.00280 * 15 13 4 30 30 H 1.07997 * 119.99034 * 0.02677 * 17 16 15 31 31 H 1.08004 * 119.98222 * 179.76614 * 20 18 17 32 32 H 1.07997 * 120.01592 * 179.97438 * 21 20 18 33 33 H 0.96701 * 113.99489 * 90.00671 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3766 0.1000 5 6 3.4780 -1.8953 1.3218 6 1 4.0910 -2.7826 1.3791 7 6 3.0371 -1.2792 2.4867 8 7 1.9854 -0.4920 2.4560 9 14 3.9394 -1.5702 4.0962 10 1 5.3478 -1.1189 3.9628 11 1 3.2747 -0.8051 5.1816 12 1 3.9126 -3.0184 4.4240 13 6 3.2477 -2.1340 -1.0092 14 8 3.6521 -3.2744 -0.9263 15 6 2.8701 -1.5640 -2.3522 16 6 3.0863 -2.6064 -3.4190 17 6 4.2677 -2.6275 -4.1351 18 6 4.4685 -3.5875 -5.1122 19 9 5.6262 -3.6104 -5.8080 20 6 3.4820 -4.5218 -5.3797 21 6 2.2978 -4.4995 -4.6689 22 6 2.0972 -3.5410 -3.6863 23 8 0.9323 -3.5181 -2.9859 24 1 -1.0498 -0.0004 0.0002 25 1 3.0090 0.5778 0.8505 26 1 3.0091 0.4489 -0.9248 27 1 1.6774 -0.0622 3.2692 28 1 1.8206 -1.2696 -2.3398 29 1 3.4895 -0.6926 -2.5643 30 1 5.0364 -1.8973 -3.9300 31 1 3.6383 -5.2678 -6.1448 32 1 1.5284 -5.2280 -4.8781 33 1 0.2443 -2.9680 -3.3850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625878021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:47 Heat of formation + Delta-G solvation = -26.295343 kcal Electronic energy + Delta-G solvation = -20989.005895 eV Core-core repulsion = 17510.953902 eV Total energy + Delta-G solvation = -3478.051993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.75440 -39.84711 -38.31371 -36.27336 -35.15091 -32.65563 -31.91652 -31.19608 -29.42923 -27.53547 -26.33397 -24.41644 -22.66116 -21.77806 -19.12639 -18.21497 -17.88970 -16.90684 -16.70561 -16.57250 -16.15388 -15.47553 -15.13762 -14.56906 -14.32511 -14.23920 -13.85459 -13.58807 -13.16074 -12.75140 -12.52439 -12.38510 -12.21163 -11.66513 -11.54782 -11.49311 -11.24237 -10.96049 -10.52641 -10.35443 -10.21982 -9.38386 -9.25767 -8.93735 -8.88506 -8.41603 -8.19810 -7.84637 -6.31563 -3.83516 1.22267 1.31396 3.18793 3.25958 3.29426 3.55723 3.69745 3.93083 4.03654 4.20541 4.32326 4.37479 4.77734 4.90816 5.02083 5.09003 5.20283 5.44071 5.49035 5.69039 5.78931 5.84660 5.99199 6.11142 6.20184 6.25091 6.34747 6.61726 6.74002 6.89406 7.01603 7.58450 7.85758 8.06448 8.44543 8.79670 9.15879 9.37219 9.92931 10.69531 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023193 B = 0.005169 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.976617 B = 5415.733426 C = 5956.592426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.113 4.113 3 C 0.231 3.769 4 N -0.442 5.442 5 C -0.314 4.314 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.921 3.079 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.461 3.539 14 O -0.572 6.572 15 C -0.095 4.095 16 C -0.042 4.042 17 C -0.129 4.129 18 C 0.086 3.914 19 F -0.144 7.144 20 C -0.147 4.147 21 C -0.119 4.119 22 C 0.114 3.886 23 O -0.482 6.482 24 H 0.199 0.801 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.268 0.732 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.350 1.390 -13.015 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.115 4.115 3 C 0.107 3.893 4 N -0.161 5.161 5 C -0.441 4.441 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.502 5.502 9 Si 0.747 3.253 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.249 3.751 14 O -0.455 6.455 15 C -0.135 4.135 16 C -0.043 4.043 17 C -0.148 4.148 18 C 0.066 3.934 19 F -0.122 7.122 20 C -0.166 4.166 21 C -0.138 4.138 22 C 0.069 3.931 23 O -0.291 6.291 24 H 0.216 0.784 25 H 0.128 0.872 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.881 0.556 -12.438 12.482 hybrid contribution -0.122 0.252 0.648 0.706 sum -1.003 0.808 -11.790 11.860 Atomic orbital electron populations 1.24252 0.95350 1.01976 1.06368 1.23187 0.94356 0.98478 0.95435 1.18270 0.84316 0.85738 1.00937 1.43662 1.56366 1.09772 1.06286 1.19606 1.30142 1.13352 0.81014 0.87930 1.25261 0.95172 0.97455 0.99380 1.70072 1.19698 1.31230 1.29195 0.86088 0.79606 0.78681 0.80898 1.19927 1.21058 1.19901 1.19699 0.84356 0.86196 0.84860 1.90553 1.50421 1.18166 1.86369 1.20573 1.03600 0.96620 0.92733 1.19653 0.93440 0.96012 0.95211 1.20877 0.98030 0.99753 0.96140 1.17577 0.82999 0.98271 0.94503 1.91468 1.46810 1.96184 1.77762 1.20876 0.93544 0.99767 1.02423 1.21178 0.97974 0.99389 0.95248 1.18267 0.88041 0.94763 0.92075 1.84995 1.21898 1.71782 1.50472 0.78427 0.87203 0.92120 0.92147 0.88728 0.89348 0.84555 0.84775 0.84678 0.76077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.21 19.25 29.55 0.57 -4.64 16 2 C -0.11 -2.45 10.87 -37.12 -0.40 -2.85 16 3 C 0.23 4.96 4.91 -6.83 -0.03 4.92 16 4 N -0.44 -11.05 2.60 -117.94 -0.31 -11.35 16 5 C -0.31 -8.66 9.33 -14.93 -0.14 -8.80 16 6 H 0.10 3.00 7.38 -52.49 -0.39 2.62 16 7 C 0.03 0.82 4.87 -17.47 -0.08 0.73 16 8 N -0.86 -22.56 9.48 55.50 0.53 -22.04 16 9 Si 0.92 20.56 29.60 -169.99 -5.03 15.53 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.46 11.12 7.56 -10.99 -0.08 11.04 16 14 O -0.57 -16.09 15.68 5.55 0.09 -16.01 16 15 C -0.10 -1.71 4.16 -29.03 -0.12 -1.83 16 16 C -0.04 -0.72 4.39 -104.48 -0.46 -1.18 16 17 C -0.13 -2.03 9.65 -39.53 -0.38 -2.41 16 18 C 0.09 1.27 7.30 -39.42 -0.29 0.98 16 19 F -0.14 -2.09 17.26 2.25 0.04 -2.05 16 20 C -0.15 -1.95 10.02 -39.53 -0.40 -2.34 16 21 C -0.12 -1.64 9.99 -39.44 -0.39 -2.03 16 22 C 0.11 1.84 6.68 -39.23 -0.26 1.58 16 23 O -0.48 -7.77 12.64 -19.55 -0.25 -8.01 16 24 H 0.20 3.20 7.80 -54.10 -0.42 2.78 16 25 H 0.11 2.50 6.44 -51.93 -0.33 2.16 16 26 H 0.06 1.05 6.69 -51.93 -0.35 0.71 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.09 1.60 7.05 -51.93 -0.37 1.24 16 29 H 0.09 1.33 7.32 -51.93 -0.38 0.95 16 30 H 0.14 1.94 8.06 -52.49 -0.42 1.51 16 31 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 32 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.38 3.95 9.06 45.56 0.41 4.36 16 LS Contribution 301.78 15.07 4.55 4.55 Total: -1.00 -33.65 301.78 -5.09 -38.74 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -2.23 Total: 7.49 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.48 Total: -6.83 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.22 Total: -33.39 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.16 Total: -24.02 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.65 -5.09 -38.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625878021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.440 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds