Wall clock time and date at job start Mon Mar 30 2020 02:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47433 * 355.84934 * 3 2 1 5 5 C 1.37103 * 120.00116 * 264.13995 * 4 3 2 6 6 H 1.07996 * 120.00402 * 197.43925 * 5 4 3 7 7 C 1.38954 * 119.99572 * 17.43462 * 5 4 3 8 8 N 1.31404 * 120.00360 * 21.52495 * 7 5 4 9 9 Si 1.86801 * 119.99722 * 201.52221 * 7 5 4 10 10 H 1.48498 * 109.47326 * 60.00004 * 9 7 5 11 11 H 1.48500 * 109.47213 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47287 * 300.00400 * 9 7 5 13 13 C 1.34774 * 120.00300 * 84.14128 * 4 3 2 14 14 O 1.21289 * 120.00109 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99676 * 359.97438 * 13 4 3 16 16 C 1.50708 * 109.47119 * 180.02562 * 15 13 4 17 17 C 1.38164 * 120.01099 * 264.72002 * 16 15 13 18 18 C 1.38442 * 120.02770 * 179.79037 * 17 16 15 19 19 F 1.35091 * 119.96925 * 180.25863 * 18 17 16 20 20 C 1.38477 * 120.05682 * 0.46260 * 18 17 16 21 21 C 1.38130 * 120.03281 * 359.79642 * 20 18 17 22 22 C 1.38688 * 120.01329 * 85.00022 * 16 15 13 23 23 O 1.35941 * 120.03110 * 359.97438 * 22 16 15 24 24 H 4.40635 * 5.51396 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46984 * 235.84742 * 3 2 1 26 26 H 1.09002 * 109.47166 * 115.84997 * 3 2 1 27 27 H 0.96996 * 120.00084 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.46916 * 299.99795 * 15 13 4 29 29 H 1.08997 * 109.47616 * 60.00280 * 15 13 4 30 30 H 1.07997 * 119.99034 * 0.02677 * 17 16 15 31 31 H 1.08004 * 119.98222 * 179.76614 * 20 18 17 32 32 H 1.07997 * 120.01592 * 179.97438 * 21 20 18 33 33 H 0.96701 * 113.99489 * 90.00671 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3766 0.1000 5 6 3.4780 -1.8953 1.3218 6 1 4.0910 -2.7826 1.3791 7 6 3.0371 -1.2792 2.4867 8 7 1.9854 -0.4920 2.4560 9 14 3.9394 -1.5702 4.0962 10 1 5.3478 -1.1189 3.9628 11 1 3.2747 -0.8051 5.1816 12 1 3.9126 -3.0184 4.4240 13 6 3.2477 -2.1340 -1.0092 14 8 3.6521 -3.2744 -0.9263 15 6 2.8701 -1.5640 -2.3522 16 6 3.0863 -2.6064 -3.4190 17 6 4.2677 -2.6275 -4.1351 18 6 4.4685 -3.5875 -5.1122 19 9 5.6262 -3.6104 -5.8080 20 6 3.4820 -4.5218 -5.3797 21 6 2.2978 -4.4995 -4.6689 22 6 2.0972 -3.5410 -3.6863 23 8 0.9323 -3.5181 -2.9859 24 1 -1.0498 -0.0004 0.0002 25 1 3.0090 0.5778 0.8505 26 1 3.0091 0.4489 -0.9248 27 1 1.6774 -0.0622 3.2692 28 1 1.8206 -1.2696 -2.3398 29 1 3.4895 -0.6926 -2.5643 30 1 5.0364 -1.8973 -3.9300 31 1 3.6383 -5.2678 -6.1448 32 1 1.5284 -5.2280 -4.8781 33 1 0.2443 -2.9680 -3.3850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625878021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:46 Heat of formation + Delta-G solvation = -48.577451 kcal Electronic energy + Delta-G solvation = -20989.972120 eV Core-core repulsion = 17510.953902 eV Total energy + Delta-G solvation = -3479.018218 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.88064 -41.17800 -39.97457 -37.44976 -37.01739 -34.24344 -33.49269 -32.97811 -30.61665 -28.98462 -28.01426 -26.23575 -23.81391 -23.07172 -20.81055 -19.66435 -19.37287 -18.39627 -18.10719 -17.99182 -17.72824 -16.72524 -16.42066 -16.24739 -16.02890 -15.89632 -15.08154 -14.81778 -14.47601 -14.35185 -14.04706 -13.91557 -13.77903 -13.44176 -12.88845 -12.80227 -12.69906 -12.60193 -12.44130 -12.15047 -11.41548 -11.15415 -11.05701 -10.61951 -10.39061 -9.93400 -9.79830 -9.39386 -8.29998 -5.89829 0.07953 0.18280 1.38280 1.42462 1.51885 1.93208 2.18061 2.35351 2.40736 2.46692 3.06790 3.20697 3.26317 3.34961 3.65345 3.80419 3.91999 4.10766 4.19163 4.33197 4.45135 4.58491 4.69365 4.89848 4.94551 5.00326 5.10575 5.14884 5.43388 5.47078 5.49132 5.81048 6.08501 6.47961 6.88370 7.17825 7.19574 7.45755 8.03637 8.68229 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023193 B = 0.005169 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.976617 B = 5415.733426 C = 5956.592426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.154 4.154 3 C 0.232 3.768 4 N -0.454 5.454 5 C -0.352 4.352 6 H 0.070 0.930 7 C 0.005 3.995 8 N -0.871 5.871 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.272 1.272 12 H -0.283 1.283 13 C 0.451 3.549 14 O -0.624 6.624 15 C -0.080 4.080 16 C -0.070 4.070 17 C -0.138 4.138 18 C 0.073 3.927 19 F -0.144 7.144 20 C -0.135 4.135 21 C -0.118 4.118 22 C 0.101 3.899 23 O -0.504 6.504 24 H 0.232 0.768 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.272 0.728 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 1.782 -13.965 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.156 4.156 3 C 0.109 3.891 4 N -0.172 5.172 5 C -0.480 4.480 6 H 0.088 0.912 7 C -0.199 4.199 8 N -0.508 5.508 9 Si 0.804 3.196 10 H -0.192 1.192 11 H -0.196 1.196 12 H -0.209 1.209 13 C 0.241 3.759 14 O -0.510 6.510 15 C -0.119 4.119 16 C -0.071 4.071 17 C -0.156 4.156 18 C 0.054 3.946 19 F -0.123 7.123 20 C -0.154 4.154 21 C -0.136 4.136 22 C 0.056 3.944 23 O -0.317 6.317 24 H 0.249 0.751 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.135 0.865 30 H 0.161 0.839 31 H 0.185 0.815 32 H 0.181 0.819 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.738 1.002 -13.406 13.555 hybrid contribution 0.064 0.106 0.914 0.922 sum -1.674 1.108 -12.492 12.652 Atomic orbital electron populations 1.25112 0.96304 1.00094 1.04678 1.23426 0.94958 1.00164 0.97034 1.18346 0.84743 0.83818 1.02145 1.43870 1.56364 1.11170 1.05838 1.19473 1.31644 1.13705 0.83170 0.91184 1.25898 0.95450 0.96914 1.01633 1.70160 1.19721 1.30918 1.29980 0.85208 0.78897 0.77980 0.77472 1.19202 1.19618 1.20864 1.20715 0.82863 0.85664 0.86682 1.90501 1.52498 1.20532 1.87502 1.20436 1.04549 0.97653 0.89305 1.19688 0.94587 0.96964 0.95901 1.21016 0.97866 1.00392 0.96369 1.17731 0.83503 0.98715 0.94638 1.91466 1.46885 1.96210 1.77691 1.21253 0.92474 0.99354 1.02279 1.21468 0.98822 0.99022 0.94310 1.18555 0.88015 0.95221 0.92623 1.84927 1.22614 1.72594 1.51576 0.75102 0.89039 0.88156 0.91849 0.87676 0.86527 0.83865 0.81539 0.81923 0.73542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.24 19.25 74.32 1.43 -7.81 16 2 C -0.15 -6.54 10.87 31.13 0.34 -6.20 16 3 C 0.23 9.91 4.91 84.57 0.42 10.32 16 4 N -0.45 -23.15 2.60 -645.43 -1.68 -24.83 16 5 C -0.35 -20.10 9.33 84.04 0.78 -19.32 16 6 H 0.07 4.35 7.38 -2.91 -0.02 4.33 16 7 C 0.00 0.24 4.87 84.93 0.41 0.65 16 8 N -0.87 -45.30 9.48 21.66 0.21 -45.10 16 9 Si 0.98 42.50 29.60 68.60 2.03 44.54 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 C 0.45 22.17 7.56 87.66 0.66 22.83 16 14 O -0.62 -36.41 15.68 -3.06 -0.05 -36.46 16 15 C -0.08 -2.82 4.16 29.10 0.12 -2.70 16 16 C -0.07 -2.36 4.39 -19.77 -0.09 -2.44 16 17 C -0.14 -4.24 9.65 22.30 0.22 -4.02 16 18 C 0.07 2.06 7.30 22.38 0.16 2.23 16 19 F -0.14 -3.99 17.26 44.97 0.78 -3.21 16 20 C -0.14 -3.23 10.02 22.30 0.22 -3.01 16 21 C -0.12 -2.97 9.99 22.36 0.22 -2.75 16 22 C 0.10 3.16 6.68 22.49 0.15 3.31 16 23 O -0.50 -15.80 12.64 -92.88 -1.17 -16.97 16 24 H 0.23 6.73 7.80 -4.43 -0.03 6.70 16 25 H 0.09 4.19 6.44 -2.39 -0.02 4.18 16 26 H 0.10 3.35 6.69 -2.39 -0.02 3.34 16 27 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 28 H 0.11 3.45 7.05 -2.38 -0.02 3.43 16 29 H 0.12 3.35 7.32 -2.39 -0.02 3.33 16 30 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 33 H 0.41 7.81 9.06 -74.06 -0.67 7.14 16 Total: -1.00 -74.44 301.78 5.65 -68.79 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.49 Total: 22.16 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 5.05 Total: -8.91 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -1.47 Total: -69.93 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -1.22 Total: -53.43 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.54 kcal Total: -74.44 5.65 -68.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625878021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.210 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds