Wall clock time and date at job start Mon Mar 30 2020 02:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35807 * 119.99662 * 2 1 4 4 H 1.08003 * 119.99475 * 207.96748 * 3 2 1 5 5 C 1.39893 * 119.99745 * 27.96784 * 3 2 1 6 6 N 1.30831 * 120.00690 * 8.55302 * 5 3 2 7 7 Si 1.86809 * 119.99608 * 188.55089 * 5 3 2 8 8 H 1.48497 * 109.47156 * 60.00206 * 7 5 3 9 9 H 1.48500 * 109.47026 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46960 * 300.00048 * 7 5 3 11 11 C 1.34770 * 120.00293 * 180.02562 * 2 1 3 12 12 O 1.21572 * 120.00079 * 9.10370 * 11 2 1 13 13 C 1.48382 * 120.00229 * 189.10590 * 11 2 1 14 14 O 1.21765 * 119.99892 * 0.52303 * 13 11 2 15 15 C 1.41294 * 120.00246 * 180.80110 * 13 11 2 16 16 C 1.35651 * 120.00218 * 172.66849 * 15 13 11 17 17 C 1.46795 * 120.00134 * 347.64843 * 16 15 13 18 18 C 1.40093 * 120.15698 * 313.77941 * 17 16 15 19 19 C 1.37723 * 119.83943 * 179.76747 * 18 17 16 20 20 C 1.38757 * 120.15341 * 0.50946 * 19 18 17 21 21 F 1.35099 * 119.83245 * 179.76452 * 20 19 18 22 22 C 1.38749 * 120.32685 * 359.74168 * 20 19 18 23 23 C 1.37715 * 120.15830 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.46890 * 174.59926 * 1 2 3 25 25 H 1.09001 * 109.47377 * 294.59825 * 1 2 3 26 26 H 1.08997 * 109.47160 * 54.60157 * 1 2 3 27 27 H 0.96992 * 120.00541 * 179.97438 * 6 5 3 28 28 H 1.08009 * 119.99896 * 352.67170 * 15 13 11 29 29 H 1.08007 * 120.00166 * 167.64103 * 16 15 13 30 30 H 1.08002 * 120.08037 * 0.02562 * 18 17 16 31 31 H 1.07999 * 119.92310 * 180.23046 * 19 18 17 32 32 H 1.07992 * 119.92108 * 179.97438 * 22 20 19 33 33 H 1.07999 * 120.08158 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1440 1.1762 0.0000 4 1 3.1294 1.2307 -0.4387 5 6 1.5669 2.3169 0.5682 6 7 0.4519 2.2179 1.2454 7 14 2.3885 3.9816 0.3599 8 1 2.4833 4.3095 -1.0853 9 1 1.5842 5.0206 1.0520 10 1 3.7513 3.9380 0.9481 11 6 2.1389 -1.1671 -0.0005 12 8 1.5426 -2.2133 -0.1676 13 6 3.6087 -1.1753 0.2028 14 8 4.2047 -0.1283 0.3797 15 6 4.3176 -2.3974 0.1854 16 6 5.6736 -2.3956 0.2219 17 6 6.4120 -1.1452 0.0069 18 6 6.0653 -0.2964 -1.0523 19 6 6.7593 0.8775 -1.2451 20 6 7.8065 1.2150 -0.3996 21 9 8.4860 2.3657 -0.5976 22 6 8.1589 0.3766 0.6483 23 6 7.4707 -0.7980 0.8561 24 1 -0.3633 -1.0231 -0.0967 25 1 -0.3634 0.4278 0.9344 26 1 -0.3633 0.5953 -0.8377 27 1 0.0520 3.0087 1.6397 28 1 3.7797 -3.3331 0.1430 29 1 6.2100 -3.3141 0.4093 30 1 5.2531 -0.5598 -1.7136 31 1 6.4908 1.5347 -2.0590 32 1 8.9753 0.6455 1.3021 33 1 7.7458 -1.4494 1.6724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626160091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:07 Heat of formation + Delta-G solvation = -38.976840 kcal Electronic energy + Delta-G solvation = -21206.281239 eV Core-core repulsion = 17727.679335 eV Total energy + Delta-G solvation = -3478.601904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.68872 -39.87804 -38.51614 -37.00257 -35.04751 -33.28323 -31.70091 -30.95788 -29.30443 -26.98343 -25.55401 -24.16416 -22.78269 -22.00196 -19.95385 -18.65414 -17.79597 -17.39100 -16.24067 -15.84610 -15.70761 -15.35402 -14.74041 -14.67745 -14.30185 -13.93375 -13.70107 -13.45047 -13.26676 -12.89794 -12.77596 -12.72532 -12.07371 -11.66818 -11.45994 -11.29220 -11.27152 -11.03149 -10.87041 -10.61760 -10.49283 -9.83540 -9.40123 -9.37926 -8.84418 -8.22062 -7.90613 -7.58033 -6.50654 -4.06029 0.70921 1.49900 1.73543 2.86992 3.12395 3.15442 3.20950 3.86709 3.95198 4.38081 4.45247 4.47529 4.90368 4.94061 5.00432 5.04530 5.37651 5.44103 5.64457 5.89566 6.00387 6.08991 6.16725 6.30736 6.34361 6.48010 6.62419 6.66626 6.80074 6.84451 7.10621 7.17214 7.45557 7.59836 8.07650 8.47052 8.86507 9.30277 9.75560 10.36222 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.007678 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.168895 B = 3645.863369 C = 5200.756783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.381 5.381 3 C -0.304 4.304 4 H 0.124 0.876 5 C 0.039 3.961 6 N -0.845 5.845 7 Si 0.929 3.071 8 H -0.269 1.269 9 H -0.281 1.281 10 H -0.265 1.265 11 C 0.383 3.617 12 O -0.616 6.616 13 C 0.341 3.659 14 O -0.420 6.420 15 C -0.183 4.183 16 C -0.056 4.056 17 C -0.061 4.061 18 C -0.031 4.031 19 C -0.154 4.154 20 C 0.095 3.905 21 F -0.146 7.146 22 C -0.161 4.161 23 C -0.081 4.081 24 H 0.052 0.948 25 H 0.104 0.896 26 H 0.044 0.956 27 H 0.276 0.724 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.906 -3.069 -1.834 11.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.098 5.098 3 C -0.434 4.434 4 H 0.141 0.859 5 C -0.170 4.170 6 N -0.483 5.483 7 Si 0.755 3.245 8 H -0.194 1.194 9 H -0.206 1.206 10 H -0.189 1.189 11 C 0.174 3.826 12 O -0.507 6.507 13 C 0.220 3.780 14 O -0.296 6.296 15 C -0.202 4.202 16 C -0.075 4.075 17 C -0.061 4.061 18 C -0.049 4.049 19 C -0.172 4.172 20 C 0.076 3.924 21 F -0.125 7.125 22 C -0.180 4.180 23 C -0.099 4.099 24 H 0.071 0.929 25 H 0.122 0.878 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.783 -2.836 -1.726 11.282 hybrid contribution 0.142 1.108 0.062 1.119 sum 10.925 -1.728 -1.664 11.185 Atomic orbital electron populations 1.22032 0.80625 0.99889 1.04317 1.43575 1.06340 1.05302 1.54543 1.20486 1.03445 0.85032 1.34388 0.85891 1.25757 0.95785 1.01037 0.94417 1.69565 1.18044 1.31109 1.29539 0.85923 0.79724 0.79798 0.79101 1.19370 1.20581 1.18936 1.20156 0.89633 0.84145 0.88637 1.90583 1.69831 1.31320 1.58947 1.20780 0.90217 0.88909 0.78098 1.90674 1.70070 1.34571 1.34334 1.22645 0.94415 1.00774 1.02383 1.22461 0.93804 0.96172 0.95088 1.19015 0.95677 0.95298 0.96126 1.21049 0.95769 0.92029 0.96086 1.20943 0.96480 0.98710 1.01116 1.17850 0.93746 0.83346 0.97474 1.91460 1.78795 1.47446 1.94776 1.20869 1.02788 0.95776 0.98556 1.20990 0.94343 0.96154 0.98410 0.92876 0.87838 0.93705 0.91231 0.84163 0.84832 0.85605 0.84985 0.85223 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 9.40 59.85 0.56 2.36 16 2 N -0.38 -9.90 2.97 -123.12 -0.37 -10.27 16 3 C -0.30 -7.89 8.19 -15.17 -0.12 -8.01 16 4 H 0.12 3.17 5.67 -52.48 -0.30 2.88 16 5 C 0.04 0.97 5.32 -17.36 -0.09 0.88 16 6 N -0.85 -21.57 10.44 55.54 0.58 -20.99 16 7 Si 0.93 19.85 29.57 -169.99 -5.03 14.83 16 8 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 9 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 11 C 0.38 9.63 7.61 -12.09 -0.09 9.53 16 12 O -0.62 -16.28 15.75 5.30 0.08 -16.19 16 13 C 0.34 7.39 5.99 -34.25 -0.20 7.19 16 14 O -0.42 -9.53 9.40 5.13 0.05 -9.49 16 15 C -0.18 -3.16 9.40 -39.35 -0.37 -3.53 16 16 C -0.06 -0.79 9.79 -37.05 -0.36 -1.15 16 17 C -0.06 -0.93 4.35 -105.05 -0.46 -1.39 16 18 C -0.03 -0.51 6.80 -39.07 -0.27 -0.77 16 19 C -0.15 -2.43 10.01 -39.58 -0.40 -2.82 16 20 C 0.09 1.47 7.31 -39.20 -0.29 1.19 16 21 F -0.15 -2.28 17.26 2.25 0.04 -2.24 16 22 C -0.16 -2.23 10.01 -39.58 -0.40 -2.63 16 23 C -0.08 -1.10 9.80 -39.08 -0.38 -1.48 16 24 H 0.05 1.25 6.93 -51.93 -0.36 0.89 16 25 H 0.10 2.62 5.92 -51.93 -0.31 2.31 16 26 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 28 H 0.14 2.30 7.70 -52.48 -0.40 1.90 16 29 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 30 H 0.13 2.07 7.34 -52.49 -0.39 1.68 16 31 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 292.90 15.07 4.41 4.41 Total: -1.00 -29.54 292.90 -6.10 -35.64 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.00 Total: 4.93 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.87 Total: -0.63 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.21 Total: -31.26 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.13 Total: -25.68 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.54 -6.10 -35.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626160091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.340 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds