Wall clock time and date at job start Mon Mar 30 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35807 * 119.99662 * 2 1 4 4 H 1.08003 * 119.99475 * 207.96748 * 3 2 1 5 5 C 1.39893 * 119.99745 * 27.96784 * 3 2 1 6 6 N 1.30831 * 120.00690 * 8.55302 * 5 3 2 7 7 Si 1.86809 * 119.99608 * 188.55089 * 5 3 2 8 8 H 1.48497 * 109.47156 * 60.00206 * 7 5 3 9 9 H 1.48500 * 109.47026 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46960 * 300.00048 * 7 5 3 11 11 C 1.34770 * 120.00293 * 180.02562 * 2 1 3 12 12 O 1.21572 * 120.00079 * 9.10370 * 11 2 1 13 13 C 1.48382 * 120.00229 * 189.10590 * 11 2 1 14 14 O 1.21765 * 119.99892 * 0.52303 * 13 11 2 15 15 C 1.41294 * 120.00246 * 180.80110 * 13 11 2 16 16 C 1.35651 * 120.00218 * 172.66849 * 15 13 11 17 17 C 1.46795 * 120.00134 * 347.64843 * 16 15 13 18 18 C 1.40093 * 120.15698 * 313.77941 * 17 16 15 19 19 C 1.37723 * 119.83943 * 179.76747 * 18 17 16 20 20 C 1.38757 * 120.15341 * 0.50946 * 19 18 17 21 21 F 1.35099 * 119.83245 * 179.76452 * 20 19 18 22 22 C 1.38749 * 120.32685 * 359.74168 * 20 19 18 23 23 C 1.37715 * 120.15830 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.46890 * 174.59926 * 1 2 3 25 25 H 1.09001 * 109.47377 * 294.59825 * 1 2 3 26 26 H 1.08997 * 109.47160 * 54.60157 * 1 2 3 27 27 H 0.96992 * 120.00541 * 179.97438 * 6 5 3 28 28 H 1.08009 * 119.99896 * 352.67170 * 15 13 11 29 29 H 1.08007 * 120.00166 * 167.64103 * 16 15 13 30 30 H 1.08002 * 120.08037 * 0.02562 * 18 17 16 31 31 H 1.07999 * 119.92310 * 180.23046 * 19 18 17 32 32 H 1.07992 * 119.92108 * 179.97438 * 22 20 19 33 33 H 1.07999 * 120.08158 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1440 1.1762 0.0000 4 1 3.1294 1.2307 -0.4387 5 6 1.5669 2.3169 0.5682 6 7 0.4519 2.2179 1.2454 7 14 2.3885 3.9816 0.3599 8 1 2.4833 4.3095 -1.0853 9 1 1.5842 5.0206 1.0520 10 1 3.7513 3.9380 0.9481 11 6 2.1389 -1.1671 -0.0005 12 8 1.5426 -2.2133 -0.1676 13 6 3.6087 -1.1753 0.2028 14 8 4.2047 -0.1283 0.3797 15 6 4.3176 -2.3974 0.1854 16 6 5.6736 -2.3956 0.2219 17 6 6.4120 -1.1452 0.0069 18 6 6.0653 -0.2964 -1.0523 19 6 6.7593 0.8775 -1.2451 20 6 7.8065 1.2150 -0.3996 21 9 8.4860 2.3657 -0.5976 22 6 8.1589 0.3766 0.6483 23 6 7.4707 -0.7980 0.8561 24 1 -0.3633 -1.0231 -0.0967 25 1 -0.3634 0.4278 0.9344 26 1 -0.3633 0.5953 -0.8377 27 1 0.0520 3.0087 1.6397 28 1 3.7797 -3.3331 0.1430 29 1 6.2100 -3.3141 0.4093 30 1 5.2531 -0.5598 -1.7136 31 1 6.4908 1.5347 -2.0590 32 1 8.9753 0.6455 1.3021 33 1 7.7458 -1.4494 1.6724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626160091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:06 Heat of formation + Delta-G solvation = -55.243982 kcal Electronic energy + Delta-G solvation = -21206.986635 eV Core-core repulsion = 17727.679335 eV Total energy + Delta-G solvation = -3479.307300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.89245 -41.51862 -39.98268 -38.67871 -36.98037 -34.63905 -33.59925 -32.10188 -30.61147 -28.86580 -27.32699 -25.76970 -23.97859 -23.35562 -21.58986 -20.38548 -19.32272 -18.64380 -17.88977 -17.40676 -17.10329 -16.57679 -16.52646 -16.27542 -16.10107 -15.37995 -15.25141 -14.88206 -14.50088 -14.37420 -14.27716 -14.07620 -13.57926 -13.41517 -13.19534 -13.08127 -12.83798 -12.57519 -12.48005 -12.18570 -11.99133 -11.64262 -11.26905 -10.69553 -10.06450 -9.93668 -9.75428 -8.99485 -8.37370 -6.04701 -0.62641 0.28971 0.46954 1.25097 1.38837 1.48370 1.53795 2.19549 2.58102 2.68655 2.72333 3.09913 3.31389 3.73185 3.80474 3.92148 3.98084 4.26763 4.33622 4.49263 4.67483 4.71978 4.87352 4.94252 4.97886 5.09003 5.18599 5.24182 5.25682 5.40176 5.49540 5.59425 5.68545 5.95581 6.23377 6.66900 6.95810 7.38746 7.80622 8.51829 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.007678 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.168895 B = 3645.863369 C = 5200.756783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.401 5.401 3 C -0.334 4.334 4 H 0.118 0.882 5 C 0.003 3.997 6 N -0.875 5.875 7 Si 0.988 3.012 8 H -0.262 1.262 9 H -0.270 1.270 10 H -0.273 1.273 11 C 0.369 3.631 12 O -0.633 6.633 13 C 0.356 3.644 14 O -0.434 6.434 15 C -0.227 4.227 16 C 0.009 3.991 17 C -0.089 4.089 18 C -0.046 4.046 19 C -0.170 4.170 20 C 0.082 3.918 21 F -0.149 7.149 22 C -0.159 4.159 23 C -0.068 4.068 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.280 0.720 28 H 0.149 0.851 29 H 0.189 0.811 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.646 -3.847 -1.051 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.118 5.118 3 C -0.463 4.463 4 H 0.135 0.865 5 C -0.203 4.203 6 N -0.512 5.512 7 Si 0.811 3.189 8 H -0.186 1.186 9 H -0.195 1.195 10 H -0.198 1.198 11 C 0.160 3.840 12 O -0.525 6.525 13 C 0.236 3.764 14 O -0.311 6.311 15 C -0.246 4.246 16 C -0.009 4.009 17 C -0.089 4.089 18 C -0.064 4.064 19 C -0.189 4.189 20 C 0.063 3.937 21 F -0.128 7.128 22 C -0.178 4.178 23 C -0.086 4.086 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.167 0.833 29 H 0.206 0.794 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.177 0.823 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.512 -3.602 -0.948 14.016 hybrid contribution -0.478 1.203 -0.205 1.310 sum 13.033 -2.400 -1.153 13.303 Atomic orbital electron populations 1.21888 0.80694 0.99587 1.03776 1.43763 1.06695 1.05763 1.55542 1.20503 1.03653 0.85593 1.36553 0.86469 1.26468 0.96286 1.03641 0.93873 1.69636 1.19089 1.31957 1.30544 0.85061 0.78245 0.76331 0.79289 1.18620 1.19495 1.19815 1.21071 0.91660 0.83675 0.87604 1.90539 1.70844 1.31916 1.59161 1.20897 0.88577 0.90543 0.76415 1.90676 1.69759 1.35534 1.35148 1.22405 0.95601 0.98717 1.07922 1.23024 0.92421 0.97526 0.87963 1.19339 0.96879 0.96002 0.96672 1.21065 0.95741 0.92632 0.96975 1.21079 0.97082 0.98925 1.01803 1.18119 0.93803 0.83671 0.98127 1.91451 1.78788 1.47718 1.94869 1.21263 1.03240 0.95312 0.97954 1.21414 0.92604 0.96241 0.98347 0.92938 0.88907 0.93624 0.90920 0.83345 0.79401 0.86881 0.84731 0.82332 0.81374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 4.21 9.40 127.77 1.20 5.41 16 2 N -0.40 -21.49 2.97 -661.71 -1.97 -23.45 16 3 C -0.33 -17.81 8.19 84.48 0.69 -17.12 16 4 H 0.12 6.24 5.67 -2.91 -0.02 6.22 16 5 C 0.00 0.14 5.32 85.24 0.45 0.60 16 6 N -0.87 -45.65 10.44 21.82 0.23 -45.42 16 7 Si 0.99 41.15 29.57 68.60 2.03 43.18 16 8 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 9 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 C 0.37 18.92 7.61 86.95 0.66 19.58 16 12 O -0.63 -33.96 15.75 -3.94 -0.06 -34.03 16 13 C 0.36 15.37 5.99 25.73 0.15 15.53 16 14 O -0.43 -19.62 9.40 -4.56 -0.04 -19.67 16 15 C -0.23 -7.37 9.40 22.42 0.21 -7.16 16 16 C 0.01 0.21 9.79 23.91 0.23 0.45 16 17 C -0.09 -2.41 4.35 -20.14 -0.09 -2.50 16 18 C -0.05 -1.44 6.80 22.60 0.15 -1.29 16 19 C -0.17 -5.26 10.01 22.27 0.22 -5.04 16 20 C 0.08 2.39 7.31 22.52 0.16 2.55 16 21 F -0.15 -4.44 17.26 44.97 0.78 -3.66 16 22 C -0.16 -3.81 10.01 22.27 0.22 -3.59 16 23 C -0.07 -1.54 9.80 22.60 0.22 -1.32 16 24 H 0.05 2.57 6.93 -2.39 -0.02 2.55 16 25 H 0.09 4.88 5.92 -2.39 -0.01 4.87 16 26 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.28 13.59 8.30 -92.71 -0.77 12.82 16 28 H 0.15 4.59 7.70 -2.91 -0.02 4.57 16 29 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.11 3.76 7.34 -2.91 -0.02 3.74 16 31 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -65.60 292.90 6.61 -58.99 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.15 Total: 17.96 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 4.50 Total: 6.10 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -1.74 Total: -68.87 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.10 Total: -53.69 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.78 Total: -3.66 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -65.60 6.61 -58.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626160091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.747 kcal (2) G-P(sol) polarization free energy of solvation -65.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds