Wall clock time and date at job start Mon Mar 30 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 120.00186 * 2 1 4 4 H 1.48504 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46640 * 299.99447 * 3 2 1 6 6 H 1.48502 * 109.47143 * 59.99452 * 3 2 1 7 7 C 1.38955 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99722 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00399 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00433 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99616 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00109 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.46922 * 179.97438 * 12 10 9 14 14 C 1.34781 * 119.99900 * 179.97438 * 13 12 10 15 15 O 1.21548 * 120.00216 * 359.97438 * 14 13 12 16 16 C 1.47854 * 119.99803 * 179.97438 * 14 13 12 17 17 C 1.39708 * 120.48123 * 0.02562 * 16 14 13 18 18 N 1.31754 * 120.94602 * 179.97438 * 17 16 14 19 19 C 1.31721 * 122.07377 * 0.02562 * 18 17 16 20 20 C 1.39907 * 120.83928 * 359.97438 * 19 18 17 21 21 C 1.47170 * 120.51941 * 180.02562 * 20 19 18 22 22 O 1.21253 * 120.00336 * 180.02562 * 21 20 19 23 23 C 1.39663 * 120.47753 * 179.97438 * 16 14 13 24 24 H 0.96998 * 120.00159 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99773 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47469 * 59.99543 * 12 10 9 27 27 H 1.08999 * 109.46726 * 299.99539 * 12 10 9 28 28 H 0.96998 * 120.00338 * 359.97438 * 13 12 10 29 29 H 1.08001 * 119.52841 * 359.95393 * 17 16 14 30 30 H 1.07997 * 119.58243 * 179.97438 * 19 18 17 31 31 H 1.08008 * 119.99809 * 0.02562 * 21 20 19 32 32 H 1.08003 * 120.93126 * 0.02562 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0010 13 7 2.1956 -5.9765 0.0017 14 6 1.7463 -7.2472 0.0019 15 8 0.5513 -7.4693 0.0019 16 6 2.7072 -8.3710 0.0021 17 6 4.0828 -8.1272 0.0026 18 7 4.9471 -9.1216 0.0033 19 6 4.5635 -10.3818 0.0030 20 6 3.2054 -10.7180 0.0025 21 6 2.7847 -12.1283 0.0027 22 8 1.6052 -12.4091 0.0018 23 6 2.2526 -9.6916 0.0028 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3906 -0.0002 26 1 0.6180 -4.9209 -0.8896 27 1 0.6161 -4.9205 0.8903 28 1 3.1493 -5.7993 0.0021 29 1 4.4430 -7.1090 0.0021 30 1 5.3067 -11.1653 0.0031 31 1 3.5267 -12.9132 0.0037 32 1 1.1960 -9.9150 0.0028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636040162.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:26 Heat of formation + Delta-G solvation = -69.091044 kcal Electronic energy + Delta-G solvation = -19704.882030 eV Core-core repulsion = 16244.894238 eV Total energy + Delta-G solvation = -3459.987792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01779 -39.54435 -38.80582 -38.11170 -34.66642 -33.86843 -32.93799 -32.25623 -31.42667 -27.99940 -25.80766 -25.10911 -23.91092 -22.27077 -20.45344 -19.75490 -18.48157 -17.95699 -17.48560 -17.16149 -15.99361 -15.78098 -15.55806 -15.37266 -15.01701 -14.88977 -14.56165 -14.11045 -14.09208 -13.57226 -13.54549 -13.41378 -12.95473 -12.28975 -12.06867 -11.68591 -11.18469 -10.82292 -10.44798 -10.37466 -10.32994 -10.14000 -9.74126 -9.70507 -9.66480 -8.99356 -8.72076 -8.16412 -6.56931 -3.99145 -0.05524 0.52160 1.91996 2.76475 3.02020 3.06614 3.19976 3.26701 3.52722 3.66030 3.66868 3.93605 4.06021 4.31852 4.38759 4.47546 4.75240 4.80044 4.85414 5.10893 5.11546 5.53826 5.64975 5.80901 5.84861 5.96719 6.02188 6.44952 6.91586 7.34859 7.41285 7.54812 7.85554 8.16335 8.38270 8.98836 9.32512 9.79629 10.59856 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.045850 B = 0.002966 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.540433 B = 9438.308038 C =10033.704701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.698 5.698 14 C 0.559 3.441 15 O -0.537 6.537 16 C -0.191 4.191 17 C 0.168 3.832 18 N -0.492 5.492 19 C 0.170 3.830 20 C -0.257 4.257 21 C 0.389 3.611 22 O -0.453 6.453 23 C 0.039 3.961 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.410 0.590 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.116 0.884 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.610 -18.794 0.003 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.125 0.875 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.485 6.485 12 C -0.019 4.019 13 N -0.352 5.352 14 C 0.345 3.655 15 O -0.416 6.416 16 C -0.196 4.196 17 C 0.011 3.989 18 N -0.200 5.200 19 C 0.011 3.989 20 C -0.260 4.260 21 C 0.246 3.754 22 O -0.324 6.324 23 C 0.013 3.987 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.250 0.750 29 H 0.188 0.812 30 H 0.189 0.811 31 H 0.132 0.868 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.657 -18.669 0.004 19.820 hybrid contribution -0.570 0.953 0.000 1.111 sum 6.087 -17.715 0.004 18.732 Atomic orbital electron populations 1.69617 1.06050 1.28543 1.49104 1.25346 0.95674 1.00014 0.96663 0.85748 0.79698 0.80724 0.77873 1.19077 1.20568 1.20572 1.19788 0.93519 0.81913 1.48276 0.87535 1.41798 1.09531 1.04479 1.62281 1.19673 0.88280 0.84924 0.85958 1.90498 1.13636 1.86766 1.57595 1.21027 0.91720 0.85507 1.03664 1.45603 1.11831 1.04440 1.73350 1.17870 0.87831 0.82484 0.77358 1.90797 1.15786 1.84701 1.50288 1.21047 0.95329 0.94933 1.08324 1.23453 0.88275 0.99456 0.87719 1.67784 1.38471 1.00022 1.13690 1.23367 0.93251 0.94026 0.88220 1.22029 0.95626 0.97901 1.10469 1.23950 0.91413 0.89663 0.70352 1.90575 1.21950 1.85813 1.34085 1.22054 1.01586 0.90104 0.84974 0.91556 0.76987 0.89426 0.89420 0.75036 0.81249 0.81129 0.86833 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.46 13.05 55.50 0.72 -22.73 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.17 29.55 -169.99 -5.02 15.14 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.31 -8.11 9.68 -14.94 -0.14 -8.26 16 8 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.55 -13.16 5.29 -10.96 -0.06 -13.22 16 10 C 0.43 9.38 7.85 -10.98 -0.09 9.30 16 11 O -0.60 -14.66 15.24 5.54 0.08 -14.58 16 12 C 0.11 1.89 6.15 -5.20 -0.03 1.86 16 13 N -0.70 -10.95 5.48 -62.43 -0.34 -11.30 16 14 C 0.56 8.55 7.78 -12.32 -0.10 8.45 16 15 O -0.54 -9.78 16.41 5.32 0.09 -9.70 16 16 C -0.19 -2.35 5.88 -104.88 -0.62 -2.96 16 17 C 0.17 1.83 10.71 -17.04 -0.18 1.64 16 18 N -0.49 -4.95 10.33 -12.50 -0.13 -5.08 16 19 C 0.17 1.23 10.95 -16.97 -0.19 1.04 16 20 C -0.26 -2.14 5.88 -104.97 -0.62 -2.76 16 21 C 0.39 2.66 11.48 34.36 0.39 3.06 16 22 O -0.45 -5.16 17.23 5.58 0.10 -5.07 16 23 C 0.04 0.44 9.25 -38.37 -0.35 0.09 16 24 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.40 9.18 7.90 -40.82 -0.32 8.86 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.41 6.13 5.49 -40.82 -0.22 5.91 16 29 H 0.17 1.67 6.40 -52.49 -0.34 1.34 16 30 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 31 H 0.12 0.22 8.06 -52.48 -0.42 -0.21 16 32 H 0.16 1.94 7.40 -52.48 -0.39 1.56 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -33.29 300.08 -4.53 -37.82 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -2.47 Total: 12.14 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -2.02 Total: 12.03 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.20 Total: -52.32 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: 0.27 Total: -29.34 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.29 -4.53 -37.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636040162.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.267 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds