Wall clock time and date at job start Mon Mar 30 2020 02:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 S 1.81003 * 109.46962 * 120.00028 * 2 1 3 14 14 C 1.76198 * 100.00093 * 294.99792 * 13 2 1 15 15 N 1.31283 * 126.48179 * 359.68773 * 14 13 2 16 16 N 1.28529 * 109.85638 * 179.88129 * 15 14 13 17 17 C 1.30299 * 110.07971 * 0.39493 * 16 15 14 18 18 C 1.50693 * 126.34508 * 179.76577 * 17 16 15 19 19 F 1.39899 * 109.47519 * 119.99531 * 18 17 16 20 20 F 1.39897 * 109.47379 * 239.99788 * 18 17 16 21 21 N 1.36540 * 126.48604 * 180.02562 * 14 13 2 22 22 C 1.46505 * 127.14179 * 359.96036 * 21 14 13 23 23 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 25 25 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 26 26 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 27 27 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.47162 * 359.97438 * 18 17 16 30 30 H 1.08994 * 109.46652 * 90.00467 * 22 21 14 31 31 H 1.09002 * 109.46638 * 210.00256 * 22 21 14 32 32 H 1.08994 * 109.46781 * 330.00004 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.5847 -0.3024 -1.2592 11 1 6.6822 -2.4360 -2.4070 12 1 6.4931 -0.3814 -3.6814 13 16 2.1333 -0.8533 1.4779 14 6 1.5439 0.2422 2.7257 15 7 0.8682 1.3515 2.5349 16 7 0.5986 1.8986 3.6663 17 6 1.0889 1.1820 4.6378 18 6 0.9911 1.4875 6.1102 19 9 0.3240 0.4434 6.7599 20 9 2.2768 1.6234 6.6447 21 7 1.7090 0.1014 4.0738 22 6 2.4057 -0.9824 4.7712 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -0.2618 -2.1369 27 1 1.7516 -1.7715 -1.2055 28 1 4.0615 -2.2523 -4.0302 29 1 0.4387 2.4164 6.2527 30 1 3.4567 -0.7201 4.8920 31 1 1.9537 -1.1331 5.7516 32 1 2.3247 -1.9002 4.1888 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641054974.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:57 Heat of formation + Delta-G solvation = -33.621903 kcal Electronic energy + Delta-G solvation = -19149.655001 eV Core-core repulsion = 15715.561702 eV Total energy + Delta-G solvation = -3434.093299 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.48020 -47.47558 -42.90074 -35.21722 -34.58364 -32.26471 -31.64627 -28.05413 -27.54540 -26.59247 -23.37842 -22.86082 -21.76815 -20.49162 -18.16863 -17.82559 -17.76315 -16.79215 -16.43684 -16.28192 -15.85713 -14.88475 -14.53531 -14.35220 -13.83310 -13.64178 -13.52495 -13.24459 -13.06100 -12.68488 -12.11083 -11.94489 -11.70576 -11.50637 -11.24866 -10.94502 -10.82375 -10.60511 -10.51099 -10.37381 -10.02831 -9.61733 -9.55463 -9.22843 -8.47284 -7.29290 -6.11709 -4.14635 1.36424 1.40828 2.37596 2.63723 2.75186 3.07531 3.26217 3.34435 3.39079 3.66880 4.17172 4.38372 4.48400 4.52921 4.90914 5.11732 5.20763 5.25935 5.47697 5.66271 5.76840 5.82581 6.08436 6.43410 6.48370 6.55137 6.72755 7.42977 7.46546 7.85147 8.20250 8.47906 8.90556 9.50424 10.99193 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.029508 B = 0.004435 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.654140 B = 6312.029387 C = 6801.016475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 H 0.094 0.906 4 C 0.036 3.964 5 C -0.525 4.525 6 H 0.064 0.936 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 S 0.029 5.971 14 C 0.184 3.816 15 N -0.291 5.291 16 N -0.243 5.243 17 C 0.075 3.925 18 C 0.372 3.628 19 F -0.191 7.191 20 F -0.190 7.190 21 N -0.452 5.452 22 C 0.069 3.931 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.151 0.849 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 2.401 17.902 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 H 0.112 0.888 4 C -0.002 4.002 5 C -0.564 4.564 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.209 1.209 13 S 0.259 5.741 14 C -0.188 4.188 15 N -0.137 5.137 16 N -0.086 5.086 17 C -0.195 4.195 18 C 0.316 3.684 19 F -0.172 7.172 20 F -0.171 7.171 21 N -0.146 5.146 22 C -0.074 4.074 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.168 0.832 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.651 2.346 17.174 17.947 hybrid contribution 1.150 -0.016 0.482 1.247 sum -3.502 2.330 17.657 18.151 Atomic orbital electron populations 1.22136 0.93966 1.02005 1.02641 1.23736 0.97680 1.02744 0.94357 0.88805 1.19122 0.96593 0.95667 0.88855 1.21293 0.91408 1.34901 1.08807 0.91792 1.24984 0.98594 0.94988 0.95475 1.69960 1.35650 1.35395 1.12052 0.86527 0.85532 0.77860 0.78127 1.19545 1.20937 1.20929 1.86149 1.67111 1.26517 0.94344 1.27962 1.01929 1.01378 0.87547 1.74780 1.16958 1.05793 1.16214 1.73843 1.17207 1.23129 0.94434 1.25096 1.05613 0.91007 0.97765 1.19398 0.78240 0.90746 0.80024 1.93042 1.80266 1.61666 1.82258 1.93056 1.40900 1.96275 1.86880 1.46210 1.42303 1.20385 1.05694 1.22262 0.98025 0.88800 0.98275 0.92520 0.91828 0.91668 0.93885 0.95394 0.92839 0.83171 0.89217 0.88846 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.01 37.16 0.33 -2.30 16 2 C -0.06 -1.13 2.29 -26.74 -0.06 -1.19 16 3 H 0.09 1.99 8.14 -51.92 -0.42 1.57 16 4 C 0.04 0.88 4.44 -27.88 -0.12 0.76 16 5 C -0.53 -13.97 8.53 -34.44 -0.29 -14.26 16 6 H 0.06 1.69 7.60 -52.49 -0.40 1.29 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 S 0.03 0.53 20.56 -107.50 -2.21 -1.68 16 14 C 0.18 3.21 7.75 -88.34 -0.68 2.53 16 15 N -0.29 -5.46 9.76 30.68 0.30 -5.16 16 16 N -0.24 -4.13 12.17 32.99 0.40 -3.72 16 17 C 0.08 1.06 7.50 -153.99 -1.16 -0.10 16 18 C 0.37 3.65 5.46 36.00 0.20 3.84 16 19 F -0.19 -1.92 16.58 2.25 0.04 -1.88 16 20 F -0.19 -1.97 17.32 2.25 0.04 -1.93 16 21 N -0.45 -6.54 3.21 -120.91 -0.39 -6.93 16 22 C 0.07 0.71 10.92 59.85 0.65 1.36 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 1.13 5.92 -51.93 -0.31 0.82 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.15 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.77 7.23 -51.93 -0.38 0.40 16 32 H 0.10 0.97 7.86 -51.93 -0.41 0.56 16 LS Contribution 299.03 15.07 4.51 4.51 Total: -1.00 -30.83 299.03 -6.41 -37.24 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -3.58 Total: -3.80 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.23 Total: -7.78 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 1.05 Total: -40.67 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.08 Total: -3.81 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.21 Total: -1.68 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.83 -6.41 -37.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641054974.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.619 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds