Wall clock time and date at job start Mon Mar 30 2020 02:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 S 1.81003 * 109.46962 * 120.00028 * 2 1 3 14 14 C 1.76198 * 100.00093 * 294.99792 * 13 2 1 15 15 N 1.31283 * 126.48179 * 359.68773 * 14 13 2 16 16 N 1.28529 * 109.85638 * 179.88129 * 15 14 13 17 17 C 1.30299 * 110.07971 * 0.39493 * 16 15 14 18 18 C 1.50693 * 126.34508 * 179.76577 * 17 16 15 19 19 F 1.39899 * 109.47519 * 119.99531 * 18 17 16 20 20 F 1.39897 * 109.47379 * 239.99788 * 18 17 16 21 21 N 1.36540 * 126.48604 * 180.02562 * 14 13 2 22 22 C 1.46505 * 127.14179 * 359.96036 * 21 14 13 23 23 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 25 25 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 26 26 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 27 27 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.47162 * 359.97438 * 18 17 16 30 30 H 1.08994 * 109.46652 * 90.00467 * 22 21 14 31 31 H 1.09002 * 109.46638 * 210.00256 * 22 21 14 32 32 H 1.08994 * 109.46781 * 330.00004 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.5847 -0.3024 -1.2592 11 1 6.6822 -2.4360 -2.4070 12 1 6.4931 -0.3814 -3.6814 13 16 2.1333 -0.8533 1.4779 14 6 1.5439 0.2422 2.7257 15 7 0.8682 1.3515 2.5349 16 7 0.5986 1.8986 3.6663 17 6 1.0889 1.1820 4.6378 18 6 0.9911 1.4875 6.1102 19 9 0.3240 0.4434 6.7599 20 9 2.2768 1.6234 6.6447 21 7 1.7090 0.1014 4.0738 22 6 2.4057 -0.9824 4.7712 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -0.2618 -2.1369 27 1 1.7516 -1.7715 -1.2055 28 1 4.0615 -2.2523 -4.0302 29 1 0.4387 2.4164 6.2527 30 1 3.4567 -0.7201 4.8920 31 1 1.9537 -1.1331 5.7516 32 1 2.3247 -1.9002 4.1888 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641054974.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:56 Heat of formation + Delta-G solvation = -50.401280 kcal Electronic energy + Delta-G solvation = -19150.382610 eV Core-core repulsion = 15715.561702 eV Total energy + Delta-G solvation = -3434.820907 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.27893 -48.26992 -44.12081 -36.63020 -36.11640 -34.13502 -32.88412 -29.50835 -28.90668 -27.59699 -25.28192 -24.12616 -22.96322 -22.05351 -19.26588 -18.68037 -18.58364 -18.52589 -17.92319 -17.39664 -17.05981 -16.57098 -16.33758 -15.15361 -14.85156 -14.62514 -14.59223 -14.39320 -14.29080 -14.03611 -13.71877 -13.42195 -13.28772 -12.84684 -12.64210 -12.61523 -12.53169 -12.35140 -11.90722 -11.64313 -11.50498 -11.23681 -11.18558 -11.11607 -10.55936 -8.72410 -8.20703 -6.29900 0.00809 0.22721 1.14051 1.36406 1.37450 1.40589 1.42713 1.54566 2.14675 2.41531 2.89496 3.14905 3.36592 3.57856 3.73017 4.04525 4.05345 4.14162 4.17954 4.31959 4.44282 4.51690 4.67955 4.89528 4.99128 5.22646 5.36721 5.39129 5.48303 5.76721 6.15461 6.82377 7.23008 7.38861 8.90924 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.029508 B = 0.004435 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.654140 B = 6312.029387 C = 6801.016475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 H 0.080 0.920 4 C 0.045 3.955 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.955 3.045 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.280 1.280 13 S 0.033 5.967 14 C 0.169 3.831 15 N -0.318 5.318 16 N -0.272 5.272 17 C 0.091 3.909 18 C 0.380 3.620 19 F -0.189 7.189 20 F -0.190 7.190 21 N -0.450 5.450 22 C 0.059 3.941 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.021 0.979 27 H 0.010 0.990 28 H 0.264 0.736 29 H 0.190 0.810 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 2.624 20.142 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 H 0.098 0.902 4 C 0.006 3.994 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.781 3.219 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.206 1.206 13 S 0.263 5.737 14 C -0.205 4.205 15 N -0.164 5.164 16 N -0.114 5.114 17 C -0.181 4.181 18 C 0.324 3.676 19 F -0.170 7.170 20 F -0.171 7.171 21 N -0.143 5.143 22 C -0.082 4.082 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.039 0.961 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.207 0.793 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.099 2.568 19.437 20.030 hybrid contribution 0.951 -0.073 -0.073 0.957 sum -3.148 2.494 19.364 19.776 Atomic orbital electron populations 1.22035 0.92124 1.02534 1.02981 1.23427 0.99185 1.01484 0.94132 0.90179 1.18894 0.95605 0.94757 0.90156 1.21596 0.92671 1.34398 1.08664 0.91853 1.25795 1.03122 0.94738 0.95196 1.70070 1.37439 1.36490 1.12772 0.85533 0.80133 0.78040 0.78229 1.18830 1.20314 1.20623 1.85885 1.67813 1.26296 0.93724 1.27611 1.02999 1.01293 0.88597 1.74693 1.17591 1.06463 1.17635 1.73770 1.18845 1.24185 0.94599 1.25981 1.03069 0.89669 0.99374 1.19771 0.78546 0.91967 0.77331 1.93051 1.80174 1.61952 1.81820 1.93062 1.41244 1.96281 1.86518 1.46519 1.41785 1.21157 1.04796 1.22630 0.98707 0.87841 0.99033 0.91851 0.91574 0.91164 0.96068 0.97153 0.92684 0.79335 0.87842 0.86496 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.01 71.98 0.65 -4.27 16 2 C -0.05 -2.17 2.29 30.59 0.07 -2.10 16 3 H 0.08 3.48 8.14 -2.40 -0.02 3.46 16 4 C 0.04 2.22 4.44 29.85 0.13 2.35 16 5 C -0.53 -28.80 8.53 25.60 0.22 -28.58 16 6 H 0.06 3.35 7.60 -2.91 -0.02 3.33 16 7 C 0.01 0.56 5.46 84.66 0.46 1.02 16 8 N -0.93 -54.02 13.29 21.45 0.28 -53.73 16 9 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 S 0.03 1.22 20.56 -56.49 -1.16 0.06 16 14 C 0.17 5.76 7.75 179.55 1.39 7.15 16 15 N -0.32 -11.75 9.76 -56.85 -0.55 -12.30 16 16 N -0.27 -8.86 12.17 -49.53 -0.60 -9.46 16 17 C 0.09 2.34 7.50 137.63 1.03 3.37 16 18 C 0.38 6.15 5.46 71.23 0.39 6.54 16 19 F -0.19 -3.13 16.58 44.97 0.75 -2.39 16 20 F -0.19 -3.30 17.32 44.97 0.78 -2.52 16 21 N -0.45 -12.15 3.21 -536.44 -1.72 -13.87 16 22 C 0.06 1.05 10.92 127.77 1.39 2.44 16 23 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.07 2.34 5.92 -2.39 -0.01 2.33 16 25 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 29 H 0.19 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.12 1.55 7.23 -2.39 -0.02 1.53 16 32 H 0.11 1.82 7.86 -2.39 -0.02 1.80 16 Total: -1.00 -66.30 299.03 6.67 -59.63 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.14 Total: 1.58 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 5.74 Total: -12.08 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -2.60 Total: -89.36 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 1.52 Total: -4.91 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.16 Total: 0.06 kcal Total: -66.30 6.67 -59.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641054974.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.227 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds