Wall clock time and date at job start Mon Mar 30 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46937 * 2 1 4 4 C 1.50702 * 109.47223 * 240.00096 * 2 1 3 5 5 H 1.07997 * 120.00136 * 240.00280 * 4 2 1 6 6 C 1.37873 * 119.99821 * 59.99817 * 4 2 1 7 7 N 1.31512 * 120.00477 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00037 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47197 * 89.99973 * 8 6 4 10 10 H 1.48501 * 109.47653 * 210.00374 * 8 6 4 11 11 H 1.48504 * 109.47140 * 330.00468 * 8 6 4 12 12 N 1.46498 * 109.47228 * 120.00095 * 2 1 3 13 13 C 1.38000 * 119.99943 * 275.00251 * 12 2 1 14 14 N 1.32864 * 120.04094 * 359.97438 * 13 12 2 15 15 C 1.32843 * 119.82225 * 179.97438 * 14 13 12 16 16 N 1.37990 * 120.04660 * 179.97438 * 15 14 13 17 17 N 1.33124 * 119.91391 * 359.97438 * 15 14 13 18 18 C 1.32137 * 120.08432 * 0.02562 * 17 15 14 19 19 C 1.50703 * 119.91297 * 179.97438 * 18 17 15 20 20 F 1.39903 * 109.46959 * 14.99701 * 19 18 17 21 21 F 1.39896 * 109.47476 * 134.99592 * 19 18 17 22 22 F 1.39898 * 109.47047 * 255.00084 * 19 18 17 23 23 N 1.32158 * 120.17864 * 359.97438 * 18 17 15 24 24 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47144 * 300.00071 * 1 2 3 26 26 H 1.09001 * 109.46995 * 59.99830 * 1 2 3 27 27 H 0.96993 * 120.00360 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99811 * 94.99564 * 12 2 1 29 29 H 0.96999 * 120.00660 * 180.02562 * 16 15 14 30 30 H 0.97001 * 119.99742 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 7 2.0183 -0.6906 1.1961 13 6 2.1501 -0.0022 2.3849 14 7 1.8347 1.2871 2.4454 15 6 1.9628 1.9454 3.5921 16 7 1.6371 3.2846 3.6600 17 7 2.4056 1.3115 4.6757 18 6 2.7182 0.0292 4.6115 19 6 3.2198 -0.6845 5.8404 20 9 2.9505 0.0916 6.9729 21 9 2.5747 -1.9203 5.9580 22 9 4.5997 -0.8872 5.7314 23 7 2.5922 -0.6291 3.4725 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7095 1.1618 -3.4844 28 1 2.2489 -1.6318 1.1525 29 1 1.7311 3.7648 4.4975 30 1 1.3141 3.7458 2.8701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650740753.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:05 Heat of formation + Delta-G solvation = -74.460152 kcal Electronic energy + Delta-G solvation = -21414.073076 eV Core-core repulsion = 17444.288472 eV Total energy + Delta-G solvation = -3969.784603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.13855 -47.66305 -47.62174 -41.27201 -36.74508 -35.53698 -33.66906 -31.97008 -31.48571 -28.82939 -27.62583 -25.41408 -23.40786 -23.07359 -20.85177 -19.45360 -18.74963 -18.55900 -17.83404 -17.45424 -16.23997 -15.74374 -15.53705 -15.30824 -14.86983 -14.46172 -14.39880 -14.04109 -13.94229 -13.76806 -13.74404 -13.63439 -12.81410 -12.56091 -12.48627 -11.86094 -11.50404 -11.17311 -10.92912 -10.68034 -10.37424 -10.32416 -9.55305 -9.28452 -9.12751 -8.87380 -8.64192 -7.83252 -6.25464 -4.34860 0.97589 1.63199 2.18317 3.08000 3.18715 3.22025 3.26309 3.31967 3.47121 3.96160 4.18607 4.29961 4.46722 4.67967 4.92226 5.08384 5.89347 6.48030 6.58320 6.74571 6.84134 6.95283 7.16894 7.26517 7.35694 7.53310 7.70176 7.87853 8.03901 8.28299 8.62157 8.85580 9.32408 10.80541 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.004595 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.636266 B = 6092.537608 C = 6725.186064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.271 3.729 3 H 0.059 0.941 4 C -0.539 4.539 5 H 0.064 0.936 6 C 0.070 3.930 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.642 5.642 13 C 0.629 3.371 14 N -0.621 5.621 15 C 0.632 3.368 16 N -0.805 5.805 17 N -0.623 5.623 18 C 0.352 3.648 19 C 0.551 3.449 20 F -0.157 7.157 21 F -0.159 7.159 22 F -0.164 7.164 23 N -0.609 5.609 24 H 0.028 0.972 25 H 0.015 0.985 26 H 0.094 0.906 27 H 0.266 0.734 28 H 0.410 0.590 29 H 0.416 0.584 30 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 1.762 13.190 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.170 3.830 3 H 0.077 0.923 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.272 5.272 13 C 0.264 3.736 14 N -0.361 5.361 15 C 0.264 3.736 16 N -0.355 5.355 17 N -0.361 5.361 18 C 0.066 3.934 19 C 0.494 3.506 20 F -0.138 7.138 21 F -0.141 7.141 22 F -0.145 7.145 23 N -0.345 5.345 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.247 0.753 29 H 0.247 0.753 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.496 1.943 12.696 12.930 hybrid contribution 0.317 -0.475 -0.705 0.907 sum 1.813 1.468 11.991 12.216 Atomic orbital electron populations 1.22103 0.97903 0.99437 1.01059 1.19018 0.91293 0.94158 0.78507 0.92345 1.21180 1.32920 1.13582 0.90011 0.91797 1.24841 0.94628 0.94902 0.99037 1.69878 1.35665 1.22290 1.24133 0.86389 0.79287 0.79278 0.81853 1.20413 1.20987 1.19753 1.45462 1.63236 1.12856 1.05640 1.19145 0.83668 0.84437 0.86310 1.68233 1.32141 1.09135 1.26631 1.18907 0.83829 0.87311 0.83529 1.41617 1.71866 1.05181 1.16798 1.67982 1.26583 1.09709 1.31847 1.21981 0.91881 0.87680 0.91873 1.17109 0.75586 0.76621 0.81296 1.93241 1.93520 1.74797 1.52266 1.93250 1.81327 1.43381 1.96105 1.93246 1.30241 1.94967 1.96049 1.68124 1.26870 1.40154 0.99369 0.95307 0.96567 0.88736 0.92420 0.75251 0.75306 0.74778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.27 37.16 0.34 -3.05 16 2 C 0.27 6.45 2.57 -69.08 -0.18 6.28 16 3 H 0.06 1.54 7.53 -51.93 -0.39 1.15 16 4 C -0.54 -13.67 8.73 -34.44 -0.30 -13.97 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -23.44 11.32 55.43 0.63 -22.82 16 8 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 12 N -0.64 -13.44 5.20 -56.80 -0.30 -13.74 16 13 C 0.63 12.82 8.45 -322.13 -2.72 10.09 16 14 N -0.62 -12.22 9.38 -14.75 -0.14 -12.36 16 15 C 0.63 10.63 8.76 -322.14 -2.82 7.81 16 16 N -0.80 -9.49 9.05 29.85 0.27 -9.22 16 17 N -0.62 -10.50 9.99 -11.52 -0.12 -10.61 16 18 C 0.35 6.12 7.12 -156.59 -1.12 5.00 16 19 C 0.55 8.16 3.51 36.01 0.13 8.28 16 20 F -0.16 -2.17 16.91 2.25 0.04 -2.13 16 21 F -0.16 -2.32 17.22 2.25 0.04 -2.28 16 22 F -0.16 -2.37 17.30 2.25 0.04 -2.33 16 23 N -0.61 -11.58 10.36 -11.52 -0.12 -11.70 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 27 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.41 7.98 8.66 -40.82 -0.35 7.63 16 29 H 0.42 3.70 8.95 -40.82 -0.37 3.34 16 30 H 0.42 4.44 8.95 -40.82 -0.37 4.07 16 LS Contribution 283.80 15.07 4.28 4.28 Total: -1.00 -27.67 283.80 -9.34 -37.00 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.18 Total: 8.79 kcal Atomic # 6 Polarization: 28.91 SS G_CDS: -6.76 Total: 22.14 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: 0.23 Total: -80.45 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.12 Total: -6.74 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.67 -9.34 -37.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650740753.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.456 kcal (2) G-P(sol) polarization free energy of solvation -27.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds