Wall clock time and date at job start Mon Mar 30 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46937 * 2 1 4 4 C 1.50702 * 109.47223 * 240.00096 * 2 1 3 5 5 H 1.07997 * 120.00136 * 240.00280 * 4 2 1 6 6 C 1.37873 * 119.99821 * 59.99817 * 4 2 1 7 7 N 1.31512 * 120.00477 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00037 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47197 * 89.99973 * 8 6 4 10 10 H 1.48501 * 109.47653 * 210.00374 * 8 6 4 11 11 H 1.48504 * 109.47140 * 330.00468 * 8 6 4 12 12 N 1.46498 * 109.47228 * 120.00095 * 2 1 3 13 13 C 1.38000 * 119.99943 * 275.00251 * 12 2 1 14 14 N 1.32864 * 120.04094 * 359.97438 * 13 12 2 15 15 C 1.32843 * 119.82225 * 179.97438 * 14 13 12 16 16 N 1.37990 * 120.04660 * 179.97438 * 15 14 13 17 17 N 1.33124 * 119.91391 * 359.97438 * 15 14 13 18 18 C 1.32137 * 120.08432 * 0.02562 * 17 15 14 19 19 C 1.50703 * 119.91297 * 179.97438 * 18 17 15 20 20 F 1.39903 * 109.46959 * 14.99701 * 19 18 17 21 21 F 1.39896 * 109.47476 * 134.99592 * 19 18 17 22 22 F 1.39898 * 109.47047 * 255.00084 * 19 18 17 23 23 N 1.32158 * 120.17864 * 359.97438 * 18 17 15 24 24 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47144 * 300.00071 * 1 2 3 26 26 H 1.09001 * 109.46995 * 59.99830 * 1 2 3 27 27 H 0.96993 * 120.00360 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99811 * 94.99564 * 12 2 1 29 29 H 0.96999 * 120.00660 * 180.02562 * 16 15 14 30 30 H 0.97001 * 119.99742 * 0.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 7 2.0183 -0.6906 1.1961 13 6 2.1501 -0.0022 2.3849 14 7 1.8347 1.2871 2.4454 15 6 1.9628 1.9454 3.5921 16 7 1.6371 3.2846 3.6600 17 7 2.4056 1.3115 4.6757 18 6 2.7182 0.0292 4.6115 19 6 3.2198 -0.6845 5.8404 20 9 2.9505 0.0916 6.9729 21 9 2.5747 -1.9203 5.9580 22 9 4.5997 -0.8872 5.7314 23 7 2.5922 -0.6291 3.4725 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7095 1.1618 -3.4844 28 1 2.2489 -1.6318 1.1525 29 1 1.7311 3.7648 4.4975 30 1 1.3141 3.7458 2.8701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650740753.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:05 Heat of formation + Delta-G solvation = -89.038920 kcal Electronic energy + Delta-G solvation = -21414.705258 eV Core-core repulsion = 17444.288472 eV Total energy + Delta-G solvation = -3970.416786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.31261 -48.83643 -48.77894 -42.67988 -38.35059 -36.86274 -35.37081 -33.60656 -32.84751 -30.55836 -28.95561 -27.35535 -24.86513 -24.43585 -22.56869 -20.82685 -20.07849 -19.73925 -19.12230 -18.96403 -17.82580 -17.08735 -16.97204 -16.84524 -16.47019 -15.64579 -15.56364 -15.44982 -15.26668 -15.20209 -14.92455 -14.90110 -14.53847 -14.24065 -13.81646 -13.43467 -13.12547 -12.97338 -12.73564 -12.44775 -12.20604 -12.10420 -11.11941 -10.96922 -10.70043 -10.53049 -10.08417 -9.46479 -8.19742 -6.35473 -0.41562 0.19744 0.91272 1.45560 1.46825 1.56060 1.79693 1.87206 2.21979 2.41506 2.59385 2.98474 3.11906 3.20849 3.28382 3.59357 4.50501 4.75936 4.95355 5.06300 5.12640 5.27524 5.47355 5.61177 5.75470 5.91029 6.04525 6.12780 6.51660 6.62012 6.83576 7.32606 7.42441 8.86042 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.004595 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.636266 B = 6092.537608 C = 6725.186064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.285 3.715 3 H 0.028 0.972 4 C -0.554 4.554 5 H 0.066 0.934 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 0.967 3.033 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.648 5.648 13 C 0.621 3.379 14 N -0.645 5.645 15 C 0.622 3.378 16 N -0.776 5.776 17 N -0.615 5.615 18 C 0.344 3.656 19 C 0.562 3.438 20 F -0.148 7.148 21 F -0.156 7.156 22 F -0.160 7.160 23 N -0.619 5.619 24 H 0.030 0.970 25 H 0.020 0.980 26 H 0.073 0.927 27 H 0.267 0.733 28 H 0.416 0.584 29 H 0.432 0.568 30 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 1.759 13.863 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.182 3.818 3 H 0.046 0.954 4 C -0.592 4.592 5 H 0.085 0.915 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.792 3.208 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.280 5.280 13 C 0.256 3.744 14 N -0.387 5.387 15 C 0.254 3.746 16 N -0.327 5.327 17 N -0.353 5.353 18 C 0.058 3.942 19 C 0.505 3.495 20 F -0.129 7.129 21 F -0.138 7.138 22 F -0.141 7.141 23 N -0.355 5.355 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.253 0.747 29 H 0.266 0.734 30 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.833 1.999 13.438 13.709 hybrid contribution 0.212 -0.361 -0.793 0.897 sum 2.045 1.639 12.645 12.914 Atomic orbital electron populations 1.21901 0.97714 0.99217 1.00162 1.18598 0.91266 0.92628 0.79292 0.95406 1.21484 1.33029 1.13781 0.90902 0.91550 1.25602 0.94766 0.95520 1.01701 1.69990 1.36500 1.23393 1.24743 0.85420 0.78803 0.78180 0.78386 1.19858 1.20895 1.19424 1.45107 1.64466 1.13001 1.05395 1.19217 0.83902 0.84850 0.86430 1.68234 1.33180 1.09227 1.28085 1.19287 0.83708 0.88645 0.82919 1.41633 1.69700 1.03324 1.18060 1.68107 1.26230 1.09502 1.31485 1.22539 0.91339 0.88063 0.92269 1.16791 0.75616 0.76519 0.80617 1.93263 1.93480 1.74620 1.51538 1.93261 1.81326 1.43143 1.96026 1.93258 1.29911 1.94922 1.96013 1.68133 1.27576 1.40309 0.99516 0.95057 0.96086 0.90821 0.92350 0.74664 0.73360 0.73810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.13 9.27 71.98 0.67 -5.46 16 2 C 0.28 13.70 2.57 44.24 0.11 13.81 16 3 H 0.03 1.51 7.53 -2.39 -0.02 1.49 16 4 C -0.55 -28.18 8.73 25.60 0.22 -27.95 16 5 H 0.07 3.27 7.74 -2.91 -0.02 3.24 16 6 C 0.03 1.29 5.30 84.65 0.45 1.74 16 7 N -0.91 -48.60 11.32 21.45 0.24 -48.35 16 8 Si 0.97 40.69 29.54 68.60 2.03 42.72 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 N -0.65 -27.26 5.20 -333.62 -1.73 -28.99 16 13 C 0.62 25.17 8.45 261.25 2.21 27.38 16 14 N -0.65 -25.15 9.38 -200.59 -1.88 -27.04 16 15 C 0.62 20.08 8.76 261.25 2.29 22.37 16 16 N -0.78 -16.74 9.05 -59.46 -0.54 -17.27 16 17 N -0.62 -19.70 9.99 -190.36 -1.90 -21.61 16 18 C 0.34 11.49 7.12 138.54 0.99 12.47 16 19 C 0.56 15.66 3.51 71.24 0.25 15.91 16 20 F -0.15 -3.76 16.91 44.97 0.76 -3.00 16 21 F -0.16 -4.30 17.22 44.97 0.77 -3.53 16 22 F -0.16 -4.35 17.30 44.97 0.78 -3.57 16 23 N -0.62 -23.08 10.36 -190.35 -1.97 -25.05 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 27 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 28 H 0.42 16.21 8.66 -92.71 -0.80 15.41 16 29 H 0.43 6.56 8.95 -92.71 -0.83 5.73 16 30 H 0.43 8.26 8.95 -92.71 -0.83 7.43 16 Total: -1.00 -57.84 283.80 2.54 -55.31 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -1.21 Total: 20.13 kcal Atomic # 6 Polarization: 53.08 SS G_CDS: 7.19 Total: 60.26 kcal Atomic # 7 Polarization: -160.53 SS G_CDS: -7.78 Total: -168.32 kcal Atomic # 9 Polarization: -12.41 SS G_CDS: 2.31 Total: -10.10 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -57.84 2.54 -55.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650740753.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.730 kcal (2) G-P(sol) polarization free energy of solvation -57.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds