Wall clock time and date at job start Mon Mar 30 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00626 * 2 1 4 4 H 1.48504 * 109.47033 * 269.99734 * 3 2 1 5 5 H 1.48501 * 109.46883 * 29.99235 * 3 2 1 6 6 H 1.48493 * 109.47774 * 149.99399 * 3 2 1 7 7 C 1.37878 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00145 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00244 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47589 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47364 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99966 * 180.02562 * 11 10 9 13 13 O 1.21584 * 120.00434 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00188 * 179.97438 * 12 11 10 15 15 C 1.47579 * 134.49439 * 179.97438 * 14 12 11 16 16 C 1.53950 * 86.11621 * 204.63969 * 15 14 12 17 17 S 1.81402 * 113.74295 * 221.94062 * 16 15 14 18 18 N 1.65589 * 104.45184 * 178.07305 * 17 16 15 19 19 O 1.42097 * 110.54136 * 289.70360 * 17 16 15 20 20 O 1.42102 * 110.53936 * 66.44874 * 17 16 15 21 21 C 1.47925 * 134.49772 * 359.97438 * 14 12 11 22 22 H 0.97006 * 119.99545 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47024 * 60.00141 * 9 7 2 24 24 H 1.09006 * 109.47264 * 300.00731 * 9 7 2 25 25 H 1.09000 * 109.47063 * 59.99871 * 10 9 7 26 26 H 1.09006 * 109.47175 * 300.00493 * 10 9 7 27 27 H 0.97005 * 120.00077 * 359.97438 * 11 10 9 28 28 H 1.09003 * 113.77049 * 90.34034 * 15 14 12 29 29 H 1.08993 * 113.77081 * 318.93795 * 15 14 12 30 30 H 1.09002 * 113.74276 * 90.74001 * 16 15 14 31 31 H 0.97003 * 119.99967 * 0.02562 * 18 17 16 32 32 H 0.97001 * 120.00390 * 179.97438 * 18 17 16 33 33 H 1.09006 * 113.87423 * 41.10256 * 21 14 12 34 34 H 1.08997 * 113.77410 * 269.60428 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0214 -2.6367 0.0010 11 7 5.4863 -2.6368 0.0022 12 6 6.1601 -3.8040 0.0018 13 8 5.5522 -4.8570 0.0009 14 7 7.5079 -3.8042 0.0023 15 6 8.5421 -4.8570 0.0026 16 6 9.4648 -3.8043 0.6435 17 16 11.1508 -3.8064 -0.0258 18 7 11.9141 -2.5731 0.7732 19 8 11.8485 -4.9744 0.3840 20 8 11.1478 -3.3940 -1.3857 21 6 8.5448 -2.7492 0.0029 22 1 -0.4850 0.8401 -0.0004 23 1 3.8744 -0.6803 0.8911 24 1 3.8752 -0.6805 -0.8888 25 1 3.6583 -3.1503 -0.8892 26 1 3.6576 -3.1508 0.8907 27 1 5.9714 -1.7968 0.0025 28 1 8.8547 -5.1661 -0.9948 29 1 8.3132 -5.6975 0.6576 30 1 9.4402 -3.8045 1.7333 31 1 11.4313 -2.0499 1.4320 32 1 12.8443 -2.3743 0.5829 33 1 8.3181 -1.9081 0.6583 34 1 8.8582 -2.4405 -0.9943 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681524874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:57 Heat of formation + Delta-G solvation = -61.277716 kcal Electronic energy + Delta-G solvation = -19203.412064 eV Core-core repulsion = 15879.207034 eV Total energy + Delta-G solvation = -3324.205029 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52316 -38.17980 -37.43395 -36.39251 -34.99980 -33.66324 -32.85733 -30.90163 -29.32000 -26.87555 -24.96005 -23.05824 -20.85877 -19.99345 -19.66440 -18.62211 -17.99120 -17.71197 -16.99336 -16.66777 -16.24961 -15.80678 -15.18038 -14.58041 -14.30112 -13.92072 -13.81998 -13.51077 -13.40725 -12.85097 -12.64540 -12.60091 -12.56007 -12.40285 -11.87641 -11.52624 -11.28000 -11.25238 -10.92101 -10.44820 -10.33457 -10.02921 -9.84309 -9.37043 -9.08584 -8.66540 -8.48757 -6.14289 -4.14661 -0.31839 2.25902 2.30513 3.00673 3.21289 3.21989 3.28918 3.30449 3.34679 3.71229 4.05620 4.33525 4.34133 4.46903 4.75666 4.81466 5.05547 5.18451 5.25882 5.34596 5.50047 6.02985 6.17752 6.51595 6.53794 6.70268 7.00569 7.18550 7.21346 7.62951 8.08739 8.40927 8.72963 8.90308 9.45473 10.98779 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.033135 B = 0.003359 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.817463 B = 8333.022937 C = 8976.231711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.147 3.853 11 N -0.736 5.736 12 C 0.726 3.274 13 O -0.584 6.584 14 N -0.660 5.660 15 C 0.167 3.833 16 C -0.638 4.638 17 S 2.625 3.375 18 N -1.249 6.249 19 O -0.957 6.957 20 O -0.953 6.953 21 C 0.131 3.869 22 H 0.265 0.735 23 H 0.021 0.979 24 H 0.018 0.982 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.392 0.608 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.167 0.833 31 H 0.414 0.586 32 H 0.420 0.580 33 H 0.100 0.900 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.016 -2.683 2.838 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.389 5.389 12 C 0.428 3.572 13 O -0.461 6.461 14 N -0.403 5.403 15 C 0.041 3.959 16 C -0.747 4.747 17 S 2.714 3.286 18 N -0.923 5.923 19 O -0.946 6.946 20 O -0.942 6.942 21 C 0.006 3.994 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.224 0.776 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.184 0.816 31 H 0.240 0.760 32 H 0.251 0.749 33 H 0.118 0.882 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 25.385 -4.089 2.071 25.796 hybrid contribution 0.318 1.987 0.714 2.135 sum 25.703 -2.102 2.785 25.938 Atomic orbital electron populations 1.69902 1.06298 1.27087 1.50296 1.25000 0.94770 0.99154 0.94362 0.86737 0.80173 0.83531 0.78508 1.20191 1.21252 1.19189 1.20903 0.88546 0.94960 1.51767 0.90549 1.19795 0.98014 0.91252 0.96803 1.21450 0.74270 1.00088 1.01704 1.45490 1.08899 1.06005 1.78546 1.15496 0.78874 0.85049 0.77731 1.90936 1.65981 1.30836 1.58358 1.49017 1.02385 1.08603 1.80247 1.22467 0.81633 0.91589 1.00169 1.32590 1.20744 1.07623 1.13753 1.04555 0.75754 0.73837 0.74449 1.53063 1.25142 1.54692 1.59432 1.93631 1.69372 1.48793 1.82821 1.93646 1.85759 1.81643 1.33174 1.22947 0.83533 0.91747 1.01151 0.92506 0.96051 0.96421 0.91940 0.91975 0.77566 0.88943 0.87709 0.81553 0.75972 0.74940 0.88220 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 7 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.47 4.15 -27.89 -0.12 -0.58 16 10 C 0.15 2.99 5.61 -4.05 -0.02 2.97 16 11 N -0.74 -12.14 5.56 -65.23 -0.36 -12.50 16 12 C 0.73 12.25 8.76 -86.92 -0.76 11.49 16 13 O -0.58 -12.37 17.07 5.29 0.09 -12.28 16 14 N -0.66 -7.81 3.62 -184.02 -0.67 -8.47 16 15 C 0.17 1.47 8.43 -2.97 -0.03 1.45 16 16 C -0.64 -3.42 4.61 -25.80 -0.12 -3.54 16 17 S 2.62 16.06 5.94 -107.50 -0.64 15.42 16 18 N -1.25 -3.61 9.43 60.35 0.57 -3.04 16 19 O -0.96 -9.52 18.10 -57.54 -1.04 -10.56 16 20 O -0.95 -9.23 17.32 -57.54 -1.00 -10.23 16 21 C 0.13 0.90 8.03 -2.77 -0.02 0.88 16 22 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 24 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.39 5.27 8.09 -40.82 -0.33 4.94 16 28 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.17 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.41 0.08 8.83 -34.46 -0.30 -0.22 16 32 H 0.42 0.94 8.96 -34.47 -0.31 0.63 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.11 0.67 7.46 -51.93 -0.39 0.29 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -39.97 307.17 -8.03 -48.00 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.22 Total: -0.36 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.50 Total: -0.31 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.31 Total: -50.33 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.95 Total: -33.06 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Atomic # 16 Polarization: 16.06 SS G_CDS: -0.64 Total: 15.42 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -39.97 -8.03 -48.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681524874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.281 kcal (2) G-P(sol) polarization free energy of solvation -39.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds