Wall clock time and date at job start Mon Mar 30 2020 02:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 O 1.45195 * 109.47573 * 179.97438 * 3 2 1 5 5 C 1.34752 * 117.00253 * 179.97438 * 4 3 2 6 6 O 1.21510 * 119.99813 * 0.02562 * 5 4 3 7 7 C 1.47460 * 119.99938 * 180.02562 * 5 4 3 8 8 C 1.39839 * 120.06259 * 180.02562 * 7 5 4 9 9 C 1.37614 * 119.92694 * 180.29959 * 8 7 5 10 10 C 1.39272 * 120.06806 * 359.44512 * 9 8 7 11 11 N 1.39071 * 119.93249 * 180.25894 * 10 9 8 12 12 C 1.34771 * 119.99977 * 213.94198 * 11 10 9 13 13 O 1.21726 * 120.00405 * 5.27935 * 12 11 10 14 14 C 1.46202 * 120.00170 * 185.27935 * 12 11 10 15 15 H 1.07998 * 119.99946 * 359.97438 * 14 12 11 16 16 C 1.40121 * 120.00108 * 179.97438 * 14 12 11 17 17 N 1.30640 * 120.00103 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00046 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.47148 * 59.99808 * 18 16 14 20 20 H 1.48499 * 109.47211 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47203 * 300.00119 * 18 16 14 22 22 C 1.39269 * 120.13235 * 0.55252 * 10 9 8 23 23 C 1.37607 * 120.07078 * 359.73074 * 22 10 9 24 24 H 1.08997 * 109.46832 * 299.99586 * 1 2 3 25 25 H 1.08996 * 109.46733 * 60.00082 * 1 2 3 26 26 H 1.08995 * 109.46574 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47001 * 240.00048 * 2 1 3 28 28 H 1.09002 * 109.47399 * 120.00088 * 2 1 3 29 29 H 1.09004 * 109.47029 * 60.00065 * 3 2 1 30 30 H 1.09002 * 109.46941 * 300.00369 * 3 2 1 31 31 H 1.07993 * 120.04073 * 0.02610 * 8 7 5 32 32 H 1.08001 * 119.96523 * 179.70162 * 9 8 7 33 33 H 0.97001 * 119.99876 * 33.94416 * 11 10 9 34 34 H 0.96998 * 119.99977 * 180.02562 * 17 16 14 35 35 H 1.08003 * 119.96184 * 179.69770 * 22 10 9 36 36 H 1.08004 * 120.03417 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4920 1.4425 0.0006 5 6 4.1038 2.6432 0.0002 6 8 3.4420 3.6622 -0.0003 7 6 5.5764 2.7203 0.0002 8 6 6.2126 3.9656 0.0002 9 6 7.5870 4.0344 -0.0060 10 6 8.3442 2.8654 -0.0007 11 7 9.7330 2.9382 -0.0016 12 6 10.4564 2.0035 -0.6491 13 8 9.8951 1.1512 -1.3126 14 6 11.9153 2.0130 -0.5546 15 1 12.4134 2.7694 0.0338 16 6 12.6674 1.0408 -1.2273 17 7 12.0649 0.1255 -1.9386 18 14 14.5315 1.0534 -1.1071 19 1 14.9370 0.9012 0.3134 20 1 15.0864 -0.0708 -1.9030 21 1 15.0529 2.3395 -1.6356 22 6 7.7134 1.6238 -0.0007 23 6 6.3394 1.5485 -0.0003 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.6261 4.8724 0.0007 32 1 8.0790 4.9958 -0.0108 33 1 10.1810 3.6618 0.4639 34 1 12.5855 -0.5477 -2.4040 35 1 8.3032 0.7191 -0.0015 36 1 5.8508 0.5853 -0.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005469161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:13 Heat of formation + Delta-G solvation = -112.826636 kcal Electronic energy + Delta-G solvation = -20200.587754 eV Core-core repulsion = 16842.243788 eV Total energy + Delta-G solvation = -3358.343966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33077 -39.14447 -37.12467 -36.36985 -34.01748 -33.61457 -32.58915 -30.56547 -29.63362 -27.05810 -26.32155 -23.51364 -22.32363 -21.72829 -20.98469 -19.77965 -17.83590 -17.57426 -16.85763 -16.58387 -16.23691 -15.60607 -14.80128 -14.64063 -14.32703 -14.05880 -13.75620 -13.22533 -12.98044 -12.87747 -12.69291 -12.65958 -12.34650 -12.00894 -11.91648 -11.38456 -11.34767 -11.32852 -11.14587 -10.82365 -10.68288 -10.50120 -10.44789 -10.27708 -9.50112 -9.00271 -8.62747 -7.90798 -7.31885 -6.45393 -4.93708 1.14426 1.86165 2.77794 2.86366 3.03799 3.08838 3.10585 3.90216 4.12746 4.41074 4.45617 4.63024 4.68523 4.87062 5.08986 5.21259 5.23756 5.35748 5.38940 5.41103 5.51529 5.69407 5.76043 5.82827 5.89380 5.94315 6.07541 6.39385 6.47453 6.70962 6.78567 6.88435 7.15246 7.20467 7.57580 7.86832 7.97843 8.01493 8.73921 9.03483 10.23796 10.44566 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.034634 B = 0.003152 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.251995 B = 8880.692055 C = 9577.599934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.067 3.933 4 O -0.355 6.355 5 C 0.519 3.481 6 O -0.526 6.526 7 C -0.188 4.188 8 C -0.027 4.027 9 C -0.194 4.194 10 C 0.236 3.764 11 N -0.694 5.694 12 C 0.538 3.462 13 O -0.555 6.555 14 C -0.536 4.536 15 H 0.073 0.927 16 C 0.086 3.914 17 N -0.756 5.756 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.148 4.148 23 C -0.037 4.037 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.397 0.603 34 H 0.274 0.726 35 H 0.146 0.854 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.396 1.961 4.908 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.007 4.007 4 O -0.272 6.272 5 C 0.366 3.634 6 O -0.417 6.417 7 C -0.191 4.191 8 C -0.046 4.046 9 C -0.216 4.216 10 C 0.134 3.866 11 N -0.336 5.336 12 C 0.346 3.654 13 O -0.436 6.436 14 C -0.571 4.571 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.384 5.384 18 Si 0.739 3.261 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.191 1.191 22 C -0.169 4.169 23 C -0.056 4.056 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.231 0.769 34 H 0.085 0.915 35 H 0.164 0.836 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.864 1.403 4.283 14.578 hybrid contribution 1.011 0.520 0.200 1.154 sum -12.853 1.923 4.483 13.748 Atomic orbital electron populations 1.21685 0.94334 1.02417 1.02220 1.21524 0.95946 0.94920 1.03912 1.23062 0.76871 0.98355 1.02419 1.86561 1.22846 1.33272 1.84531 1.21247 0.89275 0.80895 0.71966 1.90779 1.67074 1.36083 1.47725 1.18793 0.88068 0.95137 1.17111 1.20826 0.93738 0.96140 0.93925 1.20830 0.93288 0.97478 1.09962 1.18296 0.85303 0.93309 0.89675 1.44308 1.02565 1.31704 1.54991 1.18457 0.88169 0.79968 0.78854 1.90656 1.72101 1.38010 1.42858 1.20838 0.89052 1.14872 1.32353 0.90848 1.25761 1.00649 0.94025 0.93198 1.69962 1.37192 1.10416 1.20820 0.86300 0.81968 0.78642 0.79184 1.19045 1.20321 1.19064 1.21333 0.93863 0.98379 1.03362 1.21239 0.93453 0.97300 0.93641 0.92404 0.92367 0.91733 0.90646 0.90706 0.91429 0.91394 0.85239 0.85468 0.76901 0.91481 0.83592 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -1.10 6.31 -26.73 -0.17 -1.27 16 3 C 0.07 0.76 5.48 37.16 0.20 0.97 16 4 O -0.36 -5.20 9.46 -40.63 -0.38 -5.58 16 5 C 0.52 8.59 7.89 34.49 0.27 8.86 16 6 O -0.53 -9.44 16.13 -19.27 -0.31 -9.76 16 7 C -0.19 -3.21 5.88 -104.95 -0.62 -3.83 16 8 C -0.03 -0.44 9.58 -39.21 -0.38 -0.82 16 9 C -0.19 -3.23 9.94 -39.42 -0.39 -3.62 16 10 C 0.24 4.67 6.27 -83.81 -0.53 4.15 16 11 N -0.69 -14.65 5.30 -11.19 -0.06 -14.71 16 12 C 0.54 14.19 7.46 -13.07 -0.10 14.10 16 13 O -0.55 -16.55 12.69 5.17 0.07 -16.48 16 14 C -0.54 -13.96 9.54 -35.68 -0.34 -14.30 16 15 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 16 C 0.09 2.22 5.50 -17.35 -0.10 2.12 16 17 N -0.76 -21.20 11.82 55.55 0.66 -20.54 16 18 Si 0.92 18.80 29.56 -169.99 -5.02 13.77 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.15 -3.01 8.62 -39.43 -0.34 -3.35 16 23 C -0.04 -0.65 9.60 -39.22 -0.38 -1.03 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.13 1.90 7.64 -52.49 -0.40 1.49 16 32 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.40 7.02 8.79 -40.82 -0.36 6.66 16 34 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 35 H 0.15 3.34 6.41 -52.48 -0.34 3.00 16 36 H 0.13 2.04 7.60 -52.48 -0.40 1.64 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -31.96 319.90 -7.14 -39.10 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.42 Total: 8.04 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.48 Total: 1.34 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.60 Total: -35.25 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.63 Total: -31.82 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.96 -7.14 -39.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005469161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.725 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds