Wall clock time and date at job start Mon Mar 30 2020 02:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 O 1.45195 * 109.47573 * 179.97438 * 3 2 1 5 5 C 1.34752 * 117.00253 * 179.97438 * 4 3 2 6 6 O 1.21510 * 119.99813 * 0.02562 * 5 4 3 7 7 C 1.47460 * 119.99938 * 180.02562 * 5 4 3 8 8 C 1.39839 * 120.06259 * 180.02562 * 7 5 4 9 9 C 1.37614 * 119.92694 * 180.29959 * 8 7 5 10 10 C 1.39272 * 120.06806 * 359.44512 * 9 8 7 11 11 N 1.39071 * 119.93249 * 180.25894 * 10 9 8 12 12 C 1.34771 * 119.99977 * 213.94198 * 11 10 9 13 13 O 1.21726 * 120.00405 * 5.27935 * 12 11 10 14 14 C 1.46202 * 120.00170 * 185.27935 * 12 11 10 15 15 H 1.07998 * 119.99946 * 359.97438 * 14 12 11 16 16 C 1.40121 * 120.00108 * 179.97438 * 14 12 11 17 17 N 1.30640 * 120.00103 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00046 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.47148 * 59.99808 * 18 16 14 20 20 H 1.48499 * 109.47211 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47203 * 300.00119 * 18 16 14 22 22 C 1.39269 * 120.13235 * 0.55252 * 10 9 8 23 23 C 1.37607 * 120.07078 * 359.73074 * 22 10 9 24 24 H 1.08997 * 109.46832 * 299.99586 * 1 2 3 25 25 H 1.08996 * 109.46733 * 60.00082 * 1 2 3 26 26 H 1.08995 * 109.46574 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47001 * 240.00048 * 2 1 3 28 28 H 1.09002 * 109.47399 * 120.00088 * 2 1 3 29 29 H 1.09004 * 109.47029 * 60.00065 * 3 2 1 30 30 H 1.09002 * 109.46941 * 300.00369 * 3 2 1 31 31 H 1.07993 * 120.04073 * 0.02610 * 8 7 5 32 32 H 1.08001 * 119.96523 * 179.70162 * 9 8 7 33 33 H 0.97001 * 119.99876 * 33.94416 * 11 10 9 34 34 H 0.96998 * 119.99977 * 180.02562 * 17 16 14 35 35 H 1.08003 * 119.96184 * 179.69770 * 22 10 9 36 36 H 1.08004 * 120.03417 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4920 1.4425 0.0006 5 6 4.1038 2.6432 0.0002 6 8 3.4420 3.6622 -0.0003 7 6 5.5764 2.7203 0.0002 8 6 6.2126 3.9656 0.0002 9 6 7.5870 4.0344 -0.0060 10 6 8.3442 2.8654 -0.0007 11 7 9.7330 2.9382 -0.0016 12 6 10.4564 2.0035 -0.6491 13 8 9.8951 1.1512 -1.3126 14 6 11.9153 2.0130 -0.5546 15 1 12.4134 2.7694 0.0338 16 6 12.6674 1.0408 -1.2273 17 7 12.0649 0.1255 -1.9386 18 14 14.5315 1.0534 -1.1071 19 1 14.9370 0.9012 0.3134 20 1 15.0864 -0.0708 -1.9030 21 1 15.0529 2.3395 -1.6356 22 6 7.7134 1.6238 -0.0007 23 6 6.3394 1.5485 -0.0003 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.6261 4.8724 0.0007 32 1 8.0790 4.9958 -0.0108 33 1 10.1810 3.6618 0.4639 34 1 12.5855 -0.5477 -2.4040 35 1 8.3032 0.7191 -0.0015 36 1 5.8508 0.5853 -0.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005469161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:13 Heat of formation + Delta-G solvation = -132.280264 kcal Electronic energy + Delta-G solvation = -20201.431327 eV Core-core repulsion = 16842.243788 eV Total energy + Delta-G solvation = -3359.187539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.64224 -40.71379 -38.76241 -37.66576 -35.44049 -34.77127 -34.55016 -31.99187 -31.17818 -28.58520 -27.58235 -24.94329 -23.77303 -22.61054 -22.40411 -21.40702 -19.57077 -18.94020 -18.25451 -17.76145 -17.66040 -17.51436 -16.18535 -15.80285 -15.68432 -15.54273 -15.06823 -14.81391 -14.55165 -14.24328 -13.93915 -13.77177 -13.45684 -13.38271 -13.14206 -13.04271 -12.76629 -12.73423 -12.22415 -12.13489 -12.08758 -12.05745 -11.59711 -11.46181 -11.16122 -10.89740 -10.12793 -9.84997 -8.95571 -8.38999 -6.97104 -0.28188 0.44514 1.39827 1.41525 1.51060 1.56214 1.63291 2.20239 2.35592 2.77679 2.88148 3.53817 3.65169 3.89527 3.91486 3.94636 3.99810 4.26980 4.35921 4.43046 4.52229 4.56674 4.65412 4.74796 5.01860 5.09423 5.15149 5.16529 5.24372 5.29960 5.33411 5.38962 5.45257 5.66957 5.77035 6.12337 6.24234 6.69515 6.76040 7.25329 8.29356 8.53781 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.034634 B = 0.003152 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.251995 B = 8880.692055 C = 9577.599934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.059 3.941 4 O -0.359 6.359 5 C 0.523 3.477 6 O -0.539 6.539 7 C -0.187 4.187 8 C -0.022 4.022 9 C -0.175 4.175 10 C 0.208 3.792 11 N -0.687 5.687 12 C 0.527 3.473 13 O -0.601 6.601 14 C -0.562 4.562 15 H 0.096 0.904 16 C 0.030 3.970 17 N -0.810 5.810 18 Si 1.001 2.999 19 H -0.253 1.253 20 H -0.275 1.275 21 H -0.253 1.253 22 C -0.169 4.169 23 C -0.031 4.031 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.413 0.587 34 H 0.279 0.721 35 H 0.110 0.890 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.751 3.330 5.607 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.014 4.014 4 O -0.276 6.276 5 C 0.371 3.629 6 O -0.431 6.431 7 C -0.190 4.190 8 C -0.041 4.041 9 C -0.196 4.196 10 C 0.108 3.892 11 N -0.330 5.330 12 C 0.334 3.666 13 O -0.487 6.487 14 C -0.597 4.597 15 H 0.114 0.886 16 C -0.187 4.187 17 N -0.439 5.439 18 Si 0.820 3.180 19 H -0.177 1.177 20 H -0.200 1.200 21 H -0.177 1.177 22 C -0.191 4.191 23 C -0.050 4.050 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.250 0.750 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.262 2.808 5.020 15.378 hybrid contribution 0.899 0.108 0.017 0.906 sum -13.363 2.916 5.037 14.575 Atomic orbital electron populations 1.21683 0.92551 1.03409 1.02675 1.21556 0.97334 0.93082 1.03936 1.23408 0.74908 1.00289 1.02783 1.86557 1.24872 1.32227 1.83925 1.21082 0.88960 0.81246 0.71649 1.90772 1.67282 1.36614 1.48428 1.19012 0.88725 0.95250 1.15971 1.21129 0.93684 0.96701 0.92611 1.21071 0.93285 0.97518 1.07757 1.18520 0.84802 0.94293 0.91560 1.43802 1.03189 1.31203 1.54834 1.18770 0.88971 0.80134 0.78703 1.90618 1.73075 1.40048 1.44923 1.21399 0.89467 1.15834 1.32986 0.88588 1.26998 1.06630 0.93010 0.92054 1.70126 1.39796 1.11663 1.22328 0.85015 0.74261 0.79059 0.79712 1.17740 1.20022 1.17711 1.21137 0.94823 0.97617 1.05492 1.21273 0.92325 0.98470 0.92959 0.91851 0.92044 0.90493 0.90837 0.90523 0.90887 0.91219 0.82834 0.82250 0.75040 0.91133 0.87217 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.12 -1.95 6.31 30.60 0.19 -1.76 16 3 C 0.06 1.27 5.48 71.98 0.39 1.66 16 4 O -0.36 -10.07 9.46 -56.63 -0.54 -10.61 16 5 C 0.52 16.51 7.89 70.25 0.55 17.07 16 6 O -0.54 -18.30 16.13 19.80 0.32 -17.98 16 7 C -0.19 -6.13 5.88 -20.07 -0.12 -6.25 16 8 C -0.02 -0.68 9.58 22.51 0.22 -0.46 16 9 C -0.18 -5.49 9.94 22.37 0.22 -5.27 16 10 C 0.21 8.29 6.27 38.49 0.24 8.53 16 11 N -0.69 -29.34 5.30 -307.51 -1.63 -30.96 16 12 C 0.53 28.69 7.46 86.31 0.64 29.33 16 13 O -0.60 -37.74 12.69 -4.43 -0.06 -37.80 16 14 C -0.56 -29.61 9.54 24.80 0.24 -29.38 16 15 H 0.10 4.43 7.85 -2.91 -0.02 4.41 16 16 C 0.03 1.57 5.50 85.33 0.47 2.04 16 17 N -0.81 -47.00 11.82 21.85 0.26 -46.74 16 18 Si 1.00 38.33 29.56 68.60 2.03 40.36 16 19 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 20 H -0.28 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.25 -9.11 7.11 99.48 0.71 -8.41 16 22 C -0.17 -7.13 8.62 22.37 0.19 -6.94 16 23 C -0.03 -1.10 9.60 22.51 0.22 -0.89 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.15 3.96 7.64 -2.91 -0.02 3.94 16 32 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.41 14.38 8.79 -92.71 -0.82 13.57 16 34 H 0.28 14.67 8.29 -92.71 -0.77 13.90 16 35 H 0.11 5.43 6.41 -2.91 -0.02 5.41 16 36 H 0.14 4.55 7.60 -2.91 -0.02 4.53 16 Total: -1.00 -71.34 319.90 4.85 -66.48 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.29 Total: 30.53 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 4.18 Total: 6.72 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -1.37 Total: -77.70 kcal Atomic # 8 Polarization: -66.12 SS G_CDS: -0.27 Total: -66.39 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -71.34 4.85 -66.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005469161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.797 kcal (2) G-P(sol) polarization free energy of solvation -71.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds