Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 H 1.09004 * 109.47379 * 54.99740 * 3 2 1 5 5 C 1.50695 * 109.47290 * 174.99947 * 3 2 1 6 6 H 1.07996 * 120.00157 * 119.99588 * 5 3 2 7 7 C 1.37878 * 119.99947 * 300.00418 * 5 3 2 8 8 N 1.31519 * 120.00086 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00063 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47324 * 90.00183 * 9 7 5 11 11 H 1.48497 * 109.47059 * 210.00848 * 9 7 5 12 12 H 1.48508 * 109.46751 * 330.00352 * 9 7 5 13 13 N 1.46507 * 109.46714 * 294.99972 * 3 2 1 14 14 C 1.34776 * 119.99947 * 85.00744 * 13 3 2 15 15 O 1.21529 * 120.00104 * 359.97438 * 14 13 3 16 16 C 1.47956 * 119.99641 * 179.97438 * 14 13 3 17 17 C 1.39196 * 120.19585 * 55.09694 * 16 14 13 18 18 C 1.38235 * 119.99709 * 179.97438 * 17 16 14 19 19 C 1.38370 * 120.40813 * 0.02562 * 18 17 16 20 20 C 1.38213 * 120.40070 * 359.97438 * 19 18 17 21 21 C 1.39264 * 119.98795 * 359.73763 * 20 19 18 22 22 C 1.47836 * 120.20203 * 180.27996 * 21 20 19 23 23 O 1.21444 * 120.00248 * 186.17691 * 22 21 20 24 24 O 1.34704 * 119.99752 * 6.17443 * 22 21 20 25 25 H 1.09001 * 109.47148 * 300.00339 * 1 2 3 26 26 H 1.09000 * 109.46757 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47085 * 60.00238 * 1 2 3 28 28 H 1.08996 * 109.46771 * 119.99765 * 2 1 3 29 29 H 1.08991 * 109.47155 * 239.99664 * 2 1 3 30 30 H 0.96996 * 119.99482 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99918 * 264.99349 * 13 3 2 32 32 H 1.08000 * 120.00660 * 359.97438 * 17 16 14 33 33 H 1.08001 * 119.79932 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.80328 * 179.97438 * 19 18 17 35 35 H 1.08004 * 120.00274 * 179.97438 * 20 19 18 36 36 H 0.96702 * 116.99826 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8806 1.3363 9 14 3.0963 0.1100 2.5707 10 1 2.8745 -1.3260 2.2645 11 1 3.7941 0.2361 3.8754 12 1 1.7880 0.8093 2.6394 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3412 2.6319 -0.4325 16 6 0.0439 3.3262 -2.6311 17 6 0.1057 2.6294 -3.8345 18 6 -0.2613 3.2516 -5.0131 19 6 -0.6908 4.5670 -5.0064 20 6 -0.7586 5.2746 -3.8210 21 6 -0.3986 4.6621 -2.6232 22 6 -0.4752 5.4126 -1.3518 23 8 -0.0557 4.9148 -0.3266 24 8 -1.0103 6.6486 -1.3306 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 5.8769 0.4828 2.1132 31 1 2.2719 2.1232 -1.9978 32 1 0.4403 1.6026 -3.8475 33 1 -0.2117 2.7081 -5.9450 34 1 -0.9748 5.0437 -5.9330 35 1 -1.0944 6.3011 -3.8233 36 1 -1.0383 7.1002 -0.4759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054162535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = -93.083769 kcal Electronic energy + Delta-G solvation = -21760.294364 eV Core-core repulsion = 18402.806513 eV Total energy + Delta-G solvation = -3357.487851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60796 -39.11384 -38.13308 -35.94920 -35.13243 -32.44567 -31.84530 -31.55828 -30.70195 -27.46808 -24.99640 -23.54935 -22.61950 -21.68531 -20.49979 -19.54196 -18.20159 -17.80467 -16.98476 -16.16274 -15.71147 -15.56290 -15.35229 -15.01416 -14.61459 -14.14921 -13.94128 -13.37191 -13.23752 -12.93876 -12.77941 -12.24238 -12.06352 -11.83313 -11.72587 -11.58676 -11.38339 -11.04429 -10.85901 -10.58313 -10.29120 -9.87265 -9.52408 -9.24086 -9.18769 -9.17645 -8.99964 -8.69515 -7.96543 -6.16227 -4.17860 0.53237 1.01586 2.62268 2.99728 3.26642 3.30387 3.39330 3.46408 3.65959 3.96481 4.36721 4.64406 4.74595 4.84073 5.12592 5.18017 5.23615 5.31153 5.58811 5.74283 5.99521 6.01837 6.06312 6.15100 6.18572 6.23002 6.56231 6.58137 6.69781 6.75205 6.89885 7.00860 7.32350 7.38762 7.58814 8.02031 8.21015 8.58395 8.81537 9.02157 9.45194 10.95970 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.005550 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.817210 B = 5043.660041 C = 5380.081089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.244 3.756 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.894 5.894 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.693 5.693 14 C 0.546 3.454 15 O -0.515 6.515 16 C -0.056 4.056 17 C -0.104 4.104 18 C -0.089 4.089 19 C -0.125 4.125 20 C -0.068 4.068 21 C -0.086 4.086 22 C 0.505 3.495 23 O -0.461 6.461 24 O -0.520 6.520 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.267 0.733 31 H 0.393 0.607 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 7.220 -13.340 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.141 3.859 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.531 5.531 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.341 5.341 14 C 0.329 3.671 15 O -0.391 6.391 16 C -0.059 4.059 17 C -0.122 4.122 18 C -0.107 4.107 19 C -0.143 4.143 20 C -0.087 4.087 21 C -0.088 4.088 22 C 0.346 3.654 23 O -0.345 6.345 24 O -0.333 6.333 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.226 0.774 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -12.716 6.778 -12.582 19.130 hybrid contribution -0.083 -0.153 0.898 0.915 sum -12.799 6.625 -11.684 18.554 Atomic orbital electron populations 1.21881 0.96987 0.98952 1.02292 1.22292 0.94319 0.99984 1.01089 1.19158 0.95593 0.88302 0.82861 0.93062 1.21048 0.88621 1.39513 1.07813 0.90247 1.24819 0.94851 0.95203 0.97608 1.69872 1.08675 1.44719 1.29816 0.86916 0.81126 0.79864 0.80937 1.20254 1.22193 1.18374 1.46057 1.14280 1.55764 1.18025 1.17948 0.83522 0.79220 0.86379 1.90774 1.51542 1.58367 1.38419 1.20364 0.97357 0.92857 0.95354 1.21320 0.99486 1.00656 0.90746 1.21386 0.96190 0.94887 0.98199 1.21275 1.00236 0.94698 0.98098 1.21421 0.95874 1.00354 0.91017 1.18965 1.05216 0.93091 0.91518 1.20843 0.75657 0.79625 0.89262 1.91115 1.42123 1.67153 1.34146 1.84483 1.76608 1.30278 1.41960 0.92818 0.94972 0.93067 0.92755 0.92289 0.92356 0.77358 0.84273 0.84836 0.84934 0.84130 0.72859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.67 16 2 C -0.14 -3.14 5.11 -26.73 -0.14 -3.28 16 3 C 0.24 6.03 1.83 -69.08 -0.13 5.90 16 4 H 0.05 1.43 6.63 -51.93 -0.34 1.09 16 5 C -0.53 -14.78 9.31 -34.44 -0.32 -15.10 16 6 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 7 C 0.08 2.26 5.45 -17.82 -0.10 2.16 16 8 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 9 Si 0.88 22.37 24.41 -169.99 -4.15 18.22 16 10 H -0.28 -6.72 6.83 56.52 0.39 -6.33 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.26 -6.61 6.53 56.52 0.37 -6.24 16 13 N -0.69 -14.50 5.00 -55.84 -0.28 -14.78 16 14 C 0.55 11.07 4.48 -12.28 -0.06 11.02 16 15 O -0.51 -12.20 11.84 -18.72 -0.22 -12.42 16 16 C -0.06 -0.88 5.67 -104.62 -0.59 -1.48 16 17 C -0.10 -1.24 9.74 -39.23 -0.38 -1.63 16 18 C -0.09 -0.80 10.03 -39.53 -0.40 -1.20 16 19 C -0.12 -1.08 10.03 -39.54 -0.40 -1.48 16 20 C -0.07 -0.73 9.61 -39.21 -0.38 -1.11 16 21 C -0.09 -1.26 5.90 -104.65 -0.62 -1.88 16 22 C 0.51 8.17 8.17 34.66 0.28 8.45 16 23 O -0.46 -9.68 13.75 -27.22 -0.37 -10.05 16 24 O -0.52 -6.02 12.70 -40.50 -0.51 -6.54 16 25 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.03 5.64 -51.93 -0.29 0.74 16 28 H 0.05 1.30 3.22 -51.93 -0.17 1.13 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.39 7.31 8.51 -40.82 -0.35 6.96 16 32 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.14 1.21 7.62 -52.48 -0.40 0.81 16 36 H 0.41 3.12 9.11 45.56 0.42 3.53 16 LS Contribution 301.29 15.07 4.54 4.54 Total: -1.00 -35.82 301.29 -6.38 -42.20 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.26 Total: 7.31 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.90 Total: -2.29 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.49 Total: -40.98 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.11 Total: -29.01 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.15 Total: 18.22 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.82 -6.38 -42.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054162535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.882 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds