Wall clock time and date at job start Mon Mar 30 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 H 1.09004 * 109.47379 * 54.99740 * 3 2 1 5 5 C 1.50695 * 109.47290 * 174.99947 * 3 2 1 6 6 H 1.07996 * 120.00157 * 119.99588 * 5 3 2 7 7 C 1.37878 * 119.99947 * 300.00418 * 5 3 2 8 8 N 1.31519 * 120.00086 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00063 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47324 * 90.00183 * 9 7 5 11 11 H 1.48497 * 109.47059 * 210.00848 * 9 7 5 12 12 H 1.48508 * 109.46751 * 330.00352 * 9 7 5 13 13 N 1.46507 * 109.46714 * 294.99972 * 3 2 1 14 14 C 1.34776 * 119.99947 * 85.00744 * 13 3 2 15 15 O 1.21529 * 120.00104 * 359.97438 * 14 13 3 16 16 C 1.47956 * 119.99641 * 179.97438 * 14 13 3 17 17 C 1.39196 * 120.19585 * 55.09694 * 16 14 13 18 18 C 1.38235 * 119.99709 * 179.97438 * 17 16 14 19 19 C 1.38370 * 120.40813 * 0.02562 * 18 17 16 20 20 C 1.38213 * 120.40070 * 359.97438 * 19 18 17 21 21 C 1.39264 * 119.98795 * 359.73763 * 20 19 18 22 22 C 1.47836 * 120.20203 * 180.27996 * 21 20 19 23 23 O 1.21444 * 120.00248 * 186.17691 * 22 21 20 24 24 O 1.34704 * 119.99752 * 6.17443 * 22 21 20 25 25 H 1.09001 * 109.47148 * 300.00339 * 1 2 3 26 26 H 1.09000 * 109.46757 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47085 * 60.00238 * 1 2 3 28 28 H 1.08996 * 109.46771 * 119.99765 * 2 1 3 29 29 H 1.08991 * 109.47155 * 239.99664 * 2 1 3 30 30 H 0.96996 * 119.99482 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99918 * 264.99349 * 13 3 2 32 32 H 1.08000 * 120.00660 * 359.97438 * 17 16 14 33 33 H 1.08001 * 119.79932 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.80328 * 179.97438 * 19 18 17 35 35 H 1.08004 * 120.00274 * 179.97438 * 20 19 18 36 36 H 0.96702 * 116.99826 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8806 1.3363 9 14 3.0963 0.1100 2.5707 10 1 2.8745 -1.3260 2.2645 11 1 3.7941 0.2361 3.8754 12 1 1.7880 0.8093 2.6394 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3412 2.6319 -0.4325 16 6 0.0439 3.3262 -2.6311 17 6 0.1057 2.6294 -3.8345 18 6 -0.2613 3.2516 -5.0131 19 6 -0.6908 4.5670 -5.0064 20 6 -0.7586 5.2746 -3.8210 21 6 -0.3986 4.6621 -2.6232 22 6 -0.4752 5.4126 -1.3518 23 8 -0.0557 4.9148 -0.3266 24 8 -1.0103 6.6486 -1.3306 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 5.8769 0.4828 2.1132 31 1 2.2719 2.1232 -1.9978 32 1 0.4403 1.6026 -3.8475 33 1 -0.2117 2.7081 -5.9450 34 1 -0.9748 5.0437 -5.9330 35 1 -1.0944 6.3011 -3.8233 36 1 -1.0383 7.1002 -0.4759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054162535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:45 Heat of formation + Delta-G solvation = -120.346461 kcal Electronic energy + Delta-G solvation = -21761.476563 eV Core-core repulsion = 18402.806513 eV Total energy + Delta-G solvation = -3358.670050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80405 -40.50068 -39.27379 -37.25230 -36.84011 -34.42666 -33.50215 -32.47315 -31.91688 -29.41440 -26.14407 -24.83528 -24.28908 -22.93396 -21.92339 -21.19566 -19.57439 -19.05915 -18.37905 -17.73861 -17.49207 -16.82419 -16.58801 -16.31502 -15.85381 -15.51000 -15.36907 -15.03128 -14.71551 -14.24813 -14.10341 -13.83818 -13.72320 -13.43847 -13.01962 -12.94137 -12.79630 -12.55624 -12.48094 -12.35189 -11.89148 -11.60874 -11.38225 -11.25674 -10.88185 -10.70539 -10.12036 -10.03583 -9.73138 -8.40858 -6.45713 -0.45707 0.15069 1.22460 1.31509 1.42728 1.55336 1.85858 1.98937 2.23736 2.42220 2.77446 2.95000 3.70877 3.83295 4.05671 4.09720 4.21157 4.29312 4.35818 4.40653 4.44448 4.70506 4.82947 4.93604 4.97201 5.10056 5.18158 5.22347 5.29226 5.38660 5.40021 5.50311 5.56054 5.66289 5.81390 6.13292 6.54782 6.85601 6.95059 7.17585 7.48242 8.74556 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.005550 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.817210 B = 5043.660041 C = 5380.081089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.135 4.135 3 C 0.253 3.747 4 H 0.011 0.989 5 C -0.533 4.533 6 H 0.055 0.945 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.935 3.065 10 H -0.252 1.252 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.695 5.695 14 C 0.546 3.454 15 O -0.556 6.556 16 C -0.090 4.090 17 C -0.105 4.105 18 C -0.072 4.072 19 C -0.106 4.106 20 C -0.059 4.059 21 C -0.116 4.116 22 C 0.505 3.495 23 O -0.526 6.526 24 O -0.501 6.501 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.271 0.729 31 H 0.403 0.597 32 H 0.147 0.853 33 H 0.176 0.824 34 H 0.179 0.821 35 H 0.164 0.836 36 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.306 7.222 -16.628 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.173 4.173 3 C 0.148 3.852 4 H 0.029 0.971 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.762 3.238 10 H -0.178 1.178 11 H -0.218 1.218 12 H -0.194 1.194 13 N -0.345 5.345 14 C 0.333 3.667 15 O -0.434 6.434 16 C -0.093 4.093 17 C -0.123 4.123 18 C -0.090 4.090 19 C -0.123 4.123 20 C -0.077 4.077 21 C -0.118 4.118 22 C 0.350 3.650 23 O -0.416 6.416 24 O -0.315 6.315 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.238 0.762 32 H 0.165 0.835 33 H 0.194 0.806 34 H 0.197 0.803 35 H 0.181 0.819 36 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -14.563 6.811 -15.917 22.623 hybrid contribution 0.453 0.021 1.748 1.806 sum -14.109 6.832 -14.169 21.131 Atomic orbital electron populations 1.21753 0.95333 1.00612 1.01296 1.22183 0.95727 0.98088 1.01303 1.18750 0.93227 0.89675 0.83547 0.97077 1.21267 0.90225 1.38517 1.07079 0.92695 1.25511 0.95758 0.95881 0.99654 1.69971 1.10123 1.46178 1.30858 0.86057 0.79028 0.80176 0.78498 1.17776 1.21825 1.19428 1.45895 1.15270 1.56294 1.16995 1.18613 0.82323 0.78052 0.87719 1.90729 1.52580 1.59500 1.40634 1.20078 1.00975 0.93963 0.94296 1.21529 0.99326 1.01052 0.90430 1.21881 0.93589 0.95189 0.98340 1.21846 0.97400 0.94259 0.98819 1.21737 0.94516 1.01379 0.90110 1.19104 1.07480 0.92948 0.92264 1.21359 0.74217 0.80181 0.89289 1.91091 1.45329 1.68767 1.36407 1.84439 1.75331 1.28539 1.43214 0.95134 0.91755 0.92869 0.93774 0.90618 0.92010 0.76209 0.83476 0.80632 0.80348 0.81882 0.70939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.51 71.98 0.61 -4.85 16 2 C -0.13 -6.11 5.11 30.60 0.16 -5.95 16 3 C 0.25 12.95 1.83 44.24 0.08 13.03 16 4 H 0.01 0.67 6.63 -2.39 -0.02 0.66 16 5 C -0.53 -30.74 9.31 25.60 0.24 -30.50 16 6 H 0.05 3.36 7.98 -2.91 -0.02 3.33 16 7 C 0.03 1.87 5.45 84.65 0.46 2.33 16 8 N -0.93 -57.66 13.96 21.45 0.30 -57.36 16 9 Si 0.94 47.11 24.41 68.60 1.67 48.79 16 10 H -0.25 -11.71 6.83 99.48 0.68 -11.03 16 11 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.27 -13.92 6.53 99.48 0.65 -13.27 16 13 N -0.70 -30.20 5.00 -448.87 -2.25 -32.45 16 14 C 0.55 22.99 4.48 86.82 0.39 23.38 16 15 O -0.56 -27.73 11.84 19.20 0.23 -27.51 16 16 C -0.09 -2.82 5.67 -19.86 -0.11 -2.93 16 17 C -0.10 -2.26 9.74 22.50 0.22 -2.05 16 18 C -0.07 -0.94 10.03 22.30 0.22 -0.72 16 19 C -0.11 -1.22 10.03 22.30 0.22 -1.00 16 20 C -0.06 -1.06 9.61 22.51 0.22 -0.84 16 21 C -0.12 -3.32 5.90 -19.88 -0.12 -3.43 16 22 C 0.51 16.73 8.17 70.36 0.58 17.31 16 23 O -0.53 -23.55 13.75 27.67 0.38 -23.17 16 24 O -0.50 -11.26 12.70 -56.14 -0.71 -11.98 16 25 H 0.03 1.37 7.84 -2.39 -0.02 1.35 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 2.15 5.64 -2.38 -0.01 2.13 16 28 H 0.04 2.08 3.22 -2.39 -0.01 2.08 16 29 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.40 15.50 8.51 -92.71 -0.79 14.71 16 32 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 34 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 35 H 0.16 2.11 7.62 -2.91 -0.02 2.09 16 36 H 0.43 6.36 9.11 -74.06 -0.67 5.68 16 Total: -1.00 -83.80 301.29 2.38 -81.42 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.41 Total: 18.47 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 3.17 Total: 3.78 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -1.95 Total: -89.81 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -0.11 Total: -62.65 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.67 Total: 48.79 kcal Total: -83.80 2.38 -81.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054162535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.926 kcal (2) G-P(sol) polarization free energy of solvation -83.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds