Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47007 * 2 1 4 4 H 1.08992 * 109.47325 * 305.00048 * 3 2 1 5 5 C 1.50703 * 109.47011 * 184.99928 * 3 2 1 6 6 H 1.07996 * 120.00136 * 239.99958 * 5 3 2 7 7 C 1.37875 * 119.99752 * 60.00401 * 5 3 2 8 8 N 1.31519 * 120.00443 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99812 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47068 * 59.99889 * 9 7 5 11 11 H 1.48503 * 109.46981 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47156 * 300.00034 * 9 7 5 13 13 N 1.46500 * 109.47161 * 65.00061 * 3 2 1 14 14 C 1.34777 * 120.00307 * 275.00244 * 13 3 2 15 15 O 1.21534 * 119.99658 * 359.97438 * 14 13 3 16 16 C 1.47955 * 120.00086 * 179.97438 * 14 13 3 17 17 C 1.39197 * 120.19676 * 305.26350 * 16 14 13 18 18 C 1.38237 * 119.99629 * 180.27726 * 17 16 14 19 19 C 1.38359 * 120.40775 * 359.48966 * 18 17 16 20 20 C 1.38213 * 120.40374 * 0.51029 * 19 18 17 21 21 C 1.39263 * 119.98578 * 359.75191 * 20 19 18 22 22 C 1.47841 * 120.19777 * 180.02562 * 21 20 19 23 23 O 1.21457 * 119.99728 * 173.77601 * 22 21 20 24 24 O 1.34699 * 120.00348 * 353.76950 * 22 21 20 25 25 H 1.08996 * 109.47324 * 299.99992 * 1 2 3 26 26 H 1.09004 * 109.47414 * 59.99910 * 1 2 3 27 27 H 1.09000 * 109.47284 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47130 * 240.00179 * 2 1 3 29 29 H 1.08997 * 109.47516 * 120.00463 * 2 1 3 30 30 H 0.96997 * 120.00141 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99993 * 94.99599 * 13 3 2 32 32 H 1.07993 * 120.00082 * 0.02562 * 17 16 14 33 33 H 1.07993 * 119.79081 * 179.75089 * 18 17 16 34 34 H 1.07998 * 119.80387 * 180.28004 * 19 18 17 35 35 H 1.08000 * 120.00932 * 179.76017 * 20 19 18 36 36 H 0.96700 * 117.00136 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2350 11 1 6.3977 0.2168 -2.6504 12 1 6.4994 2.2815 -1.3821 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3671 15 8 -0.3410 2.6325 0.4323 16 6 0.0435 3.3253 2.6315 17 6 0.1121 2.6300 3.8354 18 6 -0.2602 3.2498 5.0136 19 6 -0.6923 4.5642 5.0074 20 6 -0.7669 5.2703 3.8216 21 6 -0.4010 4.6605 2.6242 22 6 -0.4785 5.4116 1.3531 23 8 -0.0533 4.9169 0.3286 24 8 -1.0207 6.6444 1.3312 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0617 -2.9496 31 1 2.2719 2.1231 1.9978 32 1 0.4523 1.6051 3.8485 33 1 -0.2095 2.7059 5.9453 34 1 -0.9765 5.0402 5.9341 35 1 -1.1087 6.2948 3.8235 36 1 -1.0496 7.0962 0.4767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054162536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -101.078107 kcal Electronic energy + Delta-G solvation = -21670.931814 eV Core-core repulsion = 18313.097302 eV Total energy + Delta-G solvation = -3357.834512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51577 -38.98543 -37.97828 -35.86098 -34.87242 -32.40776 -31.52769 -31.46902 -30.37364 -26.95417 -24.89669 -23.51594 -22.83205 -21.50294 -20.17899 -19.26547 -18.10548 -17.69870 -16.87760 -15.90662 -15.61210 -15.30925 -15.20681 -14.89651 -14.48325 -14.15062 -13.79450 -13.16339 -13.11407 -12.78060 -12.60938 -11.99434 -11.87133 -11.57078 -11.40048 -11.30102 -11.19061 -10.95305 -10.78154 -10.32790 -10.17916 -10.12045 -9.57003 -9.18128 -9.10223 -9.00412 -8.87761 -8.43161 -7.71070 -6.06280 -4.15173 0.60086 1.08171 2.68745 3.06152 3.28977 3.34004 3.35249 3.43815 3.77786 4.10121 4.40651 4.70901 4.80220 4.90532 5.20940 5.25120 5.33978 5.39978 5.66991 5.81299 6.07977 6.21639 6.26129 6.43746 6.50326 6.62594 6.64423 6.71433 7.08518 7.26807 7.43131 7.54340 7.67912 7.79685 7.98475 8.09323 8.24387 8.73697 8.84680 9.22364 9.51743 10.99179 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.005204 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.913096 B = 5379.198932 C = 5577.820304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.700 5.700 14 C 0.543 3.457 15 O -0.513 6.513 16 C -0.054 4.054 17 C -0.105 4.105 18 C -0.089 4.089 19 C -0.127 4.127 20 C -0.069 4.069 21 C -0.087 4.087 22 C 0.504 3.496 23 O -0.458 6.458 24 O -0.521 6.521 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.233 8.138 14.486 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.326 3.674 15 O -0.390 6.390 16 C -0.058 4.058 17 C -0.123 4.123 18 C -0.107 4.107 19 C -0.145 4.145 20 C -0.087 4.087 21 C -0.089 4.089 22 C 0.345 3.655 23 O -0.343 6.343 24 O -0.334 6.334 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -7.617 7.637 13.637 17.388 hybrid contribution 1.249 0.314 -0.251 1.312 sum -6.368 7.951 13.386 16.821 Atomic orbital electron populations 1.21843 0.98411 0.97949 1.01254 1.21940 0.92553 0.99833 1.02252 1.18786 0.94120 0.88974 0.81009 0.93065 1.21193 0.90743 1.38865 1.06267 0.92228 1.24873 0.98497 0.94895 0.95373 1.69888 1.35132 1.37648 1.09340 0.86528 0.85013 0.78264 0.77394 1.20199 1.21146 1.20246 1.46395 1.14031 1.55817 1.18596 1.17920 0.83782 0.79455 0.86222 1.90780 1.51481 1.58385 1.38333 1.20488 0.96905 0.92775 0.95613 1.21325 0.99566 1.00658 0.90772 1.21372 0.96298 0.94878 0.98187 1.21250 1.00491 0.94730 0.98047 1.21412 0.95942 1.00330 0.91060 1.18975 1.05258 0.93176 0.91474 1.20859 0.75798 0.79590 0.89289 1.91132 1.41990 1.67019 1.34110 1.84480 1.76420 1.30585 1.41944 0.94430 0.93101 0.95869 0.88256 0.95061 0.92567 0.78160 0.84337 0.84940 0.85030 0.84213 0.72918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 7.12 2.24 -69.08 -0.15 6.97 16 4 H 0.05 1.58 7.58 -51.93 -0.39 1.19 16 5 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.28 11.29 55.43 0.63 -24.65 16 9 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.70 -15.32 5.00 -55.85 -0.28 -15.60 16 14 C 0.54 11.63 4.48 -12.28 -0.06 11.57 16 15 O -0.51 -12.93 11.84 -18.71 -0.22 -13.15 16 16 C -0.05 -0.90 5.67 -104.62 -0.59 -1.49 16 17 C -0.10 -1.34 9.73 -39.23 -0.38 -1.72 16 18 C -0.09 -0.86 10.03 -39.54 -0.40 -1.26 16 19 C -0.13 -1.16 10.03 -39.55 -0.40 -1.56 16 20 C -0.07 -0.78 9.61 -39.21 -0.38 -1.15 16 21 C -0.09 -1.33 5.90 -104.65 -0.62 -1.95 16 22 C 0.50 8.47 8.17 34.66 0.28 8.76 16 23 O -0.46 -9.99 13.76 -27.23 -0.37 -10.37 16 24 O -0.52 -6.31 12.70 -40.49 -0.51 -6.82 16 25 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 26 H 0.05 1.26 7.85 -51.93 -0.41 0.85 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.39 7.39 8.50 -40.82 -0.35 7.05 16 32 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 1.27 7.62 -52.49 -0.40 0.87 16 36 H 0.41 3.32 9.11 45.56 0.42 3.74 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -34.69 308.05 -7.45 -42.14 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.39 Total: 8.81 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.91 Total: -1.00 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.35 Total: -40.26 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.11 Total: -30.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.69 -7.45 -42.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054162536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.943 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds