Wall clock time and date at job start Mon Mar 30 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47007 * 2 1 4 4 H 1.08992 * 109.47325 * 305.00048 * 3 2 1 5 5 C 1.50703 * 109.47011 * 184.99928 * 3 2 1 6 6 H 1.07996 * 120.00136 * 239.99958 * 5 3 2 7 7 C 1.37875 * 119.99752 * 60.00401 * 5 3 2 8 8 N 1.31519 * 120.00443 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99812 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47068 * 59.99889 * 9 7 5 11 11 H 1.48503 * 109.46981 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47156 * 300.00034 * 9 7 5 13 13 N 1.46500 * 109.47161 * 65.00061 * 3 2 1 14 14 C 1.34777 * 120.00307 * 275.00244 * 13 3 2 15 15 O 1.21534 * 119.99658 * 359.97438 * 14 13 3 16 16 C 1.47955 * 120.00086 * 179.97438 * 14 13 3 17 17 C 1.39197 * 120.19676 * 305.26350 * 16 14 13 18 18 C 1.38237 * 119.99629 * 180.27726 * 17 16 14 19 19 C 1.38359 * 120.40775 * 359.48966 * 18 17 16 20 20 C 1.38213 * 120.40374 * 0.51029 * 19 18 17 21 21 C 1.39263 * 119.98578 * 359.75191 * 20 19 18 22 22 C 1.47841 * 120.19777 * 180.02562 * 21 20 19 23 23 O 1.21457 * 119.99728 * 173.77601 * 22 21 20 24 24 O 1.34699 * 120.00348 * 353.76950 * 22 21 20 25 25 H 1.08996 * 109.47324 * 299.99992 * 1 2 3 26 26 H 1.09004 * 109.47414 * 59.99910 * 1 2 3 27 27 H 1.09000 * 109.47284 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47130 * 240.00179 * 2 1 3 29 29 H 1.08997 * 109.47516 * 120.00463 * 2 1 3 30 30 H 0.96997 * 120.00141 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99993 * 94.99599 * 13 3 2 32 32 H 1.07993 * 120.00082 * 0.02562 * 17 16 14 33 33 H 1.07993 * 119.79081 * 179.75089 * 18 17 16 34 34 H 1.07998 * 119.80387 * 180.28004 * 19 18 17 35 35 H 1.08000 * 120.00932 * 179.76017 * 20 19 18 36 36 H 0.96700 * 117.00136 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2350 11 1 6.3977 0.2168 -2.6504 12 1 6.4994 2.2815 -1.3821 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3671 15 8 -0.3410 2.6325 0.4323 16 6 0.0435 3.3253 2.6315 17 6 0.1121 2.6300 3.8354 18 6 -0.2602 3.2498 5.0136 19 6 -0.6923 4.5642 5.0074 20 6 -0.7669 5.2703 3.8216 21 6 -0.4010 4.6605 2.6242 22 6 -0.4785 5.4116 1.3531 23 8 -0.0533 4.9169 0.3286 24 8 -1.0207 6.6444 1.3312 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0617 -2.9496 31 1 2.2719 2.1231 1.9978 32 1 0.4523 1.6051 3.8485 33 1 -0.2095 2.7059 5.9453 34 1 -0.9765 5.0402 5.9341 35 1 -1.1087 6.2948 3.8235 36 1 -1.0496 7.0962 0.4767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054162536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:47 Heat of formation + Delta-G solvation = -126.244595 kcal Electronic energy + Delta-G solvation = -21672.023115 eV Core-core repulsion = 18313.097302 eV Total energy + Delta-G solvation = -3358.925813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76639 -40.41945 -39.22039 -37.17270 -36.73574 -34.32021 -33.13004 -32.46158 -31.82126 -28.94276 -26.13183 -25.07329 -24.29833 -22.77480 -21.72372 -21.07374 -19.45182 -19.02337 -18.22149 -17.55414 -17.26971 -16.70805 -16.54129 -16.32308 -15.80752 -15.51829 -15.22063 -14.71677 -14.58677 -14.23012 -13.96043 -13.59863 -13.35748 -13.19487 -12.92806 -12.92574 -12.67088 -12.54927 -12.41724 -12.18745 -12.06739 -11.66608 -11.50318 -11.07311 -10.67556 -10.51439 -10.11331 -10.01741 -9.58651 -8.16510 -6.34528 -0.44197 0.16196 1.42186 1.45333 1.52994 1.56129 1.93773 2.00532 2.35544 2.58855 2.80120 3.12313 3.75156 3.89700 4.06470 4.11506 4.36566 4.41739 4.46774 4.54851 4.70283 4.76526 4.93884 5.04285 5.20134 5.24630 5.30388 5.39144 5.42995 5.54933 5.56676 5.63390 5.78568 5.82750 5.94135 6.16363 6.73052 6.94235 6.99859 7.32563 7.61239 8.89054 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.005204 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.913096 B = 5379.198932 C = 5577.820304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.118 4.118 3 C 0.282 3.718 4 H -0.012 1.012 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.973 3.027 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.700 5.700 14 C 0.542 3.458 15 O -0.562 6.562 16 C -0.089 4.089 17 C -0.106 4.106 18 C -0.071 4.071 19 C -0.106 4.106 20 C -0.059 4.059 21 C -0.117 4.117 22 C 0.504 3.496 23 O -0.527 6.527 24 O -0.501 6.501 25 H 0.042 0.958 26 H 0.019 0.981 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.400 0.600 32 H 0.145 0.855 33 H 0.177 0.823 34 H 0.180 0.820 35 H 0.164 0.836 36 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 8.870 18.793 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.157 4.157 3 C 0.179 3.821 4 H 0.006 0.994 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.185 1.185 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.349 5.349 14 C 0.328 3.672 15 O -0.441 6.441 16 C -0.092 4.092 17 C -0.125 4.125 18 C -0.089 4.089 19 C -0.124 4.124 20 C -0.077 4.077 21 C -0.118 4.118 22 C 0.348 3.652 23 O -0.416 6.416 24 O -0.315 6.315 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.163 0.837 33 H 0.194 0.806 34 H 0.198 0.802 35 H 0.182 0.818 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -7.420 8.411 18.004 21.212 hybrid contribution 1.075 0.211 -1.483 1.844 sum -6.345 8.623 16.521 19.686 Atomic orbital electron populations 1.21667 0.97140 0.99165 0.99971 1.21764 0.93594 0.98822 1.01523 1.18330 0.93634 0.89115 0.81039 0.99410 1.21535 0.91335 1.39043 1.06881 0.91295 1.25809 1.03585 0.94295 0.94844 1.70058 1.37224 1.38283 1.09844 0.85396 0.78778 0.78332 0.77800 1.18458 1.20934 1.20005 1.46153 1.14998 1.56173 1.17551 1.18666 0.82620 0.78296 0.87636 1.90734 1.52724 1.59750 1.40864 1.20143 1.00740 0.93973 0.94353 1.21511 0.99524 1.00957 0.90483 1.21872 0.93576 0.95195 0.98256 1.21839 0.97488 0.94225 0.98800 1.21738 0.94479 1.01391 0.90072 1.19105 1.07532 0.92956 0.92252 1.21394 0.74310 0.80151 0.89311 1.91115 1.45315 1.68692 1.36482 1.84433 1.75098 1.28774 1.43190 0.93936 0.96195 0.93120 0.90952 0.93476 0.92567 0.76574 0.83733 0.80583 0.80245 0.81835 0.70988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 8.51 71.98 0.61 -5.25 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.96 16 3 C 0.28 15.64 2.24 44.25 0.10 15.74 16 4 H -0.01 -0.81 7.58 -2.39 -0.02 -0.83 16 5 C -0.55 -30.85 8.73 25.60 0.22 -30.63 16 6 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 7 C 0.01 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -54.70 11.29 21.45 0.24 -54.46 16 9 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 N -0.70 -32.12 5.00 -448.89 -2.24 -34.37 16 14 C 0.54 24.48 4.48 86.82 0.39 24.87 16 15 O -0.56 -30.54 11.84 19.17 0.23 -30.31 16 16 C -0.09 -2.96 5.67 -19.86 -0.11 -3.07 16 17 C -0.11 -2.46 9.73 22.50 0.22 -2.24 16 18 C -0.07 -0.99 10.03 22.30 0.22 -0.77 16 19 C -0.11 -1.30 10.03 22.29 0.22 -1.08 16 20 C -0.06 -1.10 9.61 22.51 0.22 -0.88 16 21 C -0.12 -3.50 5.90 -19.88 -0.12 -3.62 16 22 C 0.50 17.55 8.17 70.36 0.57 18.12 16 23 O -0.53 -24.82 13.76 27.62 0.38 -24.44 16 24 O -0.50 -11.88 12.70 -56.09 -0.71 -12.60 16 25 H 0.04 1.97 5.64 -2.39 -0.01 1.95 16 26 H 0.02 1.03 7.85 -2.38 -0.02 1.01 16 27 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 4.16 5.95 -2.38 -0.01 4.15 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.40 15.73 8.50 -92.71 -0.79 14.94 16 32 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.18 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.16 2.23 7.62 -2.91 -0.02 2.21 16 36 H 0.43 6.90 9.11 -74.06 -0.67 6.22 16 Total: -1.00 -83.84 308.05 2.75 -81.09 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -0.33 Total: 22.92 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 3.17 Total: 6.50 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -2.00 Total: -88.83 kcal Atomic # 8 Polarization: -67.24 SS G_CDS: -0.11 Total: -67.34 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -83.84 2.75 -81.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054162536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.156 kcal (2) G-P(sol) polarization free energy of solvation -83.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds