Wall clock time and date at job start Mon Mar 30 2020 01:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47218 * 2 1 4 4 H 1.09000 * 109.46582 * 54.99900 * 3 2 1 5 5 N 1.46498 * 109.46767 * 295.00090 * 3 2 1 6 6 C 1.34777 * 119.99950 * 154.99445 * 5 3 2 7 7 O 1.21593 * 119.99956 * 0.02562 * 6 5 3 8 8 C 1.47643 * 120.00215 * 179.97438 * 6 5 3 9 9 C 1.40010 * 119.89312 * 359.73000 * 8 6 5 10 10 C 1.36321 * 120.10270 * 179.76161 * 9 8 6 11 11 C 1.40891 * 119.89145 * 0.51253 * 10 9 8 12 12 C 1.41111 * 120.10254 * 179.72262 * 11 10 9 13 13 H 1.07990 * 119.99978 * 204.64783 * 12 11 10 14 14 C 1.40234 * 119.99986 * 24.64542 * 12 11 10 15 15 N 1.30643 * 119.99783 * 17.87599 * 14 12 11 16 16 Si 1.86799 * 119.99924 * 197.87876 * 14 12 11 17 17 H 1.48504 * 109.47030 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47265 * 119.99914 * 16 14 12 19 19 H 1.48498 * 109.46927 * 239.99926 * 16 14 12 20 20 C 1.40885 * 119.79649 * 359.73907 * 11 10 9 21 21 C 1.36325 * 119.88984 * 0.02562 * 20 11 10 22 22 C 1.50694 * 109.47161 * 175.00316 * 3 2 1 23 23 O 1.20828 * 119.99988 * 120.27682 * 22 3 2 24 24 O 1.34232 * 119.99907 * 299.99957 * 22 3 2 25 25 H 1.08995 * 109.46802 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46548 * 300.00208 * 1 2 3 27 27 H 1.08992 * 109.47286 * 59.99723 * 1 2 3 28 28 H 1.08996 * 109.47142 * 240.00250 * 2 1 3 29 29 H 1.09001 * 109.47307 * 119.99658 * 2 1 3 30 30 H 0.96998 * 120.00595 * 335.00148 * 5 3 2 31 31 H 1.07993 * 119.94825 * 0.02562 * 9 8 6 32 32 H 1.08001 * 120.05141 * 180.23592 * 10 9 8 33 33 H 0.97004 * 119.99912 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.05786 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.94580 * 179.97438 * 21 20 11 36 36 H 0.96695 * 116.99902 * 180.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0975 -1.2518 6 6 1.5255 3.4384 -1.2996 7 8 1.7332 4.1046 -0.3038 8 6 1.1355 4.0985 -2.5613 9 6 0.9035 3.3299 -3.7083 10 6 0.5384 3.9345 -4.8743 11 6 0.4051 5.3361 -4.9266 12 6 0.0332 5.9671 -6.1327 13 1 0.3037 6.9977 -6.3087 14 6 -0.6878 5.2559 -7.1028 15 7 -1.3132 4.1565 -6.7761 16 14 -0.7536 5.8806 -8.8620 17 1 0.0311 7.1367 -8.9709 18 1 -0.1798 4.8575 -9.7725 19 1 -2.1649 6.1447 -9.2410 20 6 0.6448 6.1058 -3.7712 21 6 1.0048 5.4918 -2.6085 22 6 3.5419 1.4444 0.1237 23 8 4.2189 1.9462 -0.7422 24 8 4.1274 0.8934 1.1987 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.4871 1.5661 -2.0463 31 1 1.0097 2.2559 -3.6682 32 1 0.3559 3.3404 -5.7575 33 1 -1.8122 3.6647 -7.4471 34 1 0.5443 7.1805 -3.8067 35 1 1.1891 6.0810 -1.7223 36 1 5.0934 0.9189 1.2337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:36 Heat of formation + Delta-G solvation = -123.289093 kcal Electronic energy + Delta-G solvation = -20917.524739 eV Core-core repulsion = 17558.727087 eV Total energy + Delta-G solvation = -3358.797652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47996 -38.92930 -37.21371 -36.04026 -35.56166 -33.88667 -32.17893 -30.13746 -29.44990 -27.82437 -25.73792 -22.76731 -22.30731 -21.13978 -20.62251 -19.76271 -18.05153 -17.54202 -17.06885 -16.63664 -15.97492 -15.38985 -15.33038 -14.15565 -14.07568 -13.90246 -13.83569 -13.49049 -13.16695 -12.82357 -12.57346 -12.12572 -12.09533 -11.94537 -11.61758 -11.40205 -11.30016 -11.25304 -11.11843 -10.95174 -10.67760 -10.48823 -10.05482 -9.57583 -9.36169 -9.08684 -8.86922 -7.72766 -7.55691 -7.05039 -4.61263 2.17914 2.29158 2.83960 2.94368 2.97177 3.00604 3.04058 3.65624 3.73542 3.89527 4.53368 4.58884 4.85052 5.03860 5.30070 5.48359 5.54343 5.58162 5.77727 5.84513 6.02246 6.05320 6.15546 6.31055 6.51725 6.70573 6.76868 6.81678 7.02178 7.12182 7.42629 7.61987 7.76360 7.85418 7.95388 8.05724 8.12640 8.39057 8.62217 8.74379 8.97349 9.86931 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028936 B = 0.003917 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.419616 B = 7146.537137 C = 7488.429816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.161 3.839 4 H 0.124 0.876 5 N -0.720 5.720 6 C 0.580 3.420 7 O -0.572 6.572 8 C -0.282 4.282 9 C -0.060 4.060 10 C -0.178 4.178 11 C 0.129 3.871 12 C -0.441 4.441 13 H 0.086 0.914 14 C 0.075 3.925 15 N -0.771 5.771 16 Si 0.913 3.087 17 H -0.257 1.257 18 H -0.269 1.269 19 H -0.271 1.271 20 C -0.239 4.239 21 C -0.020 4.020 22 C 0.460 3.540 23 O -0.499 6.499 24 O -0.520 6.520 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.404 0.596 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.286 0.714 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 -9.616 7.015 12.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C 0.053 3.947 4 H 0.141 0.859 5 N -0.374 5.374 6 C 0.376 3.624 7 O -0.454 6.454 8 C -0.287 4.287 9 C -0.079 4.079 10 C -0.197 4.197 11 C 0.126 3.874 12 C -0.469 4.469 13 H 0.104 0.896 14 C -0.147 4.147 15 N -0.394 5.394 16 Si 0.736 3.264 17 H -0.180 1.180 18 H -0.194 1.194 19 H -0.197 1.197 20 C -0.258 4.258 21 C -0.039 4.039 22 C 0.300 3.700 23 O -0.384 6.384 24 O -0.332 6.332 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.240 0.760 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.306 -9.189 7.353 11.993 hybrid contribution 0.580 -0.062 -1.176 1.313 sum 2.886 -9.252 6.177 11.492 Atomic orbital electron populations 1.21773 0.93904 1.02121 1.03164 1.21764 0.97735 0.92802 1.03883 1.20351 0.86244 0.96352 0.91757 0.85866 1.45732 1.71880 1.08017 1.11761 1.18640 0.74456 0.80379 0.88963 1.90635 1.53264 1.64121 1.37346 1.18794 1.23233 0.94042 0.92613 1.20454 0.97669 0.96594 0.93224 1.20970 1.06142 0.95301 0.97304 1.17798 0.85913 0.92076 0.91637 1.19896 1.28413 0.99310 0.99263 0.89635 1.26105 0.92968 0.94065 1.01542 1.69750 1.19971 1.13566 1.36113 0.86170 0.79083 0.80360 0.80740 1.18040 1.19367 1.19654 1.20715 1.13544 0.98415 0.93133 1.20358 0.94000 0.92761 0.96828 1.24432 0.93082 0.73949 0.78576 1.90745 1.65500 1.41253 1.40949 1.84526 1.28464 1.74753 1.45453 0.92043 0.92148 0.91686 0.90896 0.89300 0.75955 0.89355 0.86159 0.90271 0.88332 0.88096 0.73634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.80 37.16 0.36 -1.07 16 2 C -0.12 -1.20 5.44 -26.72 -0.15 -1.35 16 3 C 0.16 2.24 2.48 -69.08 -0.17 2.07 16 4 H 0.12 1.78 7.58 -51.93 -0.39 1.39 16 5 N -0.72 -12.11 4.01 -55.94 -0.22 -12.33 16 6 C 0.58 12.50 7.59 -12.42 -0.09 12.40 16 7 O -0.57 -13.71 15.99 5.28 0.08 -13.63 16 8 C -0.28 -6.55 5.89 -104.73 -0.62 -7.17 16 9 C -0.06 -1.35 9.47 -39.61 -0.38 -1.72 16 10 C -0.18 -4.37 8.64 -39.27 -0.34 -4.71 16 11 C 0.13 3.30 5.58 -106.80 -0.60 2.70 16 12 C -0.44 -10.99 9.04 -37.74 -0.34 -11.33 16 13 H 0.09 2.04 7.91 -52.49 -0.42 1.63 16 14 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 15 N -0.77 -18.32 10.95 55.56 0.61 -17.71 16 16 Si 0.91 17.22 29.60 -169.99 -5.03 12.19 16 17 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 18 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 20 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 21 C -0.02 -0.49 9.52 -39.60 -0.38 -0.86 16 22 C 0.46 6.85 7.66 36.00 0.28 7.13 16 23 O -0.50 -9.50 17.07 -18.75 -0.32 -9.82 16 24 O -0.52 -5.66 13.23 -39.26 -0.52 -6.18 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.72 7.99 -51.93 -0.42 0.31 16 30 H 0.40 6.11 6.60 -40.82 -0.27 5.84 16 31 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 32 H 0.12 2.98 6.16 -52.49 -0.32 2.66 16 33 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 34 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 36 H 0.41 2.77 9.10 45.56 0.41 3.19 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -31.39 316.02 -6.89 -38.28 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -3.36 Total: 12.92 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.89 Total: -8.48 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.38 Total: -30.04 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.76 Total: -29.63 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.39 -6.89 -38.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.011 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds