Wall clock time and date at job start Mon Mar 30 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47218 * 2 1 4 4 H 1.09000 * 109.46582 * 54.99900 * 3 2 1 5 5 N 1.46498 * 109.46767 * 295.00090 * 3 2 1 6 6 C 1.34777 * 119.99950 * 154.99445 * 5 3 2 7 7 O 1.21593 * 119.99956 * 0.02562 * 6 5 3 8 8 C 1.47643 * 120.00215 * 179.97438 * 6 5 3 9 9 C 1.40010 * 119.89312 * 359.73000 * 8 6 5 10 10 C 1.36321 * 120.10270 * 179.76161 * 9 8 6 11 11 C 1.40891 * 119.89145 * 0.51253 * 10 9 8 12 12 C 1.41111 * 120.10254 * 179.72262 * 11 10 9 13 13 H 1.07990 * 119.99978 * 204.64783 * 12 11 10 14 14 C 1.40234 * 119.99986 * 24.64542 * 12 11 10 15 15 N 1.30643 * 119.99783 * 17.87599 * 14 12 11 16 16 Si 1.86799 * 119.99924 * 197.87876 * 14 12 11 17 17 H 1.48504 * 109.47030 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47265 * 119.99914 * 16 14 12 19 19 H 1.48498 * 109.46927 * 239.99926 * 16 14 12 20 20 C 1.40885 * 119.79649 * 359.73907 * 11 10 9 21 21 C 1.36325 * 119.88984 * 0.02562 * 20 11 10 22 22 C 1.50694 * 109.47161 * 175.00316 * 3 2 1 23 23 O 1.20828 * 119.99988 * 120.27682 * 22 3 2 24 24 O 1.34232 * 119.99907 * 299.99957 * 22 3 2 25 25 H 1.08995 * 109.46802 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46548 * 300.00208 * 1 2 3 27 27 H 1.08992 * 109.47286 * 59.99723 * 1 2 3 28 28 H 1.08996 * 109.47142 * 240.00250 * 2 1 3 29 29 H 1.09001 * 109.47307 * 119.99658 * 2 1 3 30 30 H 0.96998 * 120.00595 * 335.00148 * 5 3 2 31 31 H 1.07993 * 119.94825 * 0.02562 * 9 8 6 32 32 H 1.08001 * 120.05141 * 180.23592 * 10 9 8 33 33 H 0.97004 * 119.99912 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.05786 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.94580 * 179.97438 * 21 20 11 36 36 H 0.96695 * 116.99902 * 180.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0975 -1.2518 6 6 1.5255 3.4384 -1.2996 7 8 1.7332 4.1046 -0.3038 8 6 1.1355 4.0985 -2.5613 9 6 0.9035 3.3299 -3.7083 10 6 0.5384 3.9345 -4.8743 11 6 0.4051 5.3361 -4.9266 12 6 0.0332 5.9671 -6.1327 13 1 0.3037 6.9977 -6.3087 14 6 -0.6878 5.2559 -7.1028 15 7 -1.3132 4.1565 -6.7761 16 14 -0.7536 5.8806 -8.8620 17 1 0.0311 7.1367 -8.9709 18 1 -0.1798 4.8575 -9.7725 19 1 -2.1649 6.1447 -9.2410 20 6 0.6448 6.1058 -3.7712 21 6 1.0048 5.4918 -2.6085 22 6 3.5419 1.4444 0.1237 23 8 4.2189 1.9462 -0.7422 24 8 4.1274 0.8934 1.1987 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.4871 1.5661 -2.0463 31 1 1.0097 2.2559 -3.6682 32 1 0.3559 3.3404 -5.7575 33 1 -1.8122 3.6647 -7.4471 34 1 0.5443 7.1805 -3.8067 35 1 1.1891 6.0810 -1.7223 36 1 5.0934 0.9189 1.2337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:35 Heat of formation + Delta-G solvation = -143.757786 kcal Electronic energy + Delta-G solvation = -20918.412328 eV Core-core repulsion = 17558.727087 eV Total energy + Delta-G solvation = -3359.685242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73473 -40.49056 -38.95034 -37.19716 -36.80801 -35.68561 -33.49080 -31.82071 -31.30673 -29.02789 -27.45455 -24.08986 -23.55591 -22.87272 -21.96888 -21.36824 -19.38020 -19.18153 -18.57314 -17.90150 -17.44042 -16.94969 -16.53064 -15.76461 -15.62636 -15.44333 -15.19282 -14.75609 -14.51427 -14.46973 -13.96090 -13.69909 -13.54496 -13.23966 -13.02332 -12.85684 -12.64910 -12.63449 -12.39517 -12.19878 -11.91368 -11.76462 -11.72611 -11.38774 -11.12867 -10.81350 -10.32429 -9.58969 -9.43430 -8.80386 -6.49322 0.40221 1.12845 1.14260 1.37874 1.41840 1.55633 1.75343 2.14468 2.18251 2.41793 2.79506 3.60917 3.68247 3.94331 4.14347 4.23340 4.30127 4.42682 4.46001 4.59322 4.80870 4.91163 5.02030 5.07527 5.10030 5.14222 5.28568 5.37321 5.42421 5.55818 5.57729 5.79784 5.91714 5.98316 6.21243 6.52363 6.57282 6.75979 6.87512 6.93133 7.32993 8.15128 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.028936 B = 0.003917 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.419616 B = 7146.537137 C = 7488.429816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C 0.154 3.846 4 H 0.119 0.881 5 N -0.705 5.705 6 C 0.580 3.420 7 O -0.602 6.602 8 C -0.295 4.295 9 C -0.051 4.051 10 C -0.198 4.198 11 C 0.102 3.898 12 C -0.472 4.472 13 H 0.085 0.915 14 C 0.039 3.961 15 N -0.795 5.795 16 Si 0.988 3.012 17 H -0.258 1.258 18 H -0.260 1.260 19 H -0.262 1.262 20 C -0.253 4.253 21 C -0.032 4.032 22 C 0.467 3.533 23 O -0.548 6.548 24 O -0.503 6.503 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.413 0.587 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.298 0.702 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 -11.521 6.907 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C 0.047 3.953 4 H 0.137 0.863 5 N -0.358 5.358 6 C 0.374 3.626 7 O -0.486 6.486 8 C -0.300 4.300 9 C -0.070 4.070 10 C -0.217 4.217 11 C 0.099 3.901 12 C -0.499 4.499 13 H 0.103 0.897 14 C -0.180 4.180 15 N -0.419 5.419 16 Si 0.807 3.193 17 H -0.182 1.182 18 H -0.184 1.184 19 H -0.187 1.187 20 C -0.273 4.273 21 C -0.052 4.052 22 C 0.308 3.692 23 O -0.437 6.437 24 O -0.316 6.316 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.251 0.749 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 2.267 -11.157 7.288 13.518 hybrid contribution 0.622 0.444 -0.992 1.252 sum 2.888 -10.713 6.296 12.757 Atomic orbital electron populations 1.21786 0.93604 1.03314 1.02260 1.21795 0.97802 0.89776 1.05627 1.20699 0.86119 0.98614 0.89902 0.86303 1.45530 1.70414 1.06501 1.13399 1.18425 0.74381 0.81901 0.87867 1.90609 1.54705 1.65256 1.37998 1.19114 1.22849 0.94091 0.93906 1.20709 0.95948 0.98306 0.92076 1.21011 1.07605 0.95094 0.97970 1.18147 0.86701 0.92955 0.92328 1.20155 1.29720 0.99824 1.00219 0.89696 1.26921 0.91848 0.94045 1.05226 1.69758 1.19891 1.14311 1.37904 0.85065 0.79347 0.79695 0.75156 1.18173 1.18416 1.18686 1.20854 1.14258 0.98869 0.93295 1.20509 0.94293 0.93632 0.96725 1.24470 0.93267 0.72938 0.78477 1.90741 1.66548 1.43582 1.42855 1.84465 1.30380 1.73422 1.43284 0.89808 0.92302 0.93395 0.89764 0.86836 0.74923 0.85904 0.86687 0.89086 0.87747 0.88005 0.71229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.80 71.98 0.71 -1.76 16 2 C -0.11 -1.83 5.44 30.60 0.17 -1.67 16 3 C 0.15 4.00 2.48 44.25 0.11 4.11 16 4 H 0.12 3.27 7.58 -2.39 -0.02 3.25 16 5 N -0.71 -22.96 4.01 -449.15 -1.80 -24.76 16 6 C 0.58 24.97 7.59 86.73 0.66 25.63 16 7 O -0.60 -29.07 15.99 -4.01 -0.06 -29.13 16 8 C -0.30 -13.84 5.89 -19.93 -0.12 -13.96 16 9 C -0.05 -2.30 9.47 22.25 0.21 -2.09 16 10 C -0.20 -9.86 8.64 22.47 0.19 -9.66 16 11 C 0.10 5.36 5.58 -21.28 -0.12 5.24 16 12 C -0.47 -24.01 9.04 23.46 0.21 -23.79 16 13 H 0.08 4.16 7.91 -2.92 -0.02 4.14 16 14 C 0.04 1.80 5.14 85.35 0.44 2.24 16 15 N -0.80 -37.71 10.95 21.87 0.24 -37.47 16 16 Si 0.99 34.72 29.60 68.60 2.03 36.75 16 17 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 18 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16 19 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 20 C -0.25 -12.81 9.73 22.47 0.22 -12.60 16 21 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 22 C 0.47 13.09 7.66 71.23 0.55 13.63 16 23 O -0.55 -20.43 17.07 21.96 0.37 -20.06 16 24 O -0.50 -9.53 13.23 -51.43 -0.68 -10.21 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.94 7.75 -2.39 -0.02 0.92 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 1.37 7.99 -2.39 -0.02 1.35 16 30 H 0.41 11.80 6.60 -92.71 -0.61 11.19 16 31 H 0.12 4.47 6.37 -2.91 -0.02 4.45 16 32 H 0.12 5.78 6.16 -2.91 -0.02 5.76 16 33 H 0.30 12.44 8.29 -92.71 -0.77 11.67 16 34 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 35 H 0.10 4.89 7.63 -2.91 -0.02 4.87 16 36 H 0.43 4.64 9.10 -74.06 -0.67 3.96 16 Total: -1.00 -69.10 316.02 3.38 -65.72 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.15 Total: 35.22 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.44 Total: -16.06 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -1.56 Total: -62.23 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -0.37 Total: -59.40 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal Total: -69.10 3.38 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.042 kcal (2) G-P(sol) polarization free energy of solvation -69.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds