Wall clock time and date at job start Mon Mar 30 2020 01:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 H 1.09001 * 109.47140 * 305.00442 * 3 2 1 5 5 N 1.46504 * 109.46791 * 65.00165 * 3 2 1 6 6 C 1.34775 * 119.99792 * 205.00168 * 5 3 2 7 7 O 1.21579 * 120.00057 * 359.97438 * 6 5 3 8 8 C 1.47642 * 119.99552 * 179.97438 * 6 5 3 9 9 C 1.40011 * 119.89387 * 179.97438 * 8 6 5 10 10 C 1.36319 * 120.11254 * 179.74664 * 9 8 6 11 11 C 1.40889 * 119.88721 * 0.25206 * 10 9 8 12 12 C 1.41113 * 120.10619 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00340 * 204.64066 * 12 11 10 14 14 C 1.40225 * 119.99501 * 24.64295 * 12 11 10 15 15 N 1.30650 * 120.00211 * 17.87474 * 14 12 11 16 16 Si 1.86794 * 120.00050 * 197.87472 * 14 12 11 17 17 H 1.48504 * 109.47040 * 89.99629 * 16 14 12 18 18 H 1.48498 * 109.47531 * 210.00170 * 16 14 12 19 19 H 1.48505 * 109.47310 * 330.00337 * 16 14 12 20 20 C 1.40889 * 119.79488 * 0.02562 * 11 10 9 21 21 C 1.36320 * 119.88880 * 0.02562 * 20 11 10 22 22 C 1.50699 * 109.47183 * 184.99761 * 3 2 1 23 23 O 1.20824 * 119.99992 * 240.00288 * 22 3 2 24 24 O 1.34229 * 119.99681 * 60.00694 * 22 3 2 25 25 H 1.08991 * 109.47177 * 299.99678 * 1 2 3 26 26 H 1.09005 * 109.47128 * 60.00103 * 1 2 3 27 27 H 1.08996 * 109.47004 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46990 * 240.00481 * 2 1 3 29 29 H 1.08997 * 109.47346 * 120.00484 * 2 1 3 30 30 H 0.97004 * 119.99832 * 24.99594 * 5 3 2 31 31 H 1.08004 * 119.94932 * 0.02562 * 9 8 6 32 32 H 1.07992 * 120.06012 * 180.27807 * 10 9 8 33 33 H 0.97002 * 120.00128 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.05749 * 180.02562 * 20 11 10 35 35 H 1.08002 * 119.94398 * 180.02562 * 21 20 11 36 36 H 0.96705 * 116.99873 * 179.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0974 1.2519 6 6 1.5256 3.4383 1.2997 7 8 1.7333 4.1045 0.3040 8 6 1.1345 4.0983 2.5612 9 6 1.0039 5.4915 2.6086 10 6 0.6380 6.1050 3.7696 11 6 0.3963 5.3351 4.9245 12 6 0.0167 5.9653 6.1287 13 1 0.2107 5.4828 7.0752 14 6 -0.6123 7.2181 6.0962 15 7 -1.1597 7.6459 4.9897 16 14 -0.6677 8.2756 7.6350 17 1 0.5288 9.1543 7.6752 18 1 -1.8952 9.1111 7.6177 19 1 -0.6806 7.4019 8.8359 20 6 0.5347 3.9339 4.8735 21 6 0.9020 3.3296 3.7081 22 6 3.5419 1.4443 -0.1238 23 8 4.2190 1.9416 0.7446 24 8 4.1273 0.8934 -1.1988 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.4871 1.5659 2.0463 31 1 1.1889 6.0808 1.7226 32 1 0.5331 7.1792 3.8040 33 1 -1.5951 8.5123 4.9673 34 1 0.3500 3.3396 5.7561 35 1 1.0080 2.2555 3.6678 36 1 5.0934 0.9189 -1.2339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:38 Heat of formation + Delta-G solvation = -122.999704 kcal Electronic energy + Delta-G solvation = -20871.420608 eV Core-core repulsion = 17512.635505 eV Total energy + Delta-G solvation = -3358.785104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48911 -38.93319 -37.21108 -36.04655 -35.56947 -33.89980 -32.14901 -30.12046 -29.51288 -27.80267 -25.73245 -22.77993 -22.29249 -21.25454 -20.50967 -19.77929 -18.06166 -17.54466 -17.09213 -16.68179 -15.89284 -15.46585 -15.27501 -14.18984 -14.06366 -13.90213 -13.83661 -13.49975 -13.16708 -12.81617 -12.54502 -12.21175 -12.14077 -11.88611 -11.62064 -11.40279 -11.30539 -11.24234 -11.14066 -10.95952 -10.65534 -10.49488 -10.05689 -9.54045 -9.33920 -9.10150 -8.87850 -7.69732 -7.57559 -7.02264 -4.60505 2.19029 2.28435 2.84900 2.95319 2.98277 2.99088 3.04587 3.64451 3.74671 3.90543 4.52904 4.59055 4.83227 5.01870 5.28927 5.47235 5.52423 5.58828 5.75408 5.82432 5.96309 6.04510 6.12860 6.28706 6.51020 6.69487 6.80345 6.85537 7.05406 7.09681 7.43634 7.61106 7.73834 7.87015 7.94603 8.04527 8.15401 8.42990 8.62938 8.75403 8.97518 9.89576 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.035163 B = 0.003692 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.103245 B = 7581.716903 C = 7771.226125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.161 3.839 4 H 0.124 0.876 5 N -0.721 5.721 6 C 0.579 3.421 7 O -0.569 6.569 8 C -0.281 4.281 9 C -0.034 4.034 10 C -0.182 4.182 11 C 0.129 3.871 12 C -0.442 4.442 13 H 0.085 0.915 14 C 0.074 3.926 15 N -0.768 5.768 16 Si 0.914 3.086 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.235 4.235 21 C -0.047 4.047 22 C 0.461 3.539 23 O -0.499 6.499 24 O -0.520 6.520 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.403 0.597 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.287 0.713 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -11.489 -6.063 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.053 3.947 4 H 0.141 0.859 5 N -0.375 5.375 6 C 0.375 3.625 7 O -0.451 6.451 8 C -0.286 4.286 9 C -0.054 4.054 10 C -0.202 4.202 11 C 0.125 3.875 12 C -0.470 4.470 13 H 0.103 0.897 14 C -0.148 4.148 15 N -0.391 5.391 16 Si 0.738 3.262 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.254 4.254 21 C -0.066 4.066 22 C 0.300 3.700 23 O -0.385 6.385 24 O -0.332 6.332 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.239 0.761 31 H 0.118 0.882 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.219 -10.679 -6.600 12.749 hybrid contribution 0.606 0.289 0.997 1.202 sum 2.825 -10.391 -5.603 12.139 Atomic orbital electron populations 1.21772 0.93920 1.02094 1.03162 1.21760 0.97713 0.92808 1.03878 1.20351 0.86260 0.96329 0.91783 0.85861 1.45742 1.72010 1.08005 1.11723 1.18648 0.74505 0.80331 0.89024 1.90638 1.53057 1.64072 1.37301 1.18803 1.23195 0.94306 0.92287 1.20473 0.95125 0.92557 0.97225 1.21009 1.06246 0.99991 0.92915 1.17792 0.85848 0.90865 0.92950 1.19859 1.31544 1.01203 0.94388 0.89689 1.26110 0.92772 0.97867 0.98040 1.69750 1.22304 1.18890 1.28179 0.86202 0.78804 0.79772 0.81449 1.18903 1.19996 1.18296 1.20666 1.13021 0.94660 0.97068 1.20344 0.96695 0.96470 0.93060 1.24427 0.93084 0.73919 0.78603 1.90744 1.65495 1.41377 1.40845 1.84527 1.28479 1.74707 1.45485 0.91737 0.92118 0.92054 0.89293 0.90919 0.76067 0.88181 0.86120 0.90137 0.88434 0.89298 0.73619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.80 37.16 0.36 -1.01 16 2 C -0.12 -1.16 5.44 -26.73 -0.15 -1.31 16 3 C 0.16 2.21 2.48 -69.08 -0.17 2.03 16 4 H 0.12 1.77 7.58 -51.93 -0.39 1.38 16 5 N -0.72 -11.90 4.01 -55.94 -0.22 -12.12 16 6 C 0.58 12.48 7.59 -12.42 -0.09 12.39 16 7 O -0.57 -13.80 15.98 5.30 0.08 -13.71 16 8 C -0.28 -6.53 5.89 -104.73 -0.62 -7.15 16 9 C -0.03 -0.86 9.52 -39.61 -0.38 -1.23 16 10 C -0.18 -4.71 8.64 -39.27 -0.34 -5.05 16 11 C 0.13 3.30 5.58 -106.80 -0.60 2.70 16 12 C -0.44 -11.03 9.04 -37.75 -0.34 -11.37 16 13 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 14 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 15 N -0.77 -18.79 10.95 55.56 0.61 -18.18 16 16 Si 0.91 17.44 29.60 -169.99 -5.03 12.41 16 17 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 18 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 C -0.23 -5.45 9.73 -39.27 -0.38 -5.83 16 21 C -0.05 -1.00 9.47 -39.61 -0.38 -1.38 16 22 C 0.46 6.79 7.66 36.00 0.28 7.07 16 23 O -0.50 -9.43 17.08 -18.75 -0.32 -9.75 16 24 O -0.52 -5.61 13.23 -39.26 -0.52 -6.13 16 25 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.70 8.00 -51.93 -0.42 0.29 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.40 5.84 6.60 -40.82 -0.27 5.58 16 31 H 0.10 2.46 7.63 -52.48 -0.40 2.06 16 32 H 0.12 3.18 6.15 -52.49 -0.32 2.86 16 33 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 34 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.09 1.55 6.37 -52.49 -0.33 1.22 16 36 H 0.41 2.75 9.10 45.56 0.41 3.16 16 LS Contribution 316.03 15.07 4.76 4.76 Total: -1.00 -31.75 316.03 -6.89 -38.64 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -3.36 Total: 12.58 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.89 Total: -8.49 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.38 Total: -30.30 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.75 Total: -29.60 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.75 -6.89 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.361 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds