Wall clock time and date at job start Mon Mar 30 2020 01:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 H 1.09001 * 109.47140 * 305.00442 * 3 2 1 5 5 N 1.46504 * 109.46791 * 65.00165 * 3 2 1 6 6 C 1.34775 * 119.99792 * 205.00168 * 5 3 2 7 7 O 1.21579 * 120.00057 * 359.97438 * 6 5 3 8 8 C 1.47642 * 119.99552 * 179.97438 * 6 5 3 9 9 C 1.40011 * 119.89387 * 179.97438 * 8 6 5 10 10 C 1.36319 * 120.11254 * 179.74664 * 9 8 6 11 11 C 1.40889 * 119.88721 * 0.25206 * 10 9 8 12 12 C 1.41113 * 120.10619 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00340 * 204.64066 * 12 11 10 14 14 C 1.40225 * 119.99501 * 24.64295 * 12 11 10 15 15 N 1.30650 * 120.00211 * 17.87474 * 14 12 11 16 16 Si 1.86794 * 120.00050 * 197.87472 * 14 12 11 17 17 H 1.48504 * 109.47040 * 89.99629 * 16 14 12 18 18 H 1.48498 * 109.47531 * 210.00170 * 16 14 12 19 19 H 1.48505 * 109.47310 * 330.00337 * 16 14 12 20 20 C 1.40889 * 119.79488 * 0.02562 * 11 10 9 21 21 C 1.36320 * 119.88880 * 0.02562 * 20 11 10 22 22 C 1.50699 * 109.47183 * 184.99761 * 3 2 1 23 23 O 1.20824 * 119.99992 * 240.00288 * 22 3 2 24 24 O 1.34229 * 119.99681 * 60.00694 * 22 3 2 25 25 H 1.08991 * 109.47177 * 299.99678 * 1 2 3 26 26 H 1.09005 * 109.47128 * 60.00103 * 1 2 3 27 27 H 1.08996 * 109.47004 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46990 * 240.00481 * 2 1 3 29 29 H 1.08997 * 109.47346 * 120.00484 * 2 1 3 30 30 H 0.97004 * 119.99832 * 24.99594 * 5 3 2 31 31 H 1.08004 * 119.94932 * 0.02562 * 9 8 6 32 32 H 1.07992 * 120.06012 * 180.27807 * 10 9 8 33 33 H 0.97002 * 120.00128 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.05749 * 180.02562 * 20 11 10 35 35 H 1.08002 * 119.94398 * 180.02562 * 21 20 11 36 36 H 0.96705 * 116.99873 * 179.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0974 1.2519 6 6 1.5256 3.4383 1.2997 7 8 1.7333 4.1045 0.3040 8 6 1.1345 4.0983 2.5612 9 6 1.0039 5.4915 2.6086 10 6 0.6380 6.1050 3.7696 11 6 0.3963 5.3351 4.9245 12 6 0.0167 5.9653 6.1287 13 1 0.2107 5.4828 7.0752 14 6 -0.6123 7.2181 6.0962 15 7 -1.1597 7.6459 4.9897 16 14 -0.6677 8.2756 7.6350 17 1 0.5288 9.1543 7.6752 18 1 -1.8952 9.1111 7.6177 19 1 -0.6806 7.4019 8.8359 20 6 0.5347 3.9339 4.8735 21 6 0.9020 3.3296 3.7081 22 6 3.5419 1.4443 -0.1238 23 8 4.2190 1.9416 0.7446 24 8 4.1273 0.8934 -1.1988 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.4871 1.5659 2.0463 31 1 1.1889 6.0808 1.7226 32 1 0.5331 7.1792 3.8040 33 1 -1.5951 8.5123 4.9673 34 1 0.3500 3.3396 5.7561 35 1 1.0080 2.2555 3.6678 36 1 5.0934 0.9189 -1.2339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:37 Heat of formation + Delta-G solvation = -144.094857 kcal Electronic energy + Delta-G solvation = -20872.335363 eV Core-core repulsion = 17512.635505 eV Total energy + Delta-G solvation = -3359.699858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73322 -40.49107 -38.94840 -37.19526 -36.80282 -35.70710 -33.42713 -31.90641 -31.28343 -29.00274 -27.45301 -24.08361 -23.55478 -22.91693 -21.88469 -21.40491 -19.37371 -19.18175 -18.61631 -17.92314 -17.22642 -17.11049 -16.52023 -15.75676 -15.63813 -15.44815 -15.18293 -14.74610 -14.49900 -14.43921 -14.03570 -13.65976 -13.55871 -13.24565 -13.01808 -12.85214 -12.64198 -12.62958 -12.38498 -12.18998 -11.90475 -11.75892 -11.72329 -11.36900 -11.13686 -10.82695 -10.32432 -9.58091 -9.44103 -8.79870 -6.49353 0.40542 1.13323 1.14868 1.37405 1.42218 1.53365 1.75746 2.13708 2.18029 2.41677 2.80291 3.61680 3.69083 3.95104 4.14856 4.23754 4.32642 4.39572 4.46989 4.60077 4.82351 4.96342 5.00796 5.08723 5.10793 5.19426 5.24713 5.37561 5.43620 5.56308 5.57742 5.77261 5.92883 6.00441 6.19052 6.54792 6.59462 6.75672 6.88269 6.93326 7.33975 8.15245 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.035163 B = 0.003692 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.103245 B = 7581.716903 C = 7771.226125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C 0.154 3.846 4 H 0.117 0.883 5 N -0.703 5.703 6 C 0.579 3.421 7 O -0.604 6.604 8 C -0.295 4.295 9 C -0.050 4.050 10 C -0.203 4.203 11 C 0.101 3.899 12 C -0.471 4.471 13 H 0.093 0.907 14 C 0.034 3.966 15 N -0.802 5.802 16 Si 0.990 3.010 17 H -0.263 1.263 18 H -0.266 1.266 19 H -0.250 1.250 20 C -0.246 4.246 21 C -0.035 4.035 22 C 0.467 3.533 23 O -0.547 6.547 24 O -0.503 6.503 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.414 0.586 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.296 0.704 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -13.715 -5.655 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C 0.046 3.954 4 H 0.135 0.865 5 N -0.357 5.357 6 C 0.373 3.627 7 O -0.488 6.488 8 C -0.299 4.299 9 C -0.069 4.069 10 C -0.222 4.222 11 C 0.098 3.902 12 C -0.498 4.498 13 H 0.111 0.889 14 C -0.185 4.185 15 N -0.425 5.425 16 Si 0.809 3.191 17 H -0.188 1.188 18 H -0.190 1.190 19 H -0.174 1.174 20 C -0.265 4.265 21 C -0.054 4.054 22 C 0.308 3.692 23 O -0.437 6.437 24 O -0.316 6.316 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.105 0.895 30 H 0.253 0.747 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.152 0.848 36 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 2.230 -12.980 -6.225 14.567 hybrid contribution 0.648 0.877 0.711 1.302 sum 2.878 -12.103 -5.514 13.608 Atomic orbital electron populations 1.21788 0.93566 1.03338 1.02283 1.21791 0.97817 0.89631 1.05691 1.20699 0.86079 0.98676 0.89910 0.86540 1.45494 1.70440 1.06324 1.13422 1.18442 0.74390 0.81953 0.87872 1.90613 1.54663 1.65355 1.38137 1.19109 1.22880 0.93912 0.94028 1.20543 0.95824 0.93905 0.96654 1.20932 1.08026 0.99413 0.93856 1.18159 0.86617 0.92291 0.93155 1.20180 1.32475 1.02621 0.94489 0.88895 1.27024 0.91659 0.98550 1.01258 1.69801 1.22720 1.19661 1.30334 0.85080 0.78912 0.77784 0.77311 1.18795 1.19043 1.17367 1.20950 1.13062 0.93962 0.98510 1.20687 0.94578 0.98579 0.91563 1.24482 0.93299 0.72903 0.78500 1.90739 1.66546 1.43678 1.42743 1.84467 1.30382 1.73393 1.43362 0.93167 0.92521 0.89745 0.86975 0.89515 0.74738 0.89193 0.87787 0.89318 0.86416 0.84825 0.71237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.80 71.98 0.71 -1.60 16 2 C -0.11 -1.72 5.44 30.59 0.17 -1.55 16 3 C 0.15 3.91 2.48 44.24 0.11 4.02 16 4 H 0.12 3.21 7.58 -2.39 -0.02 3.19 16 5 N -0.70 -22.20 4.01 -449.16 -1.80 -24.00 16 6 C 0.58 24.94 7.59 86.73 0.66 25.60 16 7 O -0.60 -29.79 15.98 -3.97 -0.06 -29.85 16 8 C -0.29 -13.82 5.89 -19.93 -0.12 -13.93 16 9 C -0.05 -2.59 9.52 22.25 0.21 -2.38 16 10 C -0.20 -10.97 8.64 22.47 0.19 -10.78 16 11 C 0.10 5.29 5.58 -21.28 -0.12 5.17 16 12 C -0.47 -23.78 9.04 23.46 0.21 -23.57 16 13 H 0.09 4.38 7.91 -2.91 -0.02 4.36 16 14 C 0.03 1.61 5.14 85.35 0.44 2.05 16 15 N -0.80 -40.25 10.95 21.87 0.24 -40.01 16 16 Si 0.99 35.51 29.60 68.60 2.03 37.54 16 17 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 18 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 19 H -0.25 -8.56 7.11 99.48 0.71 -7.86 16 20 C -0.25 -11.29 9.73 22.47 0.22 -11.07 16 21 C -0.04 -1.48 9.47 22.25 0.21 -1.27 16 22 C 0.47 12.92 7.66 71.24 0.55 13.47 16 23 O -0.55 -20.20 17.08 21.97 0.38 -19.83 16 24 O -0.50 -9.46 13.23 -51.41 -0.68 -10.14 16 25 H 0.05 0.91 7.75 -2.39 -0.02 0.89 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.11 1.29 8.00 -2.38 -0.02 1.27 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.41 10.97 6.60 -92.71 -0.61 10.36 16 31 H 0.09 4.72 7.63 -2.91 -0.02 4.70 16 32 H 0.10 5.83 6.15 -2.91 -0.02 5.82 16 33 H 0.30 13.29 8.29 -92.71 -0.77 12.53 16 34 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 35 H 0.13 4.26 6.37 -2.91 -0.02 4.24 16 36 H 0.43 4.59 9.10 -74.05 -0.67 3.91 16 Total: -1.00 -71.38 316.03 3.38 -68.00 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.15 Total: 34.12 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 3.44 Total: -15.83 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -1.56 Total: -64.01 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -0.37 Total: -59.82 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Total: -71.38 3.38 -68.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.099 kcal (2) G-P(sol) polarization free energy of solvation -71.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds