Wall clock time and date at job start Mon Mar 30 2020 01:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47564 * 2 1 4 4 H 1.09005 * 109.47230 * 305.00558 * 3 2 1 5 5 N 1.46501 * 109.47028 * 65.00336 * 3 2 1 6 6 C 1.34781 * 120.00313 * 205.00550 * 5 3 2 7 7 O 1.21550 * 119.99585 * 359.97438 * 6 5 3 8 8 C 1.47886 * 119.99802 * 180.02562 * 6 5 3 9 9 C 1.39918 * 120.02600 * 359.72100 * 8 6 5 10 10 C 1.38330 * 120.35155 * 179.71906 * 9 8 6 11 11 C 1.37747 * 120.41578 * 0.55902 * 10 9 8 12 12 C 1.40743 * 120.04163 * 359.72242 * 11 10 9 13 13 C 1.41434 * 120.18183 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99935 * 334.92898 * 13 12 11 15 15 C 1.39946 * 120.00052 * 154.92234 * 13 12 11 16 16 N 1.30826 * 119.99853 * 342.59548 * 15 13 12 17 17 Si 1.86801 * 119.99885 * 162.59250 * 15 13 12 18 18 H 1.48493 * 109.47213 * 59.99857 * 17 15 13 19 19 H 1.48494 * 109.47298 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46957 * 300.00175 * 17 15 13 21 21 C 1.38996 * 120.01806 * 179.97438 * 8 6 5 22 22 C 1.50694 * 109.47670 * 185.00350 * 3 2 1 23 23 O 1.20823 * 120.00326 * 240.00395 * 22 3 2 24 24 O 1.34235 * 119.99608 * 59.72623 * 22 3 2 25 25 H 1.09005 * 109.47448 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46345 * 299.99318 * 1 2 3 27 27 H 1.08991 * 109.47403 * 59.99454 * 1 2 3 28 28 H 1.09008 * 109.46486 * 240.00151 * 2 1 3 29 29 H 1.09000 * 109.47340 * 120.00703 * 2 1 3 30 30 H 0.97004 * 119.99584 * 24.99873 * 5 3 2 31 31 H 1.08000 * 119.82340 * 359.97326 * 9 8 6 32 32 H 1.08003 * 119.79076 * 180.25409 * 10 9 8 33 33 H 1.08003 * 119.97993 * 179.73995 * 11 10 9 34 34 H 0.96999 * 119.99781 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.20692 * 359.97438 * 21 8 6 36 36 H 0.96700 * 116.99371 * 180.27669 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6526 2.0974 1.2519 6 6 1.5258 3.4384 1.2997 7 8 1.7333 4.1043 0.3043 8 6 1.1352 4.0994 2.5636 9 6 0.8915 3.3329 3.7085 10 6 0.5315 3.9447 4.8957 11 6 0.3974 5.3140 4.9620 12 6 0.6327 6.1011 3.8192 13 6 0.4964 7.5074 3.8840 14 1 -0.1488 7.9537 4.6262 15 6 1.1977 8.3205 2.9865 16 7 2.2186 7.8371 2.3264 17 14 0.6762 10.0959 2.7310 18 1 0.7621 10.8275 4.0204 19 1 1.5734 10.7372 1.7367 20 1 -0.7221 10.1342 2.2325 21 6 1.0048 5.4824 2.6136 22 6 3.5419 1.4442 -0.1239 23 8 4.2192 1.9415 0.7443 24 8 4.1275 0.8884 -1.1963 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8902 27 1 -0.3634 0.5139 -0.8898 28 1 1.8932 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.4873 1.5659 2.0463 31 1 0.9891 2.2581 3.6661 32 1 0.3495 3.3445 5.7750 33 1 0.1119 5.7840 5.8915 34 1 2.7045 8.4006 1.7040 35 1 1.1882 6.0777 1.7314 36 1 5.0937 0.9102 -1.2294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:42 Heat of formation + Delta-G solvation = -142.099779 kcal Electronic energy + Delta-G solvation = -21166.071512 eV Core-core repulsion = 17806.458167 eV Total energy + Delta-G solvation = -3359.613345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.81049 -40.58285 -38.87741 -37.24407 -36.87359 -35.62167 -33.53198 -31.79862 -31.28783 -28.86194 -27.17857 -24.62048 -23.60128 -22.86369 -21.94023 -21.35707 -19.60413 -19.16902 -18.20046 -17.77836 -17.43318 -16.78374 -16.58153 -16.39734 -15.57721 -15.51908 -15.18860 -14.77441 -14.53102 -14.44184 -14.29029 -13.65765 -13.45178 -13.04118 -12.96924 -12.81272 -12.66095 -12.53982 -12.24672 -12.19473 -11.98950 -11.85035 -11.76989 -11.52602 -11.08079 -10.89827 -10.41533 -9.50730 -9.40026 -8.67279 -6.39767 0.32849 1.00110 1.10057 1.35336 1.47094 1.49891 1.67149 2.09276 2.18634 2.34972 2.78283 3.57475 3.68302 3.89101 4.03908 4.13021 4.40493 4.42947 4.56955 4.57674 4.81185 4.88869 5.06790 5.07274 5.09270 5.17185 5.27044 5.31144 5.43357 5.49977 5.53474 5.83690 5.90216 6.03516 6.26578 6.42104 6.61678 6.86386 6.89588 6.93325 7.18570 8.29488 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.004780 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.285919 B = 5856.577403 C = 6505.565575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C 0.152 3.848 4 H 0.117 0.883 5 N -0.694 5.694 6 C 0.569 3.431 7 O -0.584 6.584 8 C -0.140 4.140 9 C -0.196 4.196 10 C -0.095 4.095 11 C -0.215 4.215 12 C 0.067 3.933 13 C -0.498 4.498 14 H 0.086 0.914 15 C 0.028 3.972 16 N -0.829 5.829 17 Si 0.985 3.015 18 H -0.251 1.251 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.130 4.130 22 C 0.465 3.535 23 O -0.548 6.548 24 O -0.502 6.502 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.418 0.582 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.110 0.890 34 H 0.286 0.714 35 H 0.098 0.902 36 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -15.925 -4.379 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C 0.045 3.955 4 H 0.135 0.865 5 N -0.348 5.348 6 C 0.360 3.640 7 O -0.465 6.465 8 C -0.143 4.143 9 C -0.215 4.215 10 C -0.113 4.113 11 C -0.235 4.235 12 C 0.065 3.935 13 C -0.528 4.528 14 H 0.104 0.896 15 C -0.186 4.186 16 N -0.455 5.455 17 Si 0.805 3.195 18 H -0.175 1.175 19 H -0.198 1.198 20 H -0.183 1.183 21 C -0.151 4.151 22 C 0.307 3.693 23 O -0.438 6.438 24 O -0.315 6.315 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.257 0.743 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -1.547 -15.304 -5.003 16.175 hybrid contribution 0.929 1.106 0.094 1.447 sum -0.618 -14.198 -4.909 15.035 Atomic orbital electron populations 1.21799 0.93366 1.03475 1.02352 1.21802 0.97969 0.89207 1.05858 1.20765 0.86094 0.98962 0.89701 0.86501 1.45508 1.69637 1.05951 1.13739 1.18774 0.74761 0.82334 0.88115 1.90668 1.52464 1.65417 1.37974 1.19721 1.06623 0.94319 0.93616 1.20858 1.09513 0.98721 0.92434 1.20936 0.98668 0.94071 0.97626 1.21430 1.10374 0.94595 0.97099 1.17946 0.90280 0.94311 0.90979 1.19861 1.25189 0.91547 1.16165 0.89578 1.26900 0.92602 1.05948 0.93167 1.69906 1.14404 1.40272 1.20938 0.85216 0.79273 0.75649 0.79392 1.17506 1.19825 1.18264 1.21447 1.02854 0.92521 0.98277 1.24474 0.93339 0.72959 0.78535 1.90758 1.66587 1.43682 1.42746 1.84458 1.30389 1.73176 1.43475 0.89564 0.92954 0.92585 0.86913 0.89274 0.74254 0.84530 0.84136 0.87169 0.90379 0.88445 0.71204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.80 71.98 0.71 -1.48 16 2 C -0.11 -1.67 5.43 30.59 0.17 -1.50 16 3 C 0.15 3.95 2.48 44.24 0.11 4.06 16 4 H 0.12 3.30 7.58 -2.38 -0.02 3.28 16 5 N -0.69 -22.19 4.01 -448.94 -1.80 -24.00 16 6 C 0.57 25.64 7.60 86.80 0.66 26.30 16 7 O -0.58 -30.90 16.00 -3.87 -0.06 -30.97 16 8 C -0.14 -6.78 5.87 -20.13 -0.12 -6.90 16 9 C -0.20 -7.81 9.55 22.70 0.22 -7.59 16 10 C -0.10 -3.80 10.01 22.18 0.22 -3.58 16 11 C -0.22 -10.17 9.78 22.77 0.22 -9.95 16 12 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 13 C -0.50 -27.57 9.05 23.47 0.21 -27.36 16 14 H 0.09 4.45 7.90 -2.91 -0.02 4.43 16 15 C 0.03 1.52 5.14 85.26 0.44 1.96 16 16 N -0.83 -47.82 10.97 21.83 0.24 -47.58 16 17 Si 0.98 40.32 29.59 68.60 2.03 42.35 16 18 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 C -0.13 -7.43 8.23 23.01 0.19 -7.24 16 22 C 0.47 13.46 7.66 71.23 0.55 14.01 16 23 O -0.55 -21.23 17.08 21.97 0.38 -20.85 16 24 O -0.50 -9.99 13.22 -51.46 -0.68 -10.67 16 25 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.05 0.88 7.75 -2.38 -0.02 0.86 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.11 1.28 7.99 -2.38 -0.02 1.26 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.42 10.88 6.62 -92.71 -0.61 10.26 16 31 H 0.14 4.10 6.38 -2.91 -0.02 4.08 16 32 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 33 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 34 H 0.29 15.26 8.30 -92.71 -0.77 14.49 16 35 H 0.10 6.18 5.76 -2.91 -0.02 6.17 16 36 H 0.43 5.14 9.10 -74.06 -0.67 4.46 16 Total: -1.00 -78.30 316.29 3.40 -74.90 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.16 Total: 32.49 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 3.45 Total: -15.68 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -1.56 Total: -71.58 kcal Atomic # 8 Polarization: -62.12 SS G_CDS: -0.37 Total: -62.49 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -78.30 3.40 -74.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.197 kcal (2) G-P(sol) polarization free energy of solvation -78.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds