Wall clock time and date at job start Mon Mar 30 2020 01:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47107 * 2 1 4 4 H 1.08990 * 109.46679 * 178.47785 * 3 2 1 5 5 C 1.50698 * 109.47217 * 298.48335 * 3 2 1 6 6 H 1.07996 * 119.99996 * 119.99462 * 5 3 2 7 7 C 1.37878 * 119.99695 * 300.00117 * 5 3 2 8 8 N 1.31520 * 120.00259 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99822 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47374 * 89.99646 * 9 7 5 11 11 H 1.48504 * 109.47060 * 209.99557 * 9 7 5 12 12 H 1.48503 * 109.46995 * 329.99202 * 9 7 5 13 13 N 1.46506 * 109.46731 * 58.48213 * 3 2 1 14 14 S 1.65594 * 120.00050 * 96.38163 * 13 3 2 15 15 O 1.42095 * 104.27706 * 181.11981 * 14 13 3 16 16 O 1.42090 * 104.27961 * 308.98245 * 14 13 3 17 17 C 1.81409 * 104.44968 * 65.05201 * 14 13 3 18 18 C 1.52999 * 109.47325 * 179.97438 * 17 14 13 19 19 H 1.09002 * 110.27320 * 60.63633 * 18 17 14 20 20 C 1.54943 * 110.30702 * 182.83246 * 18 17 14 21 21 C 1.55306 * 100.93817 * 155.36095 * 20 18 17 22 22 C 1.54381 * 102.25427 * 325.86648 * 21 20 18 23 23 O 1.43235 * 107.58722 * 21.35686 * 22 21 20 24 24 H 1.08997 * 109.47314 * 175.72454 * 1 2 3 25 25 H 1.09002 * 109.46685 * 295.71845 * 1 2 3 26 26 H 1.09001 * 109.47854 * 55.71974 * 1 2 3 27 27 H 1.09001 * 109.47185 * 120.00292 * 2 1 3 28 28 H 1.09000 * 109.46879 * 240.00351 * 2 1 3 29 29 H 0.96999 * 119.99753 * 180.02562 * 8 7 5 30 30 H 0.96997 * 119.99773 * 276.38025 * 13 3 2 31 31 H 1.09001 * 109.46987 * 300.00245 * 17 14 13 32 32 H 1.09005 * 109.46943 * 59.99319 * 17 14 13 33 33 H 1.08996 * 111.12737 * 273.27692 * 20 18 17 34 34 H 1.08997 * 111.12610 * 37.44462 * 20 18 17 35 35 H 1.09003 * 110.84674 * 207.67809 * 21 20 18 36 36 H 1.09001 * 110.84955 * 84.05923 * 21 20 18 37 37 H 1.09004 * 109.83273 * 261.84720 * 22 21 20 38 38 H 1.08998 * 109.83083 * 140.87417 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 0.0273 5 6 1.5686 2.1420 -1.2488 6 1 0.9455 3.0208 -1.1730 7 6 1.9329 1.6599 -2.4881 8 7 2.6920 0.5899 -2.5805 9 14 1.3492 2.5273 -4.0361 10 1 2.3376 3.5652 -4.4247 11 1 1.2115 1.5386 -5.1356 12 1 0.0342 3.1677 -3.7788 13 7 1.5220 2.1436 1.1775 14 16 2.4509 2.2672 2.5428 15 8 1.6290 2.9717 3.4633 16 8 2.8684 0.9345 2.8045 17 6 3.8626 3.2890 2.0387 18 6 4.8056 3.4787 3.2286 19 1 5.1804 2.5141 3.5710 20 6 5.9826 4.4080 2.8390 21 6 6.3905 4.9658 4.2299 22 6 5.0327 5.0509 4.9597 23 8 4.1288 4.1586 4.2976 24 1 -0.3634 -1.0248 -0.0766 25 1 -0.3633 0.4460 0.9259 26 1 -0.3635 0.5788 -0.8491 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.9485 0.2510 -3.4524 30 1 0.6348 2.5353 1.1574 31 1 4.3965 2.7957 1.2265 32 1 3.5048 4.2615 1.7004 33 1 6.7978 3.8417 2.3885 34 1 5.6496 5.2075 2.1774 35 1 6.8422 5.9532 4.1345 36 1 7.0635 4.2779 4.7416 37 1 4.6492 6.0700 4.9098 38 1 5.1530 4.7504 6.0006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063155919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:21 Heat of formation + Delta-G solvation = -131.244346 kcal Electronic energy + Delta-G solvation = -20762.363208 eV Core-core repulsion = 17538.664541 eV Total energy + Delta-G solvation = -3223.698667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.53647 -36.49712 -35.88914 -35.22288 -32.47415 -32.19027 -31.80756 -30.24563 -26.41698 -26.34015 -23.52562 -21.93978 -21.54046 -19.99036 -18.47571 -17.29565 -17.07582 -16.34515 -15.93122 -15.66439 -15.25285 -14.86188 -14.51899 -13.78833 -13.50920 -13.14994 -13.08092 -12.73961 -12.43297 -12.16067 -11.98431 -11.85166 -11.59804 -11.43689 -11.36458 -11.31069 -11.02917 -11.01953 -10.85472 -10.58100 -10.41247 -10.08704 -9.96536 -9.66758 -9.63480 -9.10205 -8.59338 -8.16915 -6.15142 -4.23015 0.94937 3.21499 3.29775 3.31991 3.56166 3.59009 4.21536 4.31918 4.39535 4.63091 4.70167 4.84475 4.95351 5.08962 5.15882 5.19553 5.45301 5.52188 5.59681 5.65823 5.72658 5.91840 6.00680 6.30302 6.46126 6.58925 6.69699 6.83720 7.08729 7.31493 7.49007 7.53962 7.67692 7.87435 8.05978 8.29521 8.80550 9.42887 10.89735 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022506 B = 0.005611 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.826164 B = 4989.052620 C = 5680.524161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 C 0.278 3.722 4 H 0.037 0.963 5 C -0.522 4.522 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 N -1.104 6.104 14 S 2.615 3.385 15 O -0.967 6.967 16 O -0.964 6.964 17 C -0.637 4.637 18 C 0.088 3.912 19 H 0.087 0.913 20 C -0.143 4.143 21 C -0.158 4.158 22 C 0.050 3.950 23 O -0.375 6.375 24 H 0.025 0.975 25 H 0.031 0.969 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.098 0.902 29 H 0.264 0.736 30 H 0.408 0.592 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.518 7.035 8.747 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.175 4.175 3 C 0.173 3.827 4 H 0.055 0.945 5 C -0.561 4.561 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.864 5.864 14 S 2.706 3.294 15 O -0.957 6.957 16 O -0.954 6.954 17 C -0.764 4.764 18 C 0.029 3.971 19 H 0.105 0.895 20 C -0.181 4.181 21 C -0.196 4.196 22 C -0.026 4.026 23 O -0.295 6.295 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.242 0.758 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.399 6.413 9.498 13.126 hybrid contribution -0.001 1.054 -1.615 1.928 sum 6.398 7.467 7.884 12.603 Atomic orbital electron populations 1.21556 0.97823 0.98703 1.00638 1.21941 0.94950 0.98976 1.01638 1.18531 0.93418 0.89022 0.81724 0.94547 1.21272 1.32628 1.12286 0.89956 0.91792 1.24903 0.94927 0.94900 0.99013 1.69870 1.35674 1.22164 1.24653 0.86524 0.79199 0.79255 0.82589 1.20716 1.21141 1.19817 1.55633 1.28212 1.70580 1.31989 1.04641 0.75815 0.75234 0.73715 1.93536 1.64638 1.75870 1.61631 1.93566 1.83931 1.33775 1.84100 1.30803 1.20466 1.18281 1.06839 1.22598 0.91559 0.97156 0.85772 0.89543 1.23269 0.97872 0.99524 0.97455 1.23167 0.97858 1.02577 0.95989 1.23143 0.88700 0.94314 0.96468 1.88556 1.36172 1.58008 1.46747 0.95612 0.94991 0.92050 0.94837 0.88414 0.92584 0.75816 0.83520 0.84471 0.89313 0.89674 0.89809 0.90309 0.91026 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.51 37.16 0.35 -2.44 16 2 C -0.14 -3.21 5.69 -26.73 -0.15 -3.36 16 3 C 0.28 6.45 2.37 -69.08 -0.16 6.28 16 4 H 0.04 0.87 7.17 -51.93 -0.37 0.50 16 5 C -0.52 -12.90 7.51 -34.44 -0.26 -13.16 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.07 1.66 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -23.39 11.31 55.43 0.63 -22.76 16 9 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 N -1.10 -22.26 4.64 -5.88 -0.03 -22.29 16 14 S 2.62 49.97 5.20 -107.50 -0.56 49.41 16 15 O -0.97 -20.41 17.52 -60.83 -1.07 -21.47 16 16 O -0.96 -21.09 17.27 -57.54 -0.99 -22.08 16 17 C -0.64 -9.77 5.72 37.16 0.21 -9.55 16 18 C 0.09 1.23 3.48 -25.71 -0.09 1.14 16 19 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 20 C -0.14 -1.51 6.57 -24.48 -0.16 -1.67 16 21 C -0.16 -1.39 7.02 -24.79 -0.17 -1.56 16 22 C 0.05 0.55 7.79 37.88 0.30 0.84 16 23 O -0.38 -5.76 10.24 -38.42 -0.39 -6.16 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.03 0.64 7.59 -51.93 -0.39 0.24 16 26 H 0.06 1.36 7.12 -51.93 -0.37 0.99 16 27 H 0.03 0.79 7.60 -51.93 -0.39 0.39 16 28 H 0.10 2.52 6.03 -51.93 -0.31 2.20 16 29 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.41 7.74 8.64 -34.47 -0.30 7.44 16 31 H 0.15 2.13 7.46 -51.92 -0.39 1.74 16 32 H 0.14 1.93 8.14 -51.92 -0.42 1.51 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.87 8.06 -51.93 -0.42 0.46 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 318.91 15.07 4.81 4.81 Total: -1.00 -31.24 318.91 -8.73 -39.97 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.87 Total: 7.61 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -0.23 Total: -21.90 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.60 Total: -45.05 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -2.45 Total: -49.71 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 49.97 SS G_CDS: -0.56 Total: 49.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.24 -8.73 -39.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063155919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.273 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds