Wall clock time and date at job start Mon Mar 30 2020 01:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47196 * 2 1 4 4 H 1.09006 * 109.46705 * 305.65096 * 3 2 1 5 5 C 1.50693 * 109.47266 * 185.65369 * 3 2 1 6 6 H 1.08006 * 119.99957 * 242.92535 * 5 3 2 7 7 C 1.37874 * 120.00659 * 62.92312 * 5 3 2 8 8 N 1.31515 * 120.00578 * 195.51629 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 15.51880 * 7 5 3 10 10 H 1.48499 * 109.47219 * 90.49743 * 9 7 5 11 11 H 1.48504 * 109.47056 * 210.50014 * 9 7 5 12 12 H 1.48497 * 109.47297 * 330.49638 * 9 7 5 13 13 N 1.46497 * 109.47060 * 65.65037 * 3 2 1 14 14 S 1.65603 * 120.00062 * 215.56943 * 13 3 2 15 15 O 1.42107 * 104.27468 * 307.60861 * 14 13 3 16 16 O 1.42096 * 104.27622 * 179.75486 * 14 13 3 17 17 C 1.81399 * 104.45231 * 63.68109 * 14 13 3 18 18 C 1.53001 * 109.46959 * 175.50218 * 17 14 13 19 19 H 1.08999 * 110.35426 * 57.85709 * 18 17 14 20 20 C 1.54949 * 110.30598 * 179.97438 * 18 17 14 21 21 C 1.55309 * 100.97775 * 155.33958 * 20 18 17 22 22 C 1.54440 * 102.22909 * 325.91917 * 21 20 18 23 23 O 1.43240 * 107.60477 * 21.29576 * 22 21 20 24 24 H 1.09007 * 109.47121 * 184.74428 * 1 2 3 25 25 H 1.09003 * 109.46609 * 304.73702 * 1 2 3 26 26 H 1.08994 * 109.47680 * 64.73858 * 1 2 3 27 27 H 1.09004 * 109.46773 * 240.00196 * 2 1 3 28 28 H 1.09001 * 109.47498 * 119.99963 * 2 1 3 29 29 H 0.97000 * 120.00006 * 180.02562 * 8 7 5 30 30 H 0.96998 * 120.00038 * 35.56024 * 13 3 2 31 31 H 1.08993 * 109.47272 * 55.50153 * 17 14 13 32 32 H 1.09005 * 109.46694 * 295.50245 * 17 14 13 33 33 H 1.09004 * 111.12379 * 273.27344 * 20 18 17 34 34 H 1.08995 * 111.12574 * 37.40322 * 20 18 17 35 35 H 1.09006 * 110.84652 * 84.07825 * 21 20 18 36 36 H 1.08997 * 110.84477 * 207.69502 * 21 20 18 37 37 H 1.09000 * 109.79072 * 261.79886 * 22 21 20 38 38 H 1.08990 * 109.85040 * 140.83056 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5404 1.4448 -0.1400 6 1 4.1561 1.8438 0.6527 7 6 4.1274 0.9376 -1.2798 8 7 5.4118 0.6551 -1.2882 9 14 3.0982 0.6518 -2.8122 10 1 3.1186 1.8729 -3.6571 11 1 3.6583 -0.4901 -3.5788 12 1 1.6994 0.3454 -2.4191 13 7 1.6659 2.0927 1.2583 14 16 1.2557 3.6971 1.2714 15 8 2.3404 4.3414 0.6175 16 8 0.9541 3.9706 2.6327 17 6 -0.2448 3.7890 0.2561 18 6 -0.7913 5.2178 0.2819 19 1 -0.0379 5.9185 -0.0780 20 6 -2.0744 5.3184 -0.5809 21 6 -2.7760 6.5397 0.0737 22 6 -2.3796 6.3875 1.5586 23 8 -1.2050 5.5694 1.6118 24 1 -0.3634 -1.0242 0.0850 25 1 -0.3632 0.5856 0.8446 26 1 -0.3634 0.4385 -0.9293 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 5.8248 0.2986 -2.0902 30 1 1.6583 1.5835 2.0838 31 1 -0.9950 3.1057 0.6539 32 1 -0.0066 3.5095 -0.7703 33 1 -1.8314 5.5179 -1.6246 34 1 -2.6827 4.4189 -0.4866 35 1 -2.3916 7.4736 -0.3364 36 1 -3.8573 6.4771 -0.0482 37 1 -3.1890 5.9085 2.1095 38 1 -2.1677 7.3669 1.9874 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063155920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:22 Heat of formation + Delta-G solvation = -149.861754 kcal Electronic energy + Delta-G solvation = -20922.242259 eV Core-core repulsion = 17697.736281 eV Total energy + Delta-G solvation = -3224.505978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46733 -38.16936 -37.74020 -36.83048 -34.25559 -33.48109 -32.74299 -32.40551 -29.01210 -27.41739 -24.48063 -22.76688 -22.52338 -22.09173 -20.23312 -19.04388 -18.42698 -18.05920 -17.35340 -17.11191 -16.78676 -16.40929 -15.75505 -15.56327 -15.02936 -14.61700 -14.49388 -14.02037 -13.96690 -13.72766 -13.48293 -13.11171 -13.03883 -12.93157 -12.91490 -12.68593 -12.59775 -12.56015 -12.18293 -12.16759 -11.80198 -11.71353 -11.62756 -11.34908 -11.10881 -10.61654 -10.60320 -9.97421 -8.26098 -6.26559 -0.59080 1.37388 1.42635 1.50083 1.97719 2.38922 2.65431 2.91352 3.07142 3.36244 3.46870 3.66970 3.89886 4.03660 4.12642 4.26302 4.36314 4.40346 4.41248 4.53115 4.58796 4.70960 4.84118 4.87288 4.94592 5.03425 5.04164 5.19766 5.25135 5.29594 5.49314 5.61708 5.71051 5.93412 6.28166 6.47036 6.77295 7.35215 8.92242 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024197 B = 0.005931 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.875867 B = 4719.619560 C = 4937.143132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C 0.257 3.743 4 H 0.047 0.953 5 C -0.539 4.539 6 H 0.022 0.978 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.917 3.083 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.196 1.196 13 N -1.101 6.101 14 S 2.602 3.398 15 O -1.001 7.001 16 O -0.990 6.990 17 C -0.610 4.610 18 C 0.072 3.928 19 H 0.080 0.920 20 C -0.136 4.136 21 C -0.150 4.150 22 C 0.034 3.966 23 O -0.406 6.406 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.265 0.735 30 H 0.414 0.586 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.857 6.108 -1.529 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.150 3.850 4 H 0.065 0.935 5 C -0.578 4.578 6 H 0.040 0.960 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.739 3.261 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.118 1.118 13 N -0.860 5.860 14 S 2.699 3.301 15 O -0.991 6.991 16 O -0.980 6.980 17 C -0.743 4.743 18 C 0.012 3.988 19 H 0.098 0.902 20 C -0.175 4.175 21 C -0.187 4.187 22 C -0.041 4.041 23 O -0.327 6.327 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.248 0.752 31 H 0.187 0.813 32 H 0.185 0.815 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.109 6.758 -1.123 23.146 hybrid contribution 0.503 -0.539 -0.565 0.929 sum -21.606 6.219 -1.688 22.546 Atomic orbital electron populations 1.21894 0.94075 1.02591 1.02489 1.22149 0.96671 0.96554 1.01884 1.18689 0.92463 0.92064 0.81744 0.93510 1.21659 0.92520 1.39968 1.03616 0.95976 1.25924 0.96160 0.94140 1.02418 1.70147 1.14009 1.44734 1.29690 0.86383 0.82937 0.78086 0.78733 1.20211 1.21077 1.11765 1.55225 1.84214 1.29963 1.16554 1.04830 0.77205 0.73165 0.74896 1.93576 1.51892 1.75483 1.78178 1.93509 1.86651 1.83883 1.33995 1.30596 1.20313 1.05440 1.17934 1.22820 0.99660 0.91505 0.84770 0.90212 1.23321 0.93520 1.00250 1.00395 1.23193 1.03265 0.98932 0.93359 1.23459 0.87027 0.95152 0.98494 1.88566 1.46368 1.71095 1.26641 0.91593 0.91583 0.91839 0.92257 0.92434 0.92622 0.75186 0.81325 0.81502 0.87551 0.88315 0.89556 0.87233 0.89854 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.86 71.98 0.71 -3.12 16 2 C -0.13 -4.77 4.77 30.60 0.15 -4.62 16 3 C 0.26 10.93 1.61 44.24 0.07 11.00 16 4 H 0.05 1.82 5.95 -2.38 -0.01 1.81 16 5 C -0.54 -30.82 9.29 25.60 0.24 -30.58 16 6 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 7 C 0.01 0.65 5.32 84.65 0.45 1.10 16 8 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 9 Si 0.92 40.19 25.77 68.60 1.77 41.96 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.20 -6.88 5.41 99.48 0.54 -6.34 16 13 N -1.10 -42.25 4.74 -172.53 -0.82 -43.06 16 14 S 2.60 98.64 5.29 -56.49 -0.30 98.34 16 15 O -1.00 -48.58 17.84 -127.65 -2.28 -50.85 16 16 O -0.99 -41.78 17.42 -124.01 -2.16 -43.94 16 17 C -0.61 -14.86 5.62 71.98 0.40 -14.46 16 18 C 0.07 1.67 3.45 31.26 0.11 1.78 16 19 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 20 C -0.14 -1.91 6.57 32.05 0.21 -1.70 16 21 C -0.15 -1.78 7.02 31.88 0.22 -1.55 16 22 C 0.03 0.61 7.80 72.47 0.56 1.18 16 23 O -0.41 -11.10 10.23 -144.35 -1.48 -12.58 16 24 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 25 H 0.07 1.45 7.65 -2.39 -0.02 1.43 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 2.23 4.70 -2.38 -0.01 2.22 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.41 14.54 8.80 -96.75 -0.85 13.68 16 31 H 0.17 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.17 3.33 7.51 -2.39 -0.02 3.32 16 33 H 0.11 1.14 8.14 -2.38 -0.02 1.13 16 34 H 0.10 1.13 8.05 -2.39 -0.02 1.11 16 35 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -83.38 316.66 -1.81 -85.19 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.03 Total: 25.40 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 3.13 Total: -40.99 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -0.52 Total: -102.54 kcal Atomic # 8 Polarization: -101.46 SS G_CDS: -5.91 Total: -107.38 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.77 Total: 41.96 kcal Atomic # 16 Polarization: 98.64 SS G_CDS: -0.30 Total: 98.34 kcal Total: -83.38 -1.81 -85.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063155920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.671 kcal (2) G-P(sol) polarization free energy of solvation -83.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds