Wall clock time and date at job start Mon Mar 30 2020 02:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46374 * 2 1 4 4 C 1.53047 * 109.46074 * 240.03481 * 2 1 3 5 5 C 1.53189 * 109.31127 * 178.60196 * 4 2 1 6 6 N 1.46922 * 108.77024 * 54.65277 * 5 4 2 7 7 S 1.65599 * 120.63197 * 126.36058 * 6 5 4 8 8 O 1.42095 * 104.27787 * 26.09606 * 7 6 5 9 9 O 1.42103 * 104.27598 * 153.95411 * 7 6 5 10 10 C 1.81403 * 104.44899 * 270.02272 * 7 6 5 11 11 C 1.52996 * 109.46954 * 180.02562 * 10 7 6 12 12 C 1.50699 * 109.47048 * 179.97438 * 11 10 7 13 13 H 1.07997 * 120.00219 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00035 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00279 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99903 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46995 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47143 * 120.00488 * 16 14 12 19 19 H 1.48499 * 109.47070 * 240.00664 * 16 14 12 20 20 C 1.46932 * 118.73657 * 306.38266 * 6 5 4 21 21 C 1.53040 * 109.46295 * 119.97855 * 2 1 3 22 22 H 1.09002 * 109.49605 * 301.33581 * 21 2 1 23 23 O 1.42891 * 109.49961 * 61.43045 * 21 2 1 24 24 H 1.09002 * 109.47153 * 299.99534 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99707 * 1 2 3 27 27 H 1.09005 * 109.49182 * 298.56211 * 4 2 1 28 28 H 1.08995 * 109.50082 * 58.65718 * 4 2 1 29 29 H 1.08997 * 109.59884 * 294.86239 * 5 4 2 30 30 H 1.09009 * 109.70335 * 174.50090 * 5 4 2 31 31 H 1.09001 * 109.47027 * 299.99920 * 10 7 6 32 32 H 1.08996 * 109.47358 * 59.99845 * 10 7 6 33 33 H 1.09001 * 109.46828 * 299.99601 * 11 10 7 34 34 H 1.08996 * 109.47797 * 60.00042 * 11 10 7 35 35 H 0.96991 * 120.00283 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.58797 * 293.81924 * 20 6 5 37 37 H 1.09004 * 109.70006 * 173.46423 * 20 6 5 38 38 H 0.96702 * 113.99943 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5713 -0.6883 -1.2644 6 7 4.0679 -1.2488 -0.0003 7 16 5.1658 -2.4885 -0.0006 8 8 5.8514 -2.3491 -1.2374 9 8 5.8511 -2.3499 1.2366 10 6 4.1509 -3.9920 -0.0012 11 6 5.0611 -5.2217 -0.0008 12 6 4.2180 -6.4707 -0.0007 13 1 3.1407 -6.3951 -0.0004 14 6 4.8220 -7.7103 -0.0009 15 7 6.1338 -7.8025 -0.0007 16 14 3.7768 -9.2586 0.0000 17 1 2.3394 -8.8854 0.0003 18 1 4.0793 -10.0607 -1.2125 19 1 4.0807 -10.0602 1.2125 20 6 3.5714 -0.6887 1.2641 21 6 2.0399 -0.7210 1.2499 22 1 1.6573 -0.2211 2.1398 23 8 1.5915 -2.0776 1.2343 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.6978 -1.7557 -1.2383 28 1 1.6572 -0.2208 -2.1399 29 1 3.9143 0.3412 -1.3673 30 1 3.9438 -1.2826 -2.0989 31 1 3.5216 -4.0059 0.8887 32 1 3.5218 -4.0054 -0.8912 33 1 5.6906 -5.2080 -0.8906 34 1 5.6899 -5.2082 0.8894 35 1 6.5587 -8.6744 -0.0012 36 1 3.9143 0.3408 1.3674 37 1 3.9417 -1.2828 2.0996 38 1 1.8788 -2.5957 1.9986 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093052438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:39 Heat of formation + Delta-G solvation = -166.190921 kcal Electronic energy + Delta-G solvation = -20949.173095 eV Core-core repulsion = 17723.959031 eV Total energy + Delta-G solvation = -3225.214064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.21083 -38.25233 -37.05125 -36.34233 -35.87874 -34.44168 -33.11487 -31.20511 -28.45015 -27.56692 -24.21619 -23.96107 -23.26761 -20.94328 -19.93536 -19.19856 -18.40563 -17.66062 -17.14457 -16.99801 -16.53122 -15.93654 -15.83692 -15.47256 -15.04807 -14.73422 -14.51130 -14.47378 -13.95852 -13.71594 -13.32592 -13.23649 -13.19207 -13.00433 -12.94990 -12.78291 -12.55861 -12.42107 -12.25658 -12.12241 -11.89790 -11.69512 -11.53524 -11.34399 -11.08653 -10.79554 -10.65902 -9.76656 -8.26327 -6.40133 -0.69280 1.40317 1.40924 1.54511 1.73826 2.37782 2.85322 3.06967 3.15213 3.47055 3.62392 3.83984 4.01406 4.04011 4.10573 4.19313 4.25972 4.50832 4.63368 4.73589 4.75669 4.77249 4.80744 4.91538 4.95217 5.08535 5.21720 5.27194 5.28265 5.32039 5.44154 5.64018 5.68624 5.69471 6.06793 6.73668 6.94063 7.30081 8.86266 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021625 B = 0.005541 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.479241 B = 5052.158623 C = 5751.302967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 H 0.100 0.900 4 C -0.125 4.125 5 C 0.114 3.886 6 N -0.988 5.988 7 S 2.613 3.387 8 O -0.998 6.998 9 O -0.994 6.994 10 C -0.578 4.578 11 C 0.021 3.979 12 C -0.535 4.535 13 H 0.074 0.926 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.974 3.026 17 H -0.257 1.257 18 H -0.278 1.278 19 H -0.276 1.276 20 C 0.081 3.919 21 C 0.095 3.905 22 H 0.089 0.911 23 O -0.574 6.574 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.002 0.998 34 H 0.006 0.994 35 H 0.267 0.733 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 18.119 1.682 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 H 0.118 0.882 4 C -0.164 4.164 5 C -0.010 4.010 6 N -0.827 5.827 7 S 2.711 3.289 8 O -0.989 6.989 9 O -0.985 6.985 10 C -0.710 4.710 11 C -0.018 4.018 12 C -0.574 4.574 13 H 0.092 0.908 14 C -0.202 4.202 15 N -0.575 5.575 16 Si 0.797 3.203 17 H -0.181 1.181 18 H -0.204 1.204 19 H -0.202 1.202 20 C -0.044 4.044 21 C 0.035 3.965 22 H 0.107 0.893 23 O -0.381 6.381 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.020 0.980 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -11.749 18.353 1.122 21.821 hybrid contribution -0.124 -1.598 0.465 1.669 sum -11.873 16.755 1.587 20.596 Atomic orbital electron populations 1.21705 0.94137 1.01647 1.02084 1.21166 0.96576 0.99208 0.93070 0.88202 1.21918 0.93735 1.01858 0.98923 1.21629 0.95227 1.00359 0.83820 1.57448 1.62562 1.49852 1.12852 1.04716 0.75439 0.76108 0.72660 1.93478 1.72477 1.86190 1.46734 1.93480 1.72376 1.86195 1.46415 1.30317 1.13484 1.15291 1.11912 1.18822 0.94337 0.92515 0.96086 1.21518 0.93817 0.90802 1.51258 0.90815 1.26109 0.96317 1.03346 0.94384 1.70104 1.10576 1.25757 1.51062 0.85270 0.79100 0.78052 0.77857 1.18060 1.20387 1.20186 1.22441 0.95972 1.01506 0.84530 1.22328 0.91103 0.83652 0.99423 0.89340 1.86525 1.77884 1.23205 1.50524 0.91997 0.93598 0.91976 0.92181 0.89093 0.89283 0.90427 0.84043 0.85093 0.97968 0.97542 0.92388 0.88392 0.89301 0.76500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.06 71.98 0.65 -1.29 16 2 C -0.08 -1.21 2.51 -10.77 -0.03 -1.24 16 3 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.13 -2.27 5.22 30.67 0.16 -2.11 16 5 C 0.11 2.50 6.32 86.36 0.55 3.05 16 6 N -0.99 -25.66 3.16 -513.06 -1.62 -27.28 16 7 S 2.61 96.79 5.41 -56.49 -0.31 96.48 16 8 O -1.00 -43.29 16.72 -127.65 -2.13 -45.43 16 9 O -0.99 -41.68 16.73 -127.65 -2.14 -43.82 16 10 C -0.58 -22.72 6.12 71.98 0.44 -22.28 16 11 C 0.02 1.14 4.98 29.85 0.15 1.29 16 12 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 13 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 14 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 15 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 16 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 17 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 20 C 0.08 1.58 5.95 86.36 0.51 2.10 16 21 C 0.10 1.53 3.22 30.67 0.10 1.63 16 22 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 23 O -0.57 -11.48 11.90 -148.98 -1.77 -13.25 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.04 0.83 7.72 -2.39 -0.02 0.81 16 26 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.06 1.35 7.61 -2.38 -0.02 1.34 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.92 7.09 -2.38 -0.02 1.91 16 31 H 0.14 4.82 8.14 -2.39 -0.02 4.81 16 32 H 0.13 4.78 8.14 -2.39 -0.02 4.77 16 33 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.85 7.10 -2.39 -0.02 1.83 16 38 H 0.39 5.93 9.08 -74.06 -0.67 5.26 16 Total: -1.00 -76.81 320.25 -2.06 -78.87 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.37 Total: 14.31 kcal Atomic # 6 Polarization: -51.71 SS G_CDS: 3.23 Total: -48.48 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.34 Total: -84.50 kcal Atomic # 8 Polarization: -96.46 SS G_CDS: -6.04 Total: -102.50 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 96.79 SS G_CDS: -0.31 Total: 96.48 kcal Total: -76.81 -2.06 -78.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093052438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.323 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds