Wall clock time and date at job start Mon Mar 30 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.44384 * 2 1 4 4 C 1.53037 * 109.46000 * 119.96736 * 2 1 3 5 5 C 1.53196 * 109.31040 * 181.38842 * 4 2 1 6 6 N 1.46922 * 108.77606 * 305.36550 * 5 4 2 7 7 S 1.65602 * 120.62914 * 233.58926 * 6 5 4 8 8 O 1.42105 * 104.27580 * 206.06666 * 7 6 5 9 9 O 1.42094 * 104.27857 * 333.92754 * 7 6 5 10 10 C 1.81404 * 104.45085 * 89.99981 * 7 6 5 11 11 C 1.52995 * 109.46949 * 179.97438 * 10 7 6 12 12 C 1.50706 * 109.47017 * 179.97438 * 11 10 7 13 13 H 1.08002 * 119.99692 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00235 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00101 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99968 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46858 * 90.00047 * 16 14 12 18 18 H 1.48494 * 109.47488 * 209.99691 * 16 14 12 19 19 H 1.48497 * 109.47079 * 330.00230 * 16 14 12 20 20 C 1.46931 * 118.74046 * 53.60492 * 6 5 4 21 21 C 1.53039 * 109.45798 * 240.03786 * 2 1 3 22 22 H 1.08993 * 109.52527 * 298.57858 * 21 2 1 23 23 O 1.42900 * 109.50182 * 58.66452 * 21 2 1 24 24 H 1.09004 * 109.47498 * 300.03263 * 1 2 3 25 25 H 1.08996 * 109.47590 * 60.03524 * 1 2 3 26 26 H 1.09000 * 109.46833 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.50017 * 61.43249 * 4 2 1 28 28 H 1.09004 * 109.49998 * 301.33846 * 4 2 1 29 29 H 1.08999 * 109.58846 * 65.15273 * 5 4 2 30 30 H 1.09003 * 109.58174 * 185.43556 * 5 4 2 31 31 H 1.09001 * 109.46952 * 299.99795 * 10 7 6 32 32 H 1.09001 * 109.47303 * 59.99562 * 10 7 6 33 33 H 1.08994 * 109.47552 * 299.99816 * 11 10 7 34 34 H 1.08995 * 109.47197 * 60.00095 * 11 10 7 35 35 H 0.97005 * 120.00273 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.57916 * 66.17927 * 20 6 5 37 37 H 1.08997 * 109.58813 * 186.60528 * 20 6 5 38 38 H 0.96693 * 114.00056 * 179.84031 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2486 -0.0001 7 16 5.1667 -2.4876 -0.0001 8 8 5.8518 -2.3484 -1.2372 9 8 5.8522 -2.3482 1.2368 10 6 4.1528 -3.9919 0.0002 11 6 5.0639 -5.2209 -0.0005 12 6 4.2215 -6.4706 0.0004 13 1 3.1441 -6.3956 0.0017 14 6 4.8263 -7.7096 -0.0006 15 7 4.0912 -8.8001 0.0007 16 14 6.6898 -7.8394 -0.0036 17 1 7.1858 -7.8737 1.3958 18 1 7.0983 -9.0833 -0.7041 19 1 7.2666 -6.6642 -0.7045 20 6 3.5713 -0.6884 -1.2643 21 6 2.0398 -0.7207 -1.2501 22 1 1.6978 -1.7555 -1.2390 23 8 1.5382 -0.0651 -2.4166 24 1 -0.3634 0.5143 0.8897 25 1 -0.3634 0.5132 -0.8902 26 1 -0.3633 -1.0277 0.0005 27 1 1.6978 -1.7556 1.2383 28 1 1.6572 -0.2208 2.1399 29 1 3.9143 0.3410 1.3673 30 1 3.9416 -1.2824 2.0999 31 1 3.5237 -4.0059 0.8903 32 1 3.5234 -4.0060 -0.8897 33 1 5.6926 -5.2068 -0.8907 34 1 5.6934 -5.2070 0.8892 35 1 4.5167 -9.6719 -0.0003 36 1 3.9142 0.3411 -1.3673 37 1 3.9417 -1.2843 -2.0985 38 1 1.8241 -0.4680 -3.2478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093052440.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:41 Heat of formation + Delta-G solvation = -136.134789 kcal Electronic energy + Delta-G solvation = -20704.544396 eV Core-core repulsion = 17480.633664 eV Total energy + Delta-G solvation = -3223.910732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.39053 -36.87788 -36.04290 -35.62422 -33.99679 -33.66459 -31.51865 -30.23722 -27.68954 -26.01507 -23.40594 -22.93350 -21.31582 -20.22368 -18.75906 -17.85945 -17.29921 -16.93676 -16.21674 -15.64893 -15.12105 -14.92196 -14.61809 -14.31000 -13.88187 -13.69069 -13.37067 -13.14805 -12.83994 -12.59775 -12.37993 -11.98552 -11.94511 -11.80728 -11.74234 -11.60838 -11.29169 -11.24463 -11.16330 -10.77421 -10.56335 -10.46142 -10.37655 -10.14332 -9.72012 -9.43911 -8.89632 -8.69487 -6.19712 -4.21301 0.55728 2.79278 3.24053 3.31607 3.35464 3.94398 4.12114 4.32923 4.35048 4.52338 4.57340 4.68172 4.85683 5.04941 5.07737 5.11935 5.23295 5.40664 5.41078 5.47857 5.52780 5.57240 5.62000 5.72021 5.80733 5.85189 6.01814 6.15361 6.18640 6.24390 6.48017 6.77226 6.89734 7.43976 7.51158 8.33057 8.81032 9.39891 10.92631 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023675 B = 0.005213 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.416457 B = 5369.920179 C = 5763.586519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 H 0.077 0.923 4 C -0.133 4.133 5 C 0.119 3.881 6 N -1.001 6.001 7 S 2.587 3.413 8 O -0.963 6.963 9 O -0.961 6.961 10 C -0.582 4.582 11 C -0.007 4.007 12 C -0.520 4.520 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 C 0.092 3.908 21 C 0.093 3.907 22 H 0.064 0.936 23 O -0.563 6.563 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.032 0.968 34 H 0.028 0.972 35 H 0.267 0.733 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 18.100 -0.432 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.095 0.905 4 C -0.172 4.172 5 C -0.007 4.007 6 N -0.838 5.838 7 S 2.686 3.314 8 O -0.954 6.954 9 O -0.952 6.952 10 C -0.715 4.715 11 C -0.046 4.046 12 C -0.559 4.559 13 H 0.096 0.904 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.034 4.034 21 C 0.032 3.968 22 H 0.082 0.918 23 O -0.368 6.368 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.640 18.451 0.011 19.026 hybrid contribution 0.522 -0.928 -0.420 1.145 sum -4.118 17.523 -0.409 18.005 Atomic orbital electron populations 1.21751 0.94435 1.02001 1.01856 1.21041 0.96418 0.99874 0.92616 0.90497 1.22059 0.95455 1.01947 0.97707 1.21439 0.93796 1.00230 0.85195 1.57879 1.63310 1.51621 1.11034 1.05808 0.75446 0.75992 0.74176 1.93542 1.70927 1.85599 1.45298 1.93543 1.70843 1.85577 1.45226 1.30353 1.14095 1.16280 1.10793 1.19410 0.94937 0.92440 0.97833 1.20837 0.94679 0.88000 1.52386 0.90438 1.24979 0.98326 0.95646 0.94092 1.69878 1.35669 0.97840 1.49913 0.86930 0.86042 0.78349 0.79165 1.19631 1.20711 1.18649 1.22093 0.94515 1.00854 0.85940 1.22239 0.92154 0.96266 0.86103 0.91814 1.86492 1.75258 1.58977 1.16028 0.92824 0.91865 0.92716 0.90765 0.89977 0.91138 0.88649 0.85647 0.85815 0.94982 0.95390 0.92345 0.90554 0.88901 0.77258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.04 37.16 0.34 -0.93 16 2 C -0.08 -0.76 2.43 -90.58 -0.22 -0.98 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.13 -1.19 5.36 -26.61 -0.14 -1.33 16 5 C 0.12 1.26 6.31 -3.71 -0.02 1.24 16 6 N -1.00 -12.69 3.22 -113.52 -0.37 -13.05 16 7 S 2.59 43.31 5.41 -107.50 -0.58 42.72 16 8 O -0.96 -18.49 16.72 -57.54 -0.96 -19.45 16 9 O -0.96 -18.42 16.73 -57.54 -0.96 -19.38 16 10 C -0.58 -10.38 6.12 37.16 0.23 -10.16 16 11 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 12 C -0.52 -14.34 9.66 -34.44 -0.33 -14.68 16 13 H 0.08 2.24 7.99 -52.49 -0.42 1.83 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -26.83 13.96 55.43 0.77 -26.05 16 16 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 20 C 0.09 1.02 5.94 -3.71 -0.02 1.00 16 21 C 0.09 0.93 3.07 -26.61 -0.08 0.85 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 O -0.56 -5.35 12.59 -35.23 -0.44 -5.79 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.60 7.65 -51.93 -0.40 0.21 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.04 7.11 -51.93 -0.37 0.67 16 31 H 0.13 2.03 8.14 -51.92 -0.42 1.60 16 32 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 33 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 34 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.02 7.10 -51.93 -0.37 0.65 16 38 H 0.38 2.26 9.08 45.56 0.41 2.67 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -34.39 317.72 -8.20 -42.59 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.30 Total: 0.31 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -0.47 Total: -23.30 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.41 Total: -39.11 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -2.37 Total: -44.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 43.31 SS G_CDS: -0.58 Total: 42.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.39 -8.20 -42.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093052440.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.546 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds