Wall clock time and date at job start Mon Mar 30 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.44384 * 2 1 4 4 C 1.53037 * 109.46000 * 119.96736 * 2 1 3 5 5 C 1.53196 * 109.31040 * 181.38842 * 4 2 1 6 6 N 1.46922 * 108.77606 * 305.36550 * 5 4 2 7 7 S 1.65602 * 120.62914 * 233.58926 * 6 5 4 8 8 O 1.42105 * 104.27580 * 206.06666 * 7 6 5 9 9 O 1.42094 * 104.27857 * 333.92754 * 7 6 5 10 10 C 1.81404 * 104.45085 * 89.99981 * 7 6 5 11 11 C 1.52995 * 109.46949 * 179.97438 * 10 7 6 12 12 C 1.50706 * 109.47017 * 179.97438 * 11 10 7 13 13 H 1.08002 * 119.99692 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00235 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00101 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99968 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46858 * 90.00047 * 16 14 12 18 18 H 1.48494 * 109.47488 * 209.99691 * 16 14 12 19 19 H 1.48497 * 109.47079 * 330.00230 * 16 14 12 20 20 C 1.46931 * 118.74046 * 53.60492 * 6 5 4 21 21 C 1.53039 * 109.45798 * 240.03786 * 2 1 3 22 22 H 1.08993 * 109.52527 * 298.57858 * 21 2 1 23 23 O 1.42900 * 109.50182 * 58.66452 * 21 2 1 24 24 H 1.09004 * 109.47498 * 300.03263 * 1 2 3 25 25 H 1.08996 * 109.47590 * 60.03524 * 1 2 3 26 26 H 1.09000 * 109.46833 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.50017 * 61.43249 * 4 2 1 28 28 H 1.09004 * 109.49998 * 301.33846 * 4 2 1 29 29 H 1.08999 * 109.58846 * 65.15273 * 5 4 2 30 30 H 1.09003 * 109.58174 * 185.43556 * 5 4 2 31 31 H 1.09001 * 109.46952 * 299.99795 * 10 7 6 32 32 H 1.09001 * 109.47303 * 59.99562 * 10 7 6 33 33 H 1.08994 * 109.47552 * 299.99816 * 11 10 7 34 34 H 1.08995 * 109.47197 * 60.00095 * 11 10 7 35 35 H 0.97005 * 120.00273 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.57916 * 66.17927 * 20 6 5 37 37 H 1.08997 * 109.58813 * 186.60528 * 20 6 5 38 38 H 0.96693 * 114.00056 * 179.84031 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2486 -0.0001 7 16 5.1667 -2.4876 -0.0001 8 8 5.8518 -2.3484 -1.2372 9 8 5.8522 -2.3482 1.2368 10 6 4.1528 -3.9919 0.0002 11 6 5.0639 -5.2209 -0.0005 12 6 4.2215 -6.4706 0.0004 13 1 3.1441 -6.3956 0.0017 14 6 4.8263 -7.7096 -0.0006 15 7 4.0912 -8.8001 0.0007 16 14 6.6898 -7.8394 -0.0036 17 1 7.1858 -7.8737 1.3958 18 1 7.0983 -9.0833 -0.7041 19 1 7.2666 -6.6642 -0.7045 20 6 3.5713 -0.6884 -1.2643 21 6 2.0398 -0.7207 -1.2501 22 1 1.6978 -1.7555 -1.2390 23 8 1.5382 -0.0651 -2.4166 24 1 -0.3634 0.5143 0.8897 25 1 -0.3634 0.5132 -0.8902 26 1 -0.3633 -1.0277 0.0005 27 1 1.6978 -1.7556 1.2383 28 1 1.6572 -0.2208 2.1399 29 1 3.9143 0.3410 1.3673 30 1 3.9416 -1.2824 2.0999 31 1 3.5237 -4.0059 0.8903 32 1 3.5234 -4.0060 -0.8897 33 1 5.6926 -5.2068 -0.8907 34 1 5.6934 -5.2070 0.8892 35 1 4.5167 -9.6719 -0.0003 36 1 3.9142 0.3411 -1.3673 37 1 3.9417 -1.2843 -2.0985 38 1 1.8241 -0.4680 -3.2478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093052440.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:41 Heat of formation + Delta-G solvation = -163.485800 kcal Electronic energy + Delta-G solvation = -20705.730425 eV Core-core repulsion = 17480.633664 eV Total energy + Delta-G solvation = -3225.096761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.19676 -38.29665 -37.11164 -36.80732 -35.90817 -34.49863 -33.48402 -31.04400 -28.52392 -27.88787 -24.20543 -23.88898 -23.01013 -21.12298 -19.96379 -19.39473 -18.59666 -18.07250 -17.38676 -17.09922 -16.41660 -16.06254 -15.82664 -15.51021 -15.22308 -14.88573 -14.73334 -14.17881 -13.97127 -13.81859 -13.42015 -13.31340 -13.20245 -13.08956 -13.08609 -12.97834 -12.84307 -12.48511 -12.25984 -12.03428 -11.91403 -11.73187 -11.54495 -11.45700 -11.12934 -11.01752 -10.85321 -9.91359 -8.37425 -6.43337 -0.78877 1.31431 1.33446 1.43208 1.61578 2.28733 2.77021 2.96661 3.07609 3.26444 3.66730 3.76772 3.86586 3.92931 3.99716 4.09335 4.29126 4.32441 4.46621 4.54874 4.67871 4.70969 4.81779 4.89561 4.93674 5.03811 5.05366 5.10351 5.15049 5.22964 5.44288 5.46239 5.48945 5.56082 6.15656 6.62731 6.86387 7.21329 8.78114 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023675 B = 0.005213 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.416457 B = 5369.920179 C = 5763.586519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 H 0.080 0.920 4 C -0.128 4.128 5 C 0.109 3.891 6 N -0.992 5.992 7 S 2.615 3.385 8 O -0.987 6.987 9 O -0.984 6.984 10 C -0.588 4.588 11 C -0.017 4.017 12 C -0.527 4.527 13 H 0.049 0.951 14 C 0.015 3.985 15 N -0.940 5.940 16 Si 0.924 3.076 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.250 1.250 20 C 0.088 3.912 21 C 0.095 3.905 22 H 0.060 0.940 23 O -0.571 6.571 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.031 0.969 34 H 0.031 0.969 35 H 0.270 0.730 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 19.935 -0.202 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.099 0.901 4 C -0.167 4.167 5 C -0.015 4.015 6 N -0.832 5.832 7 S 2.713 3.287 8 O -0.978 6.978 9 O -0.975 6.975 10 C -0.719 4.719 11 C -0.056 4.056 12 C -0.566 4.566 13 H 0.067 0.933 14 C -0.184 4.184 15 N -0.580 5.580 16 Si 0.747 3.253 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.173 1.173 20 C -0.038 4.038 21 C 0.035 3.965 22 H 0.078 0.922 23 O -0.378 6.378 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.315 20.278 0.230 20.734 hybrid contribution 0.300 -1.412 -0.514 1.532 sum -4.015 18.866 -0.283 19.291 Atomic orbital electron populations 1.21710 0.94083 1.01759 1.02124 1.21077 0.96684 0.99965 0.92348 0.90137 1.22058 0.94102 1.02013 0.98567 1.21724 0.94973 1.00907 0.83886 1.57561 1.62935 1.50020 1.12677 1.04743 0.75249 0.75769 0.72987 1.93506 1.71969 1.85955 1.46345 1.93509 1.71834 1.85924 1.46204 1.30353 1.13962 1.15269 1.12296 1.19368 0.95408 0.92989 0.97804 1.21164 0.94065 0.90004 1.51371 0.93262 1.25855 1.03173 0.95400 0.93950 1.70005 1.37767 0.98531 1.51648 0.86039 0.80396 0.78985 0.79914 1.18487 1.19906 1.17346 1.22284 0.95331 1.01187 0.84957 1.22189 0.91264 0.96288 0.86783 0.92240 1.86472 1.75286 1.59288 1.16716 0.91488 0.92680 0.93197 0.91235 0.87687 0.89397 0.88934 0.84258 0.84479 0.95033 0.95105 0.92107 0.89497 0.89006 0.75594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.04 71.98 0.65 -1.52 16 2 C -0.08 -1.33 2.43 -10.77 -0.03 -1.36 16 3 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 4 C -0.13 -1.96 5.36 30.67 0.16 -1.80 16 5 C 0.11 2.06 6.31 86.36 0.54 2.60 16 6 N -0.99 -23.15 3.22 -513.06 -1.65 -24.80 16 7 S 2.62 83.84 5.41 -56.49 -0.31 83.54 16 8 O -0.99 -36.61 16.72 -127.65 -2.13 -38.75 16 9 O -0.98 -36.29 16.73 -127.65 -2.14 -38.43 16 10 C -0.59 -20.44 6.12 71.98 0.44 -20.00 16 11 C -0.02 -0.77 4.05 29.85 0.12 -0.65 16 12 C -0.53 -29.44 9.66 25.60 0.25 -29.19 16 13 H 0.05 2.94 7.99 -2.91 -0.02 2.91 16 14 C 0.01 0.85 5.47 84.65 0.46 1.32 16 15 N -0.94 -57.37 13.96 21.44 0.30 -57.07 16 16 Si 0.92 43.44 27.47 68.60 1.88 45.32 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 20 C 0.09 1.76 5.94 86.36 0.51 2.27 16 21 C 0.10 1.72 3.07 30.67 0.09 1.81 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 O -0.57 -9.74 12.59 -148.98 -1.88 -11.62 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.95 7.65 -2.39 -0.02 0.93 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.82 7.11 -2.39 -0.02 1.81 16 31 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 32 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 33 H 0.03 1.45 7.20 -2.39 -0.02 1.43 16 34 H 0.03 1.39 7.57 -2.39 -0.02 1.38 16 35 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.86 7.10 -2.39 -0.02 1.84 16 38 H 0.39 3.98 9.08 -74.06 -0.67 3.31 16 Total: -1.00 -73.13 317.72 -2.39 -75.53 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.32 Total: 12.80 kcal Atomic # 6 Polarization: -49.73 SS G_CDS: 3.21 Total: -46.52 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -1.35 Total: -81.87 kcal Atomic # 8 Polarization: -82.64 SS G_CDS: -6.15 Total: -88.79 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Atomic # 16 Polarization: 83.84 SS G_CDS: -0.31 Total: 83.54 kcal Total: -73.13 -2.39 -75.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093052440.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.960 kcal (2) G-P(sol) polarization free energy of solvation -73.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds