Wall clock time and date at job start Mon Mar 30 2020 01:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47021 * 2 1 4 4 N 1.46494 * 109.47489 * 120.00470 * 2 1 3 5 5 C 1.34781 * 119.99667 * 299.99969 * 4 2 1 6 6 O 1.21542 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.47886 * 119.99598 * 180.02562 * 5 4 2 8 8 C 1.39915 * 120.03143 * 359.97438 * 7 5 4 9 9 C 1.38325 * 120.36223 * 180.02562 * 8 7 5 10 10 C 1.37745 * 120.41285 * 0.02562 * 9 8 7 11 11 C 1.40745 * 120.04067 * 359.97438 * 10 9 8 12 12 C 1.41439 * 120.18018 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99853 * 24.38666 * 12 11 10 14 14 C 1.39937 * 120.00015 * 204.38540 * 12 11 10 15 15 N 1.30828 * 120.00202 * 17.84583 * 14 12 11 16 16 Si 1.86804 * 120.00094 * 197.84043 * 14 12 11 17 17 H 1.48505 * 109.46643 * 60.00420 * 16 14 12 18 18 H 1.48494 * 109.47065 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47088 * 300.00333 * 16 14 12 20 20 C 1.38995 * 120.02525 * 180.02562 * 7 5 4 21 21 C 1.50707 * 109.47289 * 240.00625 * 2 1 3 22 22 O 1.20823 * 119.99458 * 24.99679 * 21 2 1 23 23 O 1.34224 * 119.99909 * 204.99918 * 21 2 1 24 24 H 1.08998 * 109.47011 * 299.99538 * 1 2 3 25 25 H 1.09004 * 109.47142 * 59.99918 * 1 2 3 26 26 H 1.09007 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47388 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47128 * 300.00737 * 3 2 1 29 29 H 1.09010 * 109.46427 * 60.00247 * 3 2 1 30 30 H 0.96999 * 120.00641 * 120.00402 * 4 2 1 31 31 H 1.08009 * 119.81570 * 359.97438 * 8 7 5 32 32 H 1.08010 * 119.79275 * 180.02562 * 9 8 7 33 33 H 1.08002 * 119.98213 * 179.97438 * 10 9 8 34 34 H 0.96991 * 120.00411 * 180.02562 * 15 14 12 35 35 H 1.08005 * 120.20307 * 359.70165 * 20 7 5 36 36 H 0.96701 * 116.99846 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6928 -0.2302 2.4202 6 8 0.9944 0.7582 2.5319 7 6 2.1863 -0.9271 3.6276 8 6 2.9908 -2.0647 3.4998 9 6 3.4557 -2.7222 4.6245 10 6 3.1320 -2.2653 5.8830 11 6 2.3239 -1.1226 6.0315 12 6 1.9901 -0.6506 7.3223 13 1 2.6269 -0.8822 8.1633 14 6 0.8348 0.1165 7.5098 15 7 -0.1081 0.1114 6.6028 16 14 0.6388 1.1477 9.0550 17 1 1.7432 2.1375 9.1329 18 1 -0.6632 1.8604 9.0126 19 1 0.6806 0.2645 10.2481 20 6 1.8505 -0.4532 4.8903 21 6 2.0324 -0.7103 -1.2306 22 8 1.3396 -0.7701 -2.2187 23 8 3.2494 -1.2765 -1.2288 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 2.5761 -1.4793 1.1070 31 1 3.2495 -2.4320 2.5176 32 1 4.0765 -3.5993 4.5152 33 1 3.4985 -2.7843 6.7564 34 1 -0.9086 0.6434 6.7325 35 1 1.2331 0.4269 4.9938 36 1 3.5279 -1.7211 -2.0412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095969796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:41 Heat of formation + Delta-G solvation = -113.096704 kcal Electronic energy + Delta-G solvation = -21324.118250 eV Core-core repulsion = 17965.762573 eV Total energy + Delta-G solvation = -3358.355677 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89001 -39.27796 -37.23636 -36.41602 -35.29662 -33.79559 -31.72282 -29.67804 -29.38512 -27.30623 -25.40699 -24.99619 -22.73084 -21.03719 -20.28431 -19.34692 -18.41066 -17.98644 -17.10187 -15.98340 -15.67281 -15.28100 -14.84867 -14.53116 -14.39614 -13.90431 -13.70262 -13.19733 -13.09189 -12.82763 -12.55615 -12.24677 -12.03099 -11.94122 -11.72555 -11.65610 -11.34880 -11.15783 -11.07621 -10.76895 -10.72066 -10.52492 -10.01823 -9.72737 -9.23390 -8.98469 -8.88035 -7.67484 -7.55325 -6.82969 -4.44186 1.90584 2.14822 2.74973 2.79611 3.06123 3.07564 3.14706 3.43689 3.77953 3.89814 4.58869 4.67606 4.89722 5.12642 5.48916 5.57500 5.64832 5.75216 5.83846 5.88877 6.05344 6.16916 6.25312 6.28833 6.38208 6.66469 6.68548 6.95186 6.97937 7.18112 7.34654 7.64387 7.66084 7.71439 7.88337 8.01169 8.14871 8.46927 8.76628 8.79636 8.84169 10.11703 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026264 B = 0.004647 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.838782 B = 6023.532588 C = 6798.675268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.194 3.806 3 C -0.164 4.164 4 N -0.729 5.729 5 C 0.572 3.428 6 O -0.538 6.538 7 C -0.128 4.128 8 C -0.218 4.218 9 C -0.097 4.097 10 C -0.211 4.211 11 C 0.098 3.902 12 C -0.460 4.460 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.783 5.783 16 Si 0.910 3.090 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.265 1.265 20 C -0.091 4.091 21 C 0.485 3.515 22 O -0.506 6.506 23 O -0.510 6.510 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.406 0.594 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.285 0.715 35 H 0.135 0.865 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 -0.649 -10.515 11.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.106 3.894 3 C -0.222 4.222 4 N -0.386 5.386 5 C 0.364 3.636 6 O -0.416 6.416 7 C -0.132 4.132 8 C -0.238 4.238 9 C -0.115 4.115 10 C -0.231 4.231 11 C 0.096 3.904 12 C -0.489 4.489 13 H 0.099 0.901 14 C -0.145 4.145 15 N -0.407 5.407 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.190 1.190 20 C -0.111 4.111 21 C 0.326 3.674 22 O -0.393 6.393 23 O -0.322 6.322 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.244 0.756 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 2.764 0.338 -10.419 10.784 hybrid contribution 0.342 -0.427 -0.072 0.552 sum 3.105 -0.089 -10.491 10.941 Atomic orbital electron populations 1.22198 0.90882 1.03531 1.04824 1.20125 0.95941 0.92998 0.80310 1.22271 1.01829 0.93071 1.05024 1.46034 1.55466 1.32869 1.04227 1.18808 0.78680 0.83352 0.82764 1.90634 1.37915 1.26382 1.86667 1.19410 1.03213 0.98321 0.92227 1.20356 1.06853 0.99976 0.96610 1.20434 0.99596 0.98467 0.93031 1.21107 1.07654 0.98904 0.95454 1.17591 0.90004 0.89590 0.93221 1.19566 1.06619 1.28160 0.94538 0.90095 1.25957 0.94876 0.95399 0.98289 1.69774 1.05370 1.31620 1.33973 0.86326 0.78449 0.80299 0.81472 1.18698 1.20209 1.18965 1.21637 0.99917 1.00134 0.89381 1.23597 0.78656 0.75288 0.89881 1.90721 1.57143 1.56071 1.35340 1.84566 1.34781 1.67040 1.45764 0.88282 0.90844 0.92075 0.91600 0.91380 0.87966 0.75642 0.89182 0.88873 0.88605 0.90350 0.84734 0.73074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 7.93 37.16 0.29 -2.01 16 2 C 0.19 2.79 1.01 -132.97 -0.13 2.66 16 3 C -0.16 -2.23 8.38 37.16 0.31 -1.92 16 4 N -0.73 -11.75 4.99 -49.60 -0.25 -12.00 16 5 C 0.57 11.72 7.19 -12.31 -0.09 11.64 16 6 O -0.54 -12.13 12.54 5.33 0.07 -12.06 16 7 C -0.13 -2.92 5.87 -105.04 -0.62 -3.54 16 8 C -0.22 -4.46 9.55 -38.92 -0.37 -4.83 16 9 C -0.10 -2.02 10.01 -39.73 -0.40 -2.42 16 10 C -0.21 -4.91 9.78 -38.82 -0.38 -5.29 16 11 C 0.10 2.54 5.57 -106.87 -0.60 1.95 16 12 C -0.46 -11.84 9.05 -37.73 -0.34 -12.18 16 13 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 14 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 15 N -0.78 -20.25 10.95 55.55 0.61 -19.64 16 16 Si 0.91 18.41 29.60 -169.99 -5.03 13.38 16 17 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 C -0.09 -2.34 8.23 -38.44 -0.32 -2.65 16 21 C 0.48 6.20 7.11 36.01 0.26 6.46 16 22 O -0.51 -7.42 16.85 -18.75 -0.32 -7.73 16 23 O -0.51 -4.99 12.63 -39.24 -0.50 -5.49 16 24 H 0.10 1.67 6.17 -51.93 -0.32 1.35 16 25 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 26 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.62 6.16 -51.92 -0.32 1.30 16 30 H 0.41 5.93 5.93 -40.82 -0.24 5.69 16 31 H 0.09 1.53 6.38 -52.48 -0.33 1.20 16 32 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 35 H 0.14 3.73 5.74 -52.48 -0.30 3.43 16 36 H 0.41 2.05 9.10 45.56 0.41 2.46 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -29.55 307.81 -6.42 -35.97 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -3.18 Total: 13.32 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.47 Total: -10.39 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.36 Total: -31.64 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.74 Total: -25.28 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.55 -6.42 -35.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095969796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.125 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds