Wall clock time and date at job start Mon Mar 30 2020 01:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 H 1.09000 * 109.67757 * 307.15589 * 3 2 1 5 5 C 1.53303 * 109.67996 * 67.70887 * 3 2 1 6 6 O 1.42960 * 109.22014 * 172.02721 * 5 3 2 7 7 C 1.42963 * 114.16817 * 297.41776 * 6 5 3 8 8 C 1.52881 * 109.29859 * 62.45171 * 7 6 5 9 9 N 1.47153 * 109.68386 * 186.63768 * 3 2 1 10 10 S 1.65599 * 120.98138 * 9.71492 * 9 3 2 11 11 O 1.42098 * 104.27701 * 194.05136 * 10 9 3 12 12 O 1.42095 * 104.27935 * 321.91367 * 10 9 3 13 13 C 1.81406 * 104.44602 * 77.98193 * 10 9 3 14 14 C 1.52999 * 109.46937 * 185.05292 * 13 10 9 15 15 C 1.50698 * 109.47159 * 179.97438 * 14 13 10 16 16 H 1.08008 * 119.99807 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00230 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99720 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00008 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46938 * 89.99591 * 19 17 15 21 21 H 1.48496 * 109.47285 * 210.00018 * 19 17 15 22 22 H 1.48502 * 109.47214 * 330.00369 * 19 17 15 23 23 H 1.09004 * 109.47007 * 54.33902 * 1 2 3 24 24 H 1.09005 * 109.47110 * 174.33229 * 1 2 3 25 25 H 1.09001 * 109.47384 * 294.33495 * 1 2 3 26 26 H 1.09003 * 109.47350 * 240.00212 * 2 1 3 27 27 H 1.09000 * 109.47124 * 119.99814 * 2 1 3 28 28 H 1.08991 * 109.51000 * 291.95096 * 5 3 2 29 29 H 1.08999 * 109.51159 * 52.10604 * 5 3 2 30 30 H 1.08992 * 109.51506 * 182.50837 * 7 6 5 31 31 H 1.09000 * 109.51442 * 302.66343 * 7 6 5 32 32 H 1.08995 * 109.62330 * 188.11742 * 8 7 6 33 33 H 1.09000 * 109.52497 * 67.69476 * 8 7 6 34 34 H 1.08996 * 109.46939 * 305.05821 * 13 10 9 35 35 H 1.09005 * 109.47152 * 65.05818 * 13 10 9 36 36 H 1.08996 * 109.47737 * 300.00040 * 14 13 10 37 37 H 1.09005 * 109.46771 * 60.00292 * 14 13 10 38 38 H 0.97001 * 119.99414 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5778 1.9952 -0.8180 5 6 1.6958 2.1118 1.3356 6 8 2.3341 3.3893 1.4001 7 6 3.7622 3.3325 1.3667 8 6 4.2128 2.7246 0.0383 9 7 3.5027 1.4511 -0.1602 10 16 4.3261 0.0669 -0.5454 11 8 5.6865 0.3844 -0.2848 12 8 3.6588 -0.9528 0.1853 13 6 4.0513 -0.1424 -2.3262 14 6 4.6638 -1.4674 -2.7845 15 6 4.4349 -1.6417 -4.2638 16 1 3.9058 -0.8829 -4.8214 17 6 4.9009 -2.7696 -4.9054 18 7 4.7015 -2.9213 -6.1964 19 14 5.8153 -4.0822 -3.9408 20 1 4.8460 -5.0803 -3.4217 21 1 6.7938 -4.7583 -4.8299 22 1 6.5328 -3.4513 -2.8040 23 1 -0.3633 0.5991 -0.8350 24 1 -0.3633 -1.0227 -0.1015 25 1 -0.3634 0.4235 0.9363 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 0.6161 2.2400 1.4110 29 1 2.0473 1.4873 2.1569 30 1 4.1691 4.3389 1.4646 31 1 4.1212 2.7124 2.1882 32 1 5.2876 2.5454 0.0636 33 1 3.9732 3.4091 -0.7754 34 1 2.9806 -0.1470 -2.5305 35 1 4.5205 0.6805 -2.8655 36 1 5.7344 -1.4628 -2.5802 37 1 4.1945 -2.2903 -2.2452 38 1 5.0290 -3.7151 -6.6477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115594398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:33 Heat of formation + Delta-G solvation = -112.858112 kcal Electronic energy + Delta-G solvation = -21052.785978 eV Core-core repulsion = 17829.884598 eV Total energy + Delta-G solvation = -3222.901380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62388 -37.17601 -35.81370 -35.35536 -34.02117 -33.54018 -31.51914 -29.89006 -26.97381 -25.93925 -24.98409 -22.04091 -21.62380 -20.93160 -18.73365 -17.52719 -16.98524 -16.79945 -16.03104 -15.81057 -15.24011 -15.14259 -14.92045 -14.54215 -14.21628 -13.70082 -13.53200 -13.23396 -12.83594 -12.75285 -12.31312 -11.94169 -11.87402 -11.81987 -11.52728 -11.38261 -11.30071 -11.25278 -11.14539 -10.61396 -10.56460 -10.43631 -10.17350 -10.03389 -9.71256 -9.42612 -8.77716 -8.69107 -6.19289 -4.20750 0.56083 2.77126 3.23892 3.31406 3.35121 3.65373 4.09362 4.33007 4.39018 4.41803 4.60525 4.87550 4.92952 4.99989 5.11747 5.17515 5.23795 5.30015 5.34445 5.44036 5.48039 5.54174 5.61974 5.65774 5.77552 5.99953 6.05403 6.07869 6.24510 6.42969 6.53739 6.78406 6.89661 6.94051 7.51534 8.33805 8.81832 9.40226 10.93129 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027108 B = 0.005484 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.646071 B = 5104.433862 C = 5475.174594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.155 4.155 3 C 0.122 3.878 4 H 0.083 0.917 5 C 0.056 3.944 6 O -0.381 6.381 7 C 0.051 3.949 8 C 0.081 3.919 9 N -1.006 6.006 10 S 2.586 3.414 11 O -0.967 6.967 12 O -0.958 6.958 13 C -0.582 4.582 14 C -0.006 4.006 15 C -0.520 4.520 16 H 0.078 0.922 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.869 3.131 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.263 1.263 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 11.139 14.499 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.015 3.985 4 H 0.101 0.899 5 C -0.022 4.022 6 O -0.299 6.299 7 C -0.027 4.027 8 C -0.044 4.044 9 N -0.843 5.843 10 S 2.686 3.314 11 O -0.958 6.958 12 O -0.948 6.948 13 C -0.715 4.715 14 C -0.045 4.045 15 C -0.559 4.559 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.695 3.305 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.187 1.187 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.490 10.683 14.999 19.215 hybrid contribution 0.359 -0.724 -0.432 0.917 sum -5.131 9.959 14.567 18.376 Atomic orbital electron populations 1.21784 0.94772 1.02570 1.01632 1.22444 0.96913 0.93706 1.06241 1.21783 0.79517 0.98149 0.99011 0.89903 1.23020 0.98260 0.84954 0.95986 1.87924 1.18843 1.28614 1.94517 1.22843 0.81621 1.01916 0.96359 1.22052 0.98474 0.85292 0.98630 1.58059 1.15457 1.24689 1.86097 1.05819 0.73355 0.73011 0.79199 1.93507 1.33998 1.83100 1.85188 1.93601 1.74178 1.57243 1.69780 1.30370 1.10890 1.09468 1.20797 1.19405 0.96071 0.88970 1.00054 1.20843 1.38046 1.06789 0.90219 0.90416 1.24980 0.95329 0.97904 0.94833 1.69881 1.46098 1.28579 1.08720 0.86926 0.80550 0.82383 0.80595 1.19620 1.20702 1.18709 0.92505 0.91773 0.92638 0.90767 0.87395 0.87783 0.92410 0.87732 0.92696 0.87463 0.90647 0.85651 0.85622 0.95188 0.95224 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.60 37.15 0.36 -1.12 16 2 C -0.15 -1.95 3.77 -26.73 -0.10 -2.05 16 3 C 0.12 1.43 3.15 -67.42 -0.21 1.22 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 5 C 0.06 0.59 5.90 37.31 0.22 0.81 16 6 O -0.38 -4.38 10.74 -35.23 -0.38 -4.76 16 7 C 0.05 0.52 6.97 37.10 0.26 0.78 16 8 C 0.08 0.92 6.67 -3.75 -0.02 0.90 16 9 N -1.01 -13.49 3.27 -106.26 -0.35 -13.84 16 10 S 2.59 43.97 4.87 -107.50 -0.52 43.45 16 11 O -0.97 -18.69 16.35 -57.54 -0.94 -19.63 16 12 O -0.96 -17.69 13.49 -57.54 -0.78 -18.47 16 13 C -0.58 -10.72 5.85 37.16 0.22 -10.50 16 14 C -0.01 -0.13 4.05 -27.88 -0.11 -0.25 16 15 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 16 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 19 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.44 7.14 -51.93 -0.37 0.07 16 26 H 0.07 1.05 5.15 -51.93 -0.27 0.78 16 27 H 0.11 1.51 6.43 -51.93 -0.33 1.17 16 28 H 0.10 0.87 7.21 -51.93 -0.37 0.49 16 29 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.11 1.25 6.65 -51.93 -0.35 0.90 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.13 2.10 6.95 -51.93 -0.36 1.74 16 35 H 0.13 2.15 8.14 -51.92 -0.42 1.73 16 36 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 37 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -33.30 307.68 -7.84 -41.14 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.79 Total: -0.03 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 0.17 Total: -23.04 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.43 Total: -40.02 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -2.10 Total: -42.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 43.97 SS G_CDS: -0.52 Total: 43.45 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.30 -7.84 -41.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115594398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.719 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds