Wall clock time and date at job start Mon Mar 30 2020 01:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 H 1.09000 * 109.67757 * 307.15589 * 3 2 1 5 5 C 1.53303 * 109.67996 * 67.70887 * 3 2 1 6 6 O 1.42960 * 109.22014 * 172.02721 * 5 3 2 7 7 C 1.42963 * 114.16817 * 297.41776 * 6 5 3 8 8 C 1.52881 * 109.29859 * 62.45171 * 7 6 5 9 9 N 1.47153 * 109.68386 * 186.63768 * 3 2 1 10 10 S 1.65599 * 120.98138 * 9.71492 * 9 3 2 11 11 O 1.42098 * 104.27701 * 194.05136 * 10 9 3 12 12 O 1.42095 * 104.27935 * 321.91367 * 10 9 3 13 13 C 1.81406 * 104.44602 * 77.98193 * 10 9 3 14 14 C 1.52999 * 109.46937 * 185.05292 * 13 10 9 15 15 C 1.50698 * 109.47159 * 179.97438 * 14 13 10 16 16 H 1.08008 * 119.99807 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00230 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99720 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00008 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46938 * 89.99591 * 19 17 15 21 21 H 1.48496 * 109.47285 * 210.00018 * 19 17 15 22 22 H 1.48502 * 109.47214 * 330.00369 * 19 17 15 23 23 H 1.09004 * 109.47007 * 54.33902 * 1 2 3 24 24 H 1.09005 * 109.47110 * 174.33229 * 1 2 3 25 25 H 1.09001 * 109.47384 * 294.33495 * 1 2 3 26 26 H 1.09003 * 109.47350 * 240.00212 * 2 1 3 27 27 H 1.09000 * 109.47124 * 119.99814 * 2 1 3 28 28 H 1.08991 * 109.51000 * 291.95096 * 5 3 2 29 29 H 1.08999 * 109.51159 * 52.10604 * 5 3 2 30 30 H 1.08992 * 109.51506 * 182.50837 * 7 6 5 31 31 H 1.09000 * 109.51442 * 302.66343 * 7 6 5 32 32 H 1.08995 * 109.62330 * 188.11742 * 8 7 6 33 33 H 1.09000 * 109.52497 * 67.69476 * 8 7 6 34 34 H 1.08996 * 109.46939 * 305.05821 * 13 10 9 35 35 H 1.09005 * 109.47152 * 65.05818 * 13 10 9 36 36 H 1.08996 * 109.47737 * 300.00040 * 14 13 10 37 37 H 1.09005 * 109.46771 * 60.00292 * 14 13 10 38 38 H 0.97001 * 119.99414 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5778 1.9952 -0.8180 5 6 1.6958 2.1118 1.3356 6 8 2.3341 3.3893 1.4001 7 6 3.7622 3.3325 1.3667 8 6 4.2128 2.7246 0.0383 9 7 3.5027 1.4511 -0.1602 10 16 4.3261 0.0669 -0.5454 11 8 5.6865 0.3844 -0.2848 12 8 3.6588 -0.9528 0.1853 13 6 4.0513 -0.1424 -2.3262 14 6 4.6638 -1.4674 -2.7845 15 6 4.4349 -1.6417 -4.2638 16 1 3.9058 -0.8829 -4.8214 17 6 4.9009 -2.7696 -4.9054 18 7 4.7015 -2.9213 -6.1964 19 14 5.8153 -4.0822 -3.9408 20 1 4.8460 -5.0803 -3.4217 21 1 6.7938 -4.7583 -4.8299 22 1 6.5328 -3.4513 -2.8040 23 1 -0.3633 0.5991 -0.8350 24 1 -0.3633 -1.0227 -0.1015 25 1 -0.3634 0.4235 0.9363 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 0.6161 2.2400 1.4110 29 1 2.0473 1.4873 2.1569 30 1 4.1691 4.3389 1.4646 31 1 4.1212 2.7124 2.1882 32 1 5.2876 2.5454 0.0636 33 1 3.9732 3.4091 -0.7754 34 1 2.9806 -0.1470 -2.5305 35 1 4.5205 0.6805 -2.8655 36 1 5.7344 -1.4628 -2.5802 37 1 4.1945 -2.2903 -2.2452 38 1 5.0290 -3.7151 -6.6477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115594398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:32 Heat of formation + Delta-G solvation = -137.730453 kcal Electronic energy + Delta-G solvation = -21053.864523 eV Core-core repulsion = 17829.884598 eV Total energy + Delta-G solvation = -3223.979925 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51582 -38.53393 -37.15852 -36.41988 -35.94214 -34.51553 -33.50560 -30.73024 -28.16299 -27.57663 -25.85280 -23.24893 -22.92458 -22.18992 -20.04182 -19.27855 -18.30450 -17.88165 -17.21297 -17.03064 -16.47740 -16.35946 -16.13104 -15.83586 -15.43597 -15.24314 -14.84462 -14.46506 -14.14351 -13.84044 -13.77253 -13.28042 -13.20747 -13.11162 -13.06763 -12.99776 -12.39169 -12.29758 -12.20667 -12.11387 -12.01035 -11.76868 -11.60810 -11.41227 -11.17173 -11.02833 -10.86923 -9.79886 -8.39093 -6.45238 -0.80685 1.29952 1.31648 1.41649 1.56732 2.27156 2.71926 2.87635 2.94709 3.11257 3.42234 3.70113 3.86253 3.91535 4.04562 4.11842 4.17841 4.34435 4.44650 4.45385 4.51837 4.59495 4.67867 4.77556 4.84286 4.95799 5.01888 5.03542 5.10358 5.20422 5.30041 5.43657 5.45538 5.58812 6.13671 6.14022 6.60572 7.19284 8.76626 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027108 B = 0.005484 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.646071 B = 5104.433862 C = 5475.174594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 C 0.118 3.882 4 H 0.098 0.902 5 C 0.056 3.944 6 O -0.388 6.388 7 C 0.050 3.950 8 C 0.072 3.928 9 N -1.000 6.000 10 S 2.612 3.388 11 O -0.990 6.990 12 O -0.973 6.973 13 C -0.590 4.590 14 C -0.013 4.013 15 C -0.529 4.529 16 H 0.048 0.952 17 C 0.015 3.985 18 N -0.939 5.939 19 Si 0.925 3.075 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.251 1.251 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.054 0.946 30 H 0.134 0.866 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.029 0.971 37 H 0.033 0.967 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 12.121 16.373 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.198 4.198 3 C 0.013 3.987 4 H 0.116 0.884 5 C -0.022 4.022 6 O -0.306 6.306 7 C -0.028 4.028 8 C -0.053 4.053 9 N -0.840 5.840 10 S 2.711 3.289 11 O -0.981 6.981 12 O -0.963 6.963 13 C -0.721 4.721 14 C -0.052 4.052 15 C -0.568 4.568 16 H 0.066 0.934 17 C -0.184 4.184 18 N -0.579 5.579 19 Si 0.748 3.252 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.175 1.175 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.148 0.852 29 H 0.072 0.928 30 H 0.151 0.849 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.003 11.663 16.861 21.362 hybrid contribution 0.452 -0.918 -1.017 1.443 sum -5.551 10.745 15.844 19.932 Atomic orbital electron populations 1.21783 0.92566 1.02813 1.03325 1.22419 0.98968 0.93938 1.04438 1.22011 0.78182 0.97916 1.00625 0.88367 1.23124 0.99743 0.84559 0.94747 1.87924 1.19400 1.28917 1.94383 1.22992 0.81185 1.03421 0.95215 1.22341 0.98198 0.84423 1.00316 1.57806 1.16385 1.24439 1.85359 1.04846 0.72764 0.73449 0.77864 1.93472 1.35776 1.83747 1.85081 1.93595 1.74362 1.58823 1.69525 1.30391 1.11410 1.07027 1.23268 1.19341 0.96463 0.92028 0.97415 1.21158 1.37152 1.05973 0.92494 0.93418 1.25866 0.96370 1.00384 0.95743 1.70008 1.47738 1.29678 1.10461 0.86025 0.79764 0.79799 0.79656 1.18338 1.19771 1.17458 0.91453 0.92232 0.90413 0.92824 0.88972 0.85205 0.92757 0.84857 0.92983 0.87884 0.88844 0.84451 0.84797 0.95319 0.94828 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.60 71.98 0.69 -1.88 16 2 C -0.16 -3.80 3.77 30.59 0.12 -3.68 16 3 C 0.12 2.52 3.15 44.97 0.14 2.66 16 4 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.06 1.02 5.90 72.08 0.43 1.45 16 6 O -0.39 -7.68 10.74 -148.98 -1.60 -9.28 16 7 C 0.05 0.87 6.97 71.94 0.50 1.37 16 8 C 0.07 1.48 6.67 86.21 0.58 2.05 16 9 N -1.00 -25.09 3.27 -490.09 -1.60 -26.70 16 10 S 2.61 86.67 4.87 -56.49 -0.28 86.39 16 11 O -0.99 -37.44 16.35 -127.65 -2.09 -39.53 16 12 O -0.97 -35.37 13.49 -127.65 -1.72 -37.09 16 13 C -0.59 -21.60 5.85 71.98 0.42 -21.18 16 14 C -0.01 -0.63 4.05 29.85 0.12 -0.51 16 15 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 16 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 17 C 0.02 0.88 5.47 84.66 0.46 1.34 16 18 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 19 Si 0.93 43.81 27.47 68.60 1.88 45.69 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 23 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.08 1.00 7.14 -2.39 -0.02 0.99 16 26 H 0.05 1.49 5.15 -2.39 -0.01 1.48 16 27 H 0.09 2.49 6.43 -2.39 -0.02 2.48 16 28 H 0.13 1.67 7.21 -2.39 -0.02 1.65 16 29 H 0.05 1.03 8.11 -2.39 -0.02 1.01 16 30 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 2.23 6.65 -2.39 -0.02 2.21 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.14 4.60 6.95 -2.39 -0.02 4.58 16 35 H 0.13 4.58 8.14 -2.39 -0.02 4.56 16 36 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 37 H 0.03 1.54 7.57 -2.38 -0.02 1.53 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -71.84 307.68 -0.41 -72.25 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.99 Total: 13.93 kcal Atomic # 6 Polarization: -51.88 SS G_CDS: 3.70 Total: -48.18 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -1.30 Total: -84.19 kcal Atomic # 8 Polarization: -80.49 SS G_CDS: -5.41 Total: -85.90 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 16 Polarization: 86.67 SS G_CDS: -0.28 Total: 86.39 kcal Total: -71.84 -0.41 -72.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115594398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.476 kcal (2) G-P(sol) polarization free energy of solvation -71.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds