Wall clock time and date at job start Mon Mar 30 2020 01:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47009 * 2 1 4 4 H 1.08995 * 109.51745 * 305.10694 * 3 2 1 5 5 C 1.53297 * 109.51036 * 184.99767 * 3 2 1 6 6 N 1.47150 * 108.41463 * 187.75699 * 5 3 2 7 7 S 1.65599 * 120.98218 * 230.54133 * 6 5 3 8 8 O 1.42102 * 104.28001 * 206.07218 * 7 6 5 9 9 O 1.42098 * 104.28010 * 333.93409 * 7 6 5 10 10 C 1.81403 * 104.44596 * 90.00574 * 7 6 5 11 11 C 1.53005 * 109.47017 * 179.97438 * 10 7 6 12 12 C 1.50697 * 109.47035 * 179.97438 * 11 10 7 13 13 H 1.07997 * 120.00263 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99821 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00002 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99947 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46919 * 60.00389 * 16 14 12 18 18 H 1.48494 * 109.47028 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46945 * 300.00281 * 16 14 12 20 20 C 1.47227 * 117.98768 * 50.52570 * 6 5 3 21 21 C 1.53299 * 108.40126 * 309.48190 * 20 6 5 22 22 O 1.42959 * 109.22435 * 52.30769 * 21 20 6 23 23 H 1.09003 * 109.46998 * 59.99368 * 1 2 3 24 24 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47131 * 299.99903 * 1 2 3 26 26 H 1.08999 * 109.46878 * 240.00576 * 2 1 3 27 27 H 1.08993 * 109.46961 * 120.00548 * 2 1 3 28 28 H 1.09002 * 109.68431 * 307.50314 * 5 3 2 29 29 H 1.08999 * 109.67914 * 68.01899 * 5 3 2 30 30 H 1.09000 * 109.46995 * 299.99489 * 10 7 6 31 31 H 1.08992 * 109.47364 * 60.00184 * 10 7 6 32 32 H 1.08996 * 109.47280 * 299.99998 * 11 10 7 33 33 H 1.09001 * 109.46885 * 60.00107 * 11 10 7 34 34 H 0.97002 * 119.99626 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.67268 * 189.75452 * 20 6 5 36 36 H 1.09002 * 109.70663 * 69.23167 * 20 6 5 37 37 H 1.08996 * 109.51416 * 292.37699 * 21 20 6 38 38 H 1.09008 * 109.54832 * 172.25461 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9827 -0.8404 5 6 3.5678 1.4454 -0.1259 6 7 4.0472 2.8236 0.0639 7 16 5.0857 3.5219 -1.0206 8 8 5.7812 4.5001 -0.2600 9 8 5.7725 2.4238 -1.6052 10 6 4.0011 4.3158 -2.2389 11 6 4.8526 5.0050 -3.3071 12 6 3.9516 5.6641 -4.3195 13 1 2.8791 5.5983 -4.2116 14 6 4.4967 6.3519 -5.3829 15 7 5.8028 6.4324 -5.5140 16 14 3.3799 7.1694 -6.6375 17 1 2.5264 8.1770 -5.9582 18 1 4.2063 7.8393 -7.6736 19 1 2.5193 6.1424 -7.2776 20 6 3.5754 3.5625 1.2467 21 6 2.0472 3.4564 1.3058 22 8 1.6673 2.0807 1.2239 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 4.0003 0.7979 0.6369 29 1 3.8552 1.0897 -1.1153 30 1 3.3689 3.5621 -2.7083 31 1 3.3753 5.0559 -1.7404 32 1 5.4845 5.7588 -2.8375 33 1 5.4788 4.2652 -3.8057 34 1 6.1862 6.9166 -6.2620 35 1 3.8679 4.6094 1.1661 36 1 4.0086 3.1288 2.1480 37 1 1.6116 4.0048 0.4706 38 1 1.6883 3.8780 2.2448 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171979698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:26 Heat of formation + Delta-G solvation = -130.483176 kcal Electronic energy + Delta-G solvation = -20558.635438 eV Core-core repulsion = 17334.969778 eV Total energy + Delta-G solvation = -3223.665660 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.54208 -36.73615 -35.54466 -34.89167 -34.14584 -33.92856 -31.20151 -30.24600 -27.14146 -25.63925 -24.41037 -22.44219 -21.60160 -20.80500 -18.63001 -17.69181 -16.80989 -16.59877 -16.05785 -15.66092 -15.24713 -15.01421 -14.62357 -14.59153 -14.07884 -13.80453 -13.47645 -13.36180 -12.56292 -12.37206 -12.11141 -11.92398 -11.80670 -11.70679 -11.59493 -11.41450 -11.22946 -11.14117 -11.09817 -11.01106 -10.59256 -10.45958 -10.42208 -10.28740 -9.73890 -9.26597 -8.72568 -8.53244 -6.15399 -4.21449 0.66627 2.89392 3.24890 3.29944 3.31577 3.58123 4.23676 4.35030 4.37085 4.63022 4.66181 4.77501 4.92585 4.98961 5.13676 5.18648 5.19744 5.27509 5.36609 5.47411 5.54472 5.56475 5.66958 5.72780 5.77987 5.81721 5.94275 6.06431 6.14128 6.42727 6.50378 7.03470 7.25357 7.31396 7.76963 8.13703 8.81584 9.43495 10.95568 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019947 B = 0.005055 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.382389 B = 5537.294674 C = 6200.296199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.074 3.926 4 H 0.066 0.934 5 C 0.094 3.906 6 N -1.010 6.010 7 S 2.589 3.411 8 O -0.962 6.962 9 O -0.962 6.962 10 C -0.589 4.589 11 C 0.029 3.971 12 C -0.522 4.522 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.901 3.099 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.088 3.912 21 C 0.047 3.953 22 O -0.374 6.374 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.266 0.734 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.565 -9.871 12.825 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.084 0.916 5 C -0.032 4.032 6 N -0.847 5.847 7 S 2.688 3.312 8 O -0.952 6.952 9 O -0.952 6.952 10 C -0.722 4.722 11 C -0.010 4.010 12 C -0.561 4.561 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.201 1.201 20 C -0.037 4.037 21 C -0.031 4.031 22 O -0.293 6.293 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.528 -9.955 12.955 18.429 hybrid contribution -1.000 0.826 -1.130 1.720 sum -9.527 -9.129 11.825 17.718 Atomic orbital electron populations 1.21704 0.95038 1.01515 1.02369 1.21525 0.96915 0.93855 1.03115 1.22586 0.93563 0.94656 0.87700 0.91558 1.22063 0.94479 0.82871 1.03770 1.58153 1.66650 1.22339 1.37536 1.05809 0.75721 0.74561 0.75065 1.93537 1.70425 1.62232 1.69026 1.93536 1.70793 1.52309 1.78579 1.30505 1.14881 1.11998 1.14827 1.18963 0.94603 0.95863 0.91609 1.20949 0.92806 1.33947 1.08424 0.92125 1.25065 0.95206 0.96156 0.97973 1.69944 1.10159 1.41692 1.31008 0.86522 0.80354 0.79587 0.80768 1.20074 1.21023 1.20068 1.22048 0.95157 0.97821 0.88711 1.22985 0.93917 0.83320 1.02896 1.87915 1.79705 1.23767 1.37896 0.92778 0.92746 0.91989 0.90137 0.90885 0.90557 0.88304 0.86346 0.86333 0.94841 0.94844 0.92424 0.88251 0.90571 0.92414 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.81 37.16 0.36 -0.87 16 2 C -0.12 -1.01 5.64 -26.73 -0.15 -1.16 16 3 C 0.07 0.80 2.78 -26.58 -0.07 0.72 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 5 C 0.09 1.14 5.79 -3.53 -0.02 1.12 16 6 N -1.01 -14.09 3.28 -113.00 -0.37 -14.46 16 7 S 2.59 46.90 5.42 -107.50 -0.58 46.32 16 8 O -0.96 -19.89 16.82 -57.54 -0.97 -20.86 16 9 O -0.96 -19.92 16.81 -57.54 -0.97 -20.88 16 10 C -0.59 -11.17 6.12 37.16 0.23 -10.94 16 11 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 12 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 16 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.09 1.03 6.50 -3.49 -0.02 1.01 16 21 C 0.05 0.47 6.98 37.31 0.26 0.73 16 22 O -0.37 -4.24 9.93 -35.23 -0.35 -4.59 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.56 7.83 -51.93 -0.41 0.15 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.19 7.23 -51.93 -0.38 0.81 16 30 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 31 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.10 1.14 7.23 -51.93 -0.38 0.77 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -34.12 323.76 -8.80 -42.92 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.19 Total: -1.86 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 0.03 Total: -21.88 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.37 Total: -40.06 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -2.28 Total: -46.33 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 46.90 SS G_CDS: -0.58 Total: 46.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.12 -8.80 -42.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171979698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.563 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds