Wall clock time and date at job start Mon Mar 30 2020 01:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47009 * 2 1 4 4 H 1.08995 * 109.51745 * 305.10694 * 3 2 1 5 5 C 1.53297 * 109.51036 * 184.99767 * 3 2 1 6 6 N 1.47150 * 108.41463 * 187.75699 * 5 3 2 7 7 S 1.65599 * 120.98218 * 230.54133 * 6 5 3 8 8 O 1.42102 * 104.28001 * 206.07218 * 7 6 5 9 9 O 1.42098 * 104.28010 * 333.93409 * 7 6 5 10 10 C 1.81403 * 104.44596 * 90.00574 * 7 6 5 11 11 C 1.53005 * 109.47017 * 179.97438 * 10 7 6 12 12 C 1.50697 * 109.47035 * 179.97438 * 11 10 7 13 13 H 1.07997 * 120.00263 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99821 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00002 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99947 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46919 * 60.00389 * 16 14 12 18 18 H 1.48494 * 109.47028 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46945 * 300.00281 * 16 14 12 20 20 C 1.47227 * 117.98768 * 50.52570 * 6 5 3 21 21 C 1.53299 * 108.40126 * 309.48190 * 20 6 5 22 22 O 1.42959 * 109.22435 * 52.30769 * 21 20 6 23 23 H 1.09003 * 109.46998 * 59.99368 * 1 2 3 24 24 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47131 * 299.99903 * 1 2 3 26 26 H 1.08999 * 109.46878 * 240.00576 * 2 1 3 27 27 H 1.08993 * 109.46961 * 120.00548 * 2 1 3 28 28 H 1.09002 * 109.68431 * 307.50314 * 5 3 2 29 29 H 1.08999 * 109.67914 * 68.01899 * 5 3 2 30 30 H 1.09000 * 109.46995 * 299.99489 * 10 7 6 31 31 H 1.08992 * 109.47364 * 60.00184 * 10 7 6 32 32 H 1.08996 * 109.47280 * 299.99998 * 11 10 7 33 33 H 1.09001 * 109.46885 * 60.00107 * 11 10 7 34 34 H 0.97002 * 119.99626 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.67268 * 189.75452 * 20 6 5 36 36 H 1.09002 * 109.70663 * 69.23167 * 20 6 5 37 37 H 1.08996 * 109.51416 * 292.37699 * 21 20 6 38 38 H 1.09008 * 109.54832 * 172.25461 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9827 -0.8404 5 6 3.5678 1.4454 -0.1259 6 7 4.0472 2.8236 0.0639 7 16 5.0857 3.5219 -1.0206 8 8 5.7812 4.5001 -0.2600 9 8 5.7725 2.4238 -1.6052 10 6 4.0011 4.3158 -2.2389 11 6 4.8526 5.0050 -3.3071 12 6 3.9516 5.6641 -4.3195 13 1 2.8791 5.5983 -4.2116 14 6 4.4967 6.3519 -5.3829 15 7 5.8028 6.4324 -5.5140 16 14 3.3799 7.1694 -6.6375 17 1 2.5264 8.1770 -5.9582 18 1 4.2063 7.8393 -7.6736 19 1 2.5193 6.1424 -7.2776 20 6 3.5754 3.5625 1.2467 21 6 2.0472 3.4564 1.3058 22 8 1.6673 2.0807 1.2239 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 4.0003 0.7979 0.6369 29 1 3.8552 1.0897 -1.1153 30 1 3.3689 3.5621 -2.7083 31 1 3.3753 5.0559 -1.7404 32 1 5.4845 5.7588 -2.8375 33 1 5.4788 4.2652 -3.8057 34 1 6.1862 6.9166 -6.2620 35 1 3.8679 4.6094 1.1661 36 1 4.0086 3.1288 2.1480 37 1 1.6116 4.0048 0.4706 38 1 1.6883 3.8780 2.2448 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171979698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:26 Heat of formation + Delta-G solvation = -155.416691 kcal Electronic energy + Delta-G solvation = -20559.716636 eV Core-core repulsion = 17334.969778 eV Total energy + Delta-G solvation = -3224.746858 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.41952 -38.30430 -37.10447 -35.96544 -35.86117 -34.90816 -33.15661 -31.06041 -28.09327 -27.59844 -25.25673 -23.81328 -22.91721 -21.73308 -19.96601 -19.18038 -18.41340 -17.71315 -17.26503 -17.16741 -16.57190 -16.30078 -15.89263 -15.75443 -15.14137 -15.09973 -14.54582 -14.48411 -14.12371 -13.77175 -13.48308 -13.28227 -13.26260 -12.93769 -12.91669 -12.82905 -12.68628 -12.42407 -12.26775 -12.20649 -11.94988 -11.84769 -11.80713 -11.50091 -11.26011 -10.90105 -10.65383 -9.79058 -8.27296 -6.41842 -0.80502 1.40438 1.43687 1.51967 1.61047 2.37115 2.78081 2.81306 3.05609 3.07194 3.59147 3.71121 3.96368 4.00520 4.06514 4.14245 4.17211 4.31853 4.39255 4.50833 4.62768 4.69269 4.71991 4.82565 4.88378 5.00273 5.10349 5.17765 5.23051 5.23876 5.29818 5.46626 5.49926 5.66145 6.03845 6.22875 6.71391 7.28641 8.84773 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019947 B = 0.005055 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.382389 B = 5537.294674 C = 6200.296199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.075 3.925 4 H 0.067 0.933 5 C 0.086 3.914 6 N -1.002 6.002 7 S 2.612 3.388 8 O -0.991 6.991 9 O -0.991 6.991 10 C -0.585 4.585 11 C 0.021 3.979 12 C -0.540 4.540 13 H 0.076 0.924 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.284 1.284 19 H -0.263 1.263 20 C 0.079 3.921 21 C 0.047 3.953 22 O -0.381 6.381 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.006 0.994 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 -10.306 13.379 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.016 3.984 4 H 0.085 0.915 5 C -0.039 4.039 6 N -0.841 5.841 7 S 2.711 3.289 8 O -0.981 6.981 9 O -0.982 6.982 10 C -0.717 4.717 11 C -0.018 4.018 12 C -0.579 4.579 13 H 0.094 0.906 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.797 3.203 17 H -0.188 1.188 18 H -0.210 1.210 19 H -0.188 1.188 20 C -0.045 4.045 21 C -0.031 4.031 22 O -0.300 6.300 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.025 0.975 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.966 -10.389 13.512 20.267 hybrid contribution -0.238 0.908 -1.206 1.529 sum -11.205 -9.481 12.306 19.154 Atomic orbital electron populations 1.21680 0.94612 1.02196 1.01890 1.21564 0.97221 0.92645 1.03897 1.22650 0.92233 0.95891 0.87667 0.91527 1.22331 0.95780 0.81633 1.04164 1.57784 1.66206 1.23096 1.37053 1.04835 0.75611 0.73672 0.74812 1.93491 1.71648 1.63385 1.69588 1.93489 1.72031 1.53133 1.79515 1.30385 1.14662 1.12879 1.13822 1.18817 0.94883 0.94990 0.93065 1.21466 0.93821 1.33763 1.08877 0.90622 1.26111 0.96692 0.96869 1.00405 1.70095 1.12376 1.42888 1.31992 0.85366 0.78291 0.78783 0.77833 1.18752 1.20957 1.18750 1.22350 0.96659 0.97702 0.87836 1.23125 0.92367 0.83000 1.04571 1.87921 1.79611 1.24354 1.38091 0.92912 0.91535 0.92770 0.89004 0.90518 0.89554 0.88417 0.84185 0.84077 0.97533 0.97562 0.92347 0.88215 0.89503 0.92055 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.81 71.98 0.71 -1.38 16 2 C -0.12 -1.74 5.64 30.59 0.17 -1.57 16 3 C 0.07 1.44 2.78 30.69 0.09 1.52 16 4 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 5 C 0.09 1.93 5.79 86.35 0.50 2.43 16 6 N -1.00 -26.54 3.28 -511.43 -1.68 -28.22 16 7 S 2.61 94.52 5.42 -56.49 -0.31 94.21 16 8 O -0.99 -41.39 16.82 -127.65 -2.15 -43.54 16 9 O -0.99 -41.53 16.81 -127.65 -2.15 -43.68 16 10 C -0.59 -21.93 6.12 71.98 0.44 -21.49 16 11 C 0.02 1.11 4.98 29.85 0.15 1.26 16 12 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 13 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 14 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 15 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 16 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 20 C 0.08 1.70 6.50 86.34 0.56 2.26 16 21 C 0.05 0.82 6.98 72.08 0.50 1.32 16 22 O -0.38 -7.62 9.93 -148.98 -1.48 -9.10 16 23 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 0.86 7.83 -2.39 -0.02 0.84 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.10 2.22 7.23 -2.39 -0.02 2.20 16 30 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 31 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.10 2.14 7.23 -2.39 -0.02 2.12 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -73.92 323.76 -0.61 -74.52 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.02 Total: 12.04 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 3.81 Total: -44.75 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -1.39 Total: -84.54 kcal Atomic # 8 Polarization: -90.54 SS G_CDS: -5.77 Total: -96.32 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 94.52 SS G_CDS: -0.31 Total: 94.21 kcal Total: -73.92 -0.61 -74.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171979698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.893 kcal (2) G-P(sol) polarization free energy of solvation -73.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds