Wall clock time and date at job start Mon Mar 30 2020 01:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52992 * 109.47093 * 2 1 4 4 H 1.09006 * 109.51428 * 55.10000 * 3 2 1 5 5 C 1.53296 * 109.51391 * 175.25255 * 3 2 1 6 6 N 1.47157 * 108.38524 * 172.22484 * 5 3 2 7 7 S 1.65603 * 120.97852 * 129.47830 * 6 5 3 8 8 O 1.42103 * 104.27318 * 206.06929 * 7 6 5 9 9 O 1.42100 * 104.27655 * 333.92582 * 7 6 5 10 10 C 1.81393 * 104.45113 * 89.99980 * 7 6 5 11 11 C 1.52998 * 109.47274 * 179.97438 * 10 7 6 12 12 C 1.50707 * 109.47105 * 180.02562 * 11 10 7 13 13 H 1.07995 * 119.99832 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99922 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00119 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99914 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47054 * 90.00378 * 16 14 12 18 18 H 1.48498 * 109.46793 * 210.00269 * 16 14 12 19 19 H 1.48499 * 109.46940 * 329.99942 * 16 14 12 20 20 C 1.47164 * 118.07636 * 309.49736 * 6 5 3 21 21 C 1.53300 * 108.37481 * 50.45392 * 20 6 5 22 22 O 1.42961 * 109.26618 * 307.77372 * 21 20 6 23 23 H 1.08999 * 109.47038 * 300.00133 * 1 2 3 24 24 H 1.09001 * 109.46755 * 60.00552 * 1 2 3 25 25 H 1.08997 * 109.46605 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47038 * 239.99867 * 2 1 3 27 27 H 1.09002 * 109.47037 * 119.99916 * 2 1 3 28 28 H 1.09004 * 109.68127 * 291.94407 * 5 3 2 29 29 H 1.08996 * 109.68407 * 52.46343 * 5 3 2 30 30 H 1.08999 * 109.47385 * 299.99860 * 10 7 6 31 31 H 1.09004 * 109.47312 * 59.99668 * 10 7 6 32 32 H 1.09001 * 109.46922 * 299.99356 * 11 10 7 33 33 H 1.08989 * 109.47333 * 60.00102 * 11 10 7 34 34 H 0.97000 * 120.00106 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.64217 * 290.76056 * 20 6 5 36 36 H 1.08999 * 109.72598 * 170.19708 * 20 6 5 37 37 H 1.09002 * 109.51290 * 187.82368 * 21 20 6 38 38 H 1.08997 * 109.51158 * 67.72466 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6072 1.9817 0.8427 5 6 3.5684 1.4452 0.1196 6 7 4.0463 2.8240 -0.0707 7 16 5.0893 3.5214 1.0100 8 8 4.8408 4.9151 0.8874 9 8 4.8391 2.8371 2.2300 10 6 6.7388 3.1109 0.3767 11 6 7.8028 3.7074 1.3002 12 6 9.1732 3.3669 0.7736 13 1 9.2749 2.7830 -0.1292 14 6 10.2969 3.7998 1.4450 15 7 11.4927 3.5023 0.9858 16 14 10.1207 4.8092 3.0070 17 1 10.0733 3.9007 4.1807 18 1 11.2815 5.7261 3.1373 19 1 8.8674 5.6032 2.9445 20 6 3.5701 3.5656 -1.2493 21 6 2.0418 3.4584 -1.3027 22 8 1.6623 2.0825 -1.2213 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8599 1.0888 1.1076 29 1 3.9977 0.7984 -0.6455 30 1 6.8548 2.0277 0.3402 31 1 6.8560 3.5227 -0.6257 32 1 7.6867 4.7906 1.3361 33 1 7.6858 3.2960 2.3026 34 1 12.2833 3.8066 1.4583 35 1 4.0003 3.1332 -2.1527 36 1 3.8621 4.6126 -1.1678 37 1 1.6798 3.8811 -2.2399 38 1 1.6090 4.0057 -0.4653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171979700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:28 Heat of formation + Delta-G solvation = -151.240597 kcal Electronic energy + Delta-G solvation = -20438.865002 eV Core-core repulsion = 17214.299233 eV Total energy + Delta-G solvation = -3224.565769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42880 -38.32343 -37.12396 -35.96952 -35.88340 -34.92183 -33.49965 -31.06064 -28.24403 -27.75827 -25.29152 -23.45241 -22.85128 -21.85059 -19.96717 -19.37641 -18.68445 -17.76093 -17.24159 -17.16310 -16.44696 -16.26136 -15.95786 -15.80073 -15.22758 -15.13771 -14.83196 -14.56419 -14.14727 -13.82993 -13.57473 -13.30618 -13.29627 -13.09914 -12.99415 -12.94746 -12.63236 -12.41751 -12.26690 -12.01271 -11.96284 -11.83968 -11.73673 -11.43509 -11.27650 -11.11948 -10.86359 -9.79265 -8.38383 -6.44634 -0.82611 1.30968 1.32692 1.42789 1.56796 2.27985 2.72529 2.78899 2.95398 3.06019 3.57166 3.70543 3.92195 3.96833 4.02648 4.13445 4.18093 4.33880 4.38486 4.49069 4.53024 4.62380 4.68047 4.80894 4.85553 4.98031 5.03232 5.05899 5.10271 5.15774 5.27937 5.44953 5.45619 5.47438 6.14534 6.19801 6.61411 7.19956 8.77219 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034819 B = 0.004333 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.969964 B = 6459.820944 C = 6566.518692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.079 3.921 4 H 0.055 0.945 5 C 0.079 3.921 6 N -1.002 6.002 7 S 2.615 3.385 8 O -0.984 6.984 9 O -0.985 6.985 10 C -0.586 4.586 11 C -0.017 4.017 12 C -0.529 4.529 13 H 0.048 0.952 14 C 0.014 3.986 15 N -0.939 5.939 16 Si 0.926 3.074 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.250 1.250 20 C 0.073 3.927 21 C 0.051 3.949 22 O -0.381 6.381 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.270 0.730 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.125 -4.494 -4.295 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.019 3.981 4 H 0.073 0.927 5 C -0.046 4.046 6 N -0.841 5.841 7 S 2.713 3.287 8 O -0.975 6.975 9 O -0.975 6.975 10 C -0.718 4.718 11 C -0.056 4.056 12 C -0.568 4.568 13 H 0.067 0.933 14 C -0.185 4.185 15 N -0.579 5.579 16 Si 0.748 3.252 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.173 1.173 20 C -0.052 4.052 21 C -0.027 4.027 22 O -0.299 6.299 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.151 0.849 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.308 -4.063 -3.642 22.966 hybrid contribution 1.235 0.334 0.326 1.321 sum -21.073 -3.729 -3.317 21.656 Atomic orbital electron populations 1.21682 0.94662 1.02256 1.01790 1.21571 0.97226 0.92447 1.04025 1.22554 0.92506 0.95768 0.87237 0.92724 1.22417 0.96075 0.81684 1.04404 1.57714 1.61043 1.24503 1.40881 1.04714 0.76574 0.73414 0.73957 1.93501 1.84650 1.32699 1.86629 1.93499 1.84610 1.75585 1.43803 1.30328 1.18026 1.11961 1.11465 1.19376 0.94244 0.96827 0.95146 1.21167 0.89789 1.34647 1.11204 0.93340 1.25884 0.94811 0.96822 1.00981 1.70005 0.98580 1.47498 1.41827 0.86012 0.79229 0.79854 0.80066 1.18440 1.19817 1.17329 1.22422 0.96845 0.97976 0.87938 1.23027 0.92774 0.82846 1.04049 1.87919 1.79502 1.24243 1.38280 0.93062 0.92792 0.91379 0.90213 0.89000 0.88081 0.88683 0.84369 0.84348 0.94946 0.95062 0.92059 0.88621 0.87913 0.84944 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.81 71.99 0.71 -1.32 16 2 C -0.11 -1.69 5.65 30.60 0.17 -1.52 16 3 C 0.08 1.53 2.78 30.69 0.09 1.61 16 4 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 5 C 0.08 1.67 5.96 86.35 0.51 2.18 16 6 N -1.00 -24.65 3.27 -511.57 -1.67 -26.32 16 7 S 2.62 85.37 5.47 -56.49 -0.31 85.06 16 8 O -0.98 -36.64 16.61 -127.65 -2.12 -38.76 16 9 O -0.98 -36.65 16.62 -127.65 -2.12 -38.77 16 10 C -0.59 -20.88 6.11 71.98 0.44 -20.44 16 11 C -0.02 -0.79 4.05 29.85 0.12 -0.67 16 12 C -0.53 -29.90 9.66 25.60 0.25 -29.65 16 13 H 0.05 2.93 7.99 -2.91 -0.02 2.90 16 14 C 0.01 0.79 5.47 84.65 0.46 1.25 16 15 N -0.94 -57.68 13.96 21.45 0.30 -57.38 16 16 Si 0.93 43.66 27.47 68.60 1.88 45.55 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 20 C 0.07 1.46 6.67 86.35 0.58 2.04 16 21 C 0.05 0.90 6.98 72.08 0.50 1.41 16 22 O -0.38 -7.62 9.92 -148.98 -1.48 -9.10 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.83 7.82 -2.39 -0.02 0.81 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 2.19 6.88 -2.38 -0.02 2.17 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 31 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 32 H 0.03 1.50 7.20 -2.39 -0.02 1.48 16 33 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 2.11 6.88 -2.39 -0.02 2.09 16 37 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -72.46 319.43 -0.72 -73.18 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.97 Total: 11.66 kcal Atomic # 6 Polarization: -48.93 SS G_CDS: 3.83 Total: -45.10 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.38 Total: -83.70 kcal Atomic # 8 Polarization: -80.92 SS G_CDS: -5.72 Total: -86.64 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Atomic # 16 Polarization: 85.37 SS G_CDS: -0.31 Total: 85.06 kcal Total: -72.46 -0.72 -73.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171979700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.057 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds