Wall clock time and date at job start Mon Mar 30 2020 01:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47131 * 2 1 4 4 H 1.08998 * 109.47081 * 54.81291 * 3 2 1 5 5 C 1.50692 * 109.47244 * 174.81932 * 3 2 1 6 6 H 1.07999 * 120.00545 * 119.99744 * 5 3 2 7 7 C 1.37888 * 119.99696 * 300.27058 * 5 3 2 8 8 N 1.31504 * 119.99953 * 359.72465 * 7 5 3 9 9 Si 1.86797 * 119.99862 * 179.72478 * 7 5 3 10 10 H 1.48501 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47105 * 119.99974 * 9 7 5 12 12 H 1.48497 * 109.47168 * 239.99707 * 9 7 5 13 13 N 1.46507 * 109.46506 * 294.81295 * 3 2 1 14 14 S 1.65599 * 119.99724 * 143.70085 * 13 3 2 15 15 O 1.42096 * 104.28134 * 179.38005 * 14 13 3 16 16 O 1.42105 * 104.27703 * 307.24190 * 14 13 3 17 17 C 1.81403 * 104.45064 * 63.31044 * 14 13 3 18 18 C 1.53001 * 109.47271 * 179.97438 * 17 14 13 19 19 H 1.08991 * 110.43434 * 303.90920 * 18 17 14 20 20 C 1.54810 * 110.48726 * 181.21744 * 18 17 14 21 21 C 1.54992 * 102.09563 * 220.44334 * 20 18 17 22 22 O 1.44378 * 103.48860 * 37.02587 * 21 20 18 23 23 C 1.43738 * 106.97730 * 319.93931 * 22 21 20 24 24 H 1.08999 * 109.47307 * 295.51979 * 1 2 3 25 25 H 1.09003 * 109.47277 * 55.52069 * 1 2 3 26 26 H 1.09003 * 109.47128 * 175.52529 * 1 2 3 27 27 H 1.08991 * 109.47233 * 239.99740 * 2 1 3 28 28 H 1.09001 * 109.47143 * 119.99369 * 2 1 3 29 29 H 0.97002 * 120.00585 * 180.02562 * 8 7 5 30 30 H 0.96999 * 120.00470 * 323.69953 * 13 3 2 31 31 H 1.09006 * 109.46935 * 299.99965 * 17 14 13 32 32 H 1.08997 * 109.46906 * 59.99701 * 17 14 13 33 33 H 1.09003 * 110.90895 * 338.64612 * 20 18 17 34 34 H 1.09010 * 110.90488 * 102.24413 * 20 18 17 35 35 H 1.09000 * 110.61722 * 278.52617 * 21 20 18 36 36 H 1.09001 * 110.61948 * 155.52869 * 21 20 18 37 37 H 1.08999 * 109.88095 * 267.09164 * 23 22 21 38 38 H 1.08995 * 109.88260 * 145.93714 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 0.8399 5 6 3.5414 1.4445 0.1283 6 1 4.1491 1.8882 -0.6465 7 6 4.1397 0.8747 1.2322 8 7 3.3999 0.3345 2.1757 9 14 6.0012 0.8703 1.3876 10 1 6.5986 1.5357 0.2020 11 1 6.3970 1.6026 2.6174 12 1 6.4880 -0.5304 1.4673 13 7 1.6562 2.0960 -1.2538 14 16 1.2284 3.6958 -1.2564 15 8 0.9409 3.9795 -2.6188 16 8 0.2200 3.7905 -0.2597 17 6 2.7294 4.5667 -0.7280 18 6 2.4592 6.0721 -0.6907 19 1 2.1036 6.4191 -1.6608 20 6 3.7355 6.8415 -0.2714 21 6 3.1636 7.9289 0.6733 22 8 2.1032 7.2432 1.3732 23 6 1.4360 6.4094 0.4112 24 1 -0.3634 0.4427 0.9274 25 1 -0.3634 0.5818 -0.8471 26 1 -0.3633 -1.0246 -0.0802 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8206 -0.0660 2.9525 30 1 1.6527 1.5917 -2.0824 31 1 3.0173 4.2240 0.2660 32 1 3.5360 4.3599 -1.4314 33 1 4.4264 6.1878 0.2611 34 1 4.2192 7.2937 -1.1373 35 1 2.7660 8.7658 0.0991 36 1 3.9270 8.2702 1.3725 37 1 0.5901 6.9447 -0.0200 38 1 1.0918 5.4929 0.8903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186425199.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:25 Heat of formation + Delta-G solvation = -134.781298 kcal Electronic energy + Delta-G solvation = -21040.349948 eV Core-core repulsion = 17816.497907 eV Total energy + Delta-G solvation = -3223.852041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.38781 -36.60846 -35.93970 -35.38895 -33.63279 -32.27769 -30.60295 -29.88102 -26.72812 -26.44603 -23.06883 -22.69129 -20.73733 -20.17601 -18.71520 -17.15203 -16.76743 -16.60721 -15.82625 -15.81019 -15.37509 -14.89940 -14.73713 -13.82924 -13.47153 -13.12870 -13.03532 -12.91963 -12.45738 -12.17523 -11.85306 -11.69550 -11.55944 -11.45025 -11.38269 -11.23572 -11.08027 -11.01800 -10.86517 -10.76481 -10.35148 -10.14601 -9.85985 -9.75407 -9.68134 -9.57797 -8.55947 -8.22815 -6.19761 -4.31284 0.89735 3.16896 3.26369 3.27328 3.46243 3.92864 4.20649 4.29338 4.39278 4.67416 4.73940 4.95753 5.08966 5.14583 5.22034 5.25195 5.56764 5.66728 5.69398 5.82810 5.98215 6.02955 6.15907 6.25546 6.27624 6.39417 6.56918 6.85302 6.87408 7.02689 7.17826 7.53519 7.59873 7.83481 7.99969 8.17435 8.73728 9.37260 10.83455 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.007930 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.398077 B = 3530.120090 C = 4709.059593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.544 4.544 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -1.104 6.104 14 S 2.610 3.390 15 O -0.987 6.987 16 O -0.962 6.962 17 C -0.618 4.618 18 C -0.114 4.114 19 H 0.092 0.908 20 C -0.143 4.143 21 C 0.043 3.957 22 O -0.371 6.371 23 C 0.026 3.974 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.038 0.962 28 H 0.104 0.896 29 H 0.265 0.735 30 H 0.405 0.595 31 H 0.151 0.849 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 8.966 -4.658 10.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.167 3.833 4 H 0.069 0.931 5 C -0.583 4.583 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.863 5.863 14 S 2.703 3.297 15 O -0.977 6.977 16 O -0.952 6.952 17 C -0.746 4.746 18 C -0.134 4.134 19 H 0.110 0.890 20 C -0.181 4.181 21 C -0.034 4.034 22 O -0.289 6.289 23 C -0.051 4.051 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.075 0.925 30 H 0.237 0.763 31 H 0.169 0.831 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.658 9.330 -4.294 10.291 hybrid contribution 1.933 -0.437 -0.297 2.004 sum 1.275 8.892 -4.590 10.088 Atomic orbital electron populations 1.21826 0.98730 0.99178 1.00876 1.21790 0.92306 0.99029 1.03000 1.18658 0.94097 0.91087 0.79465 0.93089 1.21654 0.91559 1.39246 1.05847 0.91825 1.24929 0.98323 0.94750 0.95547 1.69857 1.35061 1.37471 1.09436 0.86531 0.85354 0.77966 0.78121 1.19746 1.20848 1.20840 1.55482 1.86195 1.26852 1.17772 1.04674 0.76697 0.74563 0.73815 1.93519 1.84474 1.84988 1.34723 1.93562 1.53906 1.86036 1.61730 1.30696 1.23657 1.05095 1.15188 1.22305 0.97503 0.93210 1.00378 0.88973 1.23203 0.97155 0.97657 1.00119 1.23588 0.90011 0.94684 0.95137 1.88898 1.47417 1.59624 1.33009 1.23746 0.94316 0.96840 0.90208 0.93328 0.94170 0.94725 0.94293 0.87759 0.92484 0.76260 0.83125 0.84816 0.89382 0.89951 0.92252 0.88860 0.91666 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.85 37.16 0.37 -2.56 16 2 C -0.12 -2.67 5.38 -26.73 -0.14 -2.81 16 3 C 0.27 6.11 2.15 -69.08 -0.15 5.96 16 4 H 0.05 1.27 7.53 -51.93 -0.39 0.87 16 5 C -0.54 -13.04 8.23 -34.44 -0.28 -13.32 16 6 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 7 C 0.07 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.88 -23.00 11.28 55.43 0.63 -22.37 16 9 Si 0.89 19.56 29.54 -169.99 -5.02 14.54 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -1.10 -21.21 4.72 -5.88 -0.03 -21.24 16 14 S 2.61 47.35 5.21 -107.50 -0.56 46.79 16 15 O -0.99 -19.18 18.08 -57.54 -1.04 -20.22 16 16 O -0.96 -19.87 15.47 -57.54 -0.89 -20.77 16 17 C -0.62 -9.66 4.90 37.16 0.18 -9.48 16 18 C -0.11 -1.57 3.08 -89.09 -0.27 -1.85 16 19 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 20 C -0.14 -1.68 6.71 -24.73 -0.17 -1.85 16 21 C 0.04 0.50 7.72 38.21 0.29 0.79 16 22 O -0.37 -5.78 11.52 -35.23 -0.41 -6.18 16 23 C 0.03 0.39 6.82 37.73 0.26 0.65 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.75 7.64 -51.93 -0.40 0.36 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 2.55 5.94 -51.93 -0.31 2.25 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.40 7.06 8.81 -34.47 -0.30 6.76 16 31 H 0.15 2.57 7.85 -51.92 -0.41 2.16 16 32 H 0.13 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.09 1.10 7.87 -51.93 -0.41 0.69 16 34 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.11 1.86 5.91 -51.93 -0.31 1.55 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -29.54 318.23 -8.41 -37.95 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.87 Total: 9.57 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -0.01 Total: -22.86 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.60 Total: -43.61 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -2.34 Total: -47.17 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 47.35 SS G_CDS: -0.56 Total: 46.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.54 -8.41 -37.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186425199.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.830 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds