Wall clock time and date at job start Mon Mar 30 2020 01:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47131 * 2 1 4 4 H 1.08998 * 109.47081 * 54.81291 * 3 2 1 5 5 C 1.50692 * 109.47244 * 174.81932 * 3 2 1 6 6 H 1.07999 * 120.00545 * 119.99744 * 5 3 2 7 7 C 1.37888 * 119.99696 * 300.27058 * 5 3 2 8 8 N 1.31504 * 119.99953 * 359.72465 * 7 5 3 9 9 Si 1.86797 * 119.99862 * 179.72478 * 7 5 3 10 10 H 1.48501 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47105 * 119.99974 * 9 7 5 12 12 H 1.48497 * 109.47168 * 239.99707 * 9 7 5 13 13 N 1.46507 * 109.46506 * 294.81295 * 3 2 1 14 14 S 1.65599 * 119.99724 * 143.70085 * 13 3 2 15 15 O 1.42096 * 104.28134 * 179.38005 * 14 13 3 16 16 O 1.42105 * 104.27703 * 307.24190 * 14 13 3 17 17 C 1.81403 * 104.45064 * 63.31044 * 14 13 3 18 18 C 1.53001 * 109.47271 * 179.97438 * 17 14 13 19 19 H 1.08991 * 110.43434 * 303.90920 * 18 17 14 20 20 C 1.54810 * 110.48726 * 181.21744 * 18 17 14 21 21 C 1.54992 * 102.09563 * 220.44334 * 20 18 17 22 22 O 1.44378 * 103.48860 * 37.02587 * 21 20 18 23 23 C 1.43738 * 106.97730 * 319.93931 * 22 21 20 24 24 H 1.08999 * 109.47307 * 295.51979 * 1 2 3 25 25 H 1.09003 * 109.47277 * 55.52069 * 1 2 3 26 26 H 1.09003 * 109.47128 * 175.52529 * 1 2 3 27 27 H 1.08991 * 109.47233 * 239.99740 * 2 1 3 28 28 H 1.09001 * 109.47143 * 119.99369 * 2 1 3 29 29 H 0.97002 * 120.00585 * 180.02562 * 8 7 5 30 30 H 0.96999 * 120.00470 * 323.69953 * 13 3 2 31 31 H 1.09006 * 109.46935 * 299.99965 * 17 14 13 32 32 H 1.08997 * 109.46906 * 59.99701 * 17 14 13 33 33 H 1.09003 * 110.90895 * 338.64612 * 20 18 17 34 34 H 1.09010 * 110.90488 * 102.24413 * 20 18 17 35 35 H 1.09000 * 110.61722 * 278.52617 * 21 20 18 36 36 H 1.09001 * 110.61948 * 155.52869 * 21 20 18 37 37 H 1.08999 * 109.88095 * 267.09164 * 23 22 21 38 38 H 1.08995 * 109.88260 * 145.93714 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 0.8399 5 6 3.5414 1.4445 0.1283 6 1 4.1491 1.8882 -0.6465 7 6 4.1397 0.8747 1.2322 8 7 3.3999 0.3345 2.1757 9 14 6.0012 0.8703 1.3876 10 1 6.5986 1.5357 0.2020 11 1 6.3970 1.6026 2.6174 12 1 6.4880 -0.5304 1.4673 13 7 1.6562 2.0960 -1.2538 14 16 1.2284 3.6958 -1.2564 15 8 0.9409 3.9795 -2.6188 16 8 0.2200 3.7905 -0.2597 17 6 2.7294 4.5667 -0.7280 18 6 2.4592 6.0721 -0.6907 19 1 2.1036 6.4191 -1.6608 20 6 3.7355 6.8415 -0.2714 21 6 3.1636 7.9289 0.6733 22 8 2.1032 7.2432 1.3732 23 6 1.4360 6.4094 0.4112 24 1 -0.3634 0.4427 0.9274 25 1 -0.3634 0.5818 -0.8471 26 1 -0.3633 -1.0246 -0.0802 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8206 -0.0660 2.9525 30 1 1.6527 1.5917 -2.0824 31 1 3.0173 4.2240 0.2660 32 1 3.5360 4.3599 -1.4314 33 1 4.4264 6.1878 0.2611 34 1 4.2192 7.2937 -1.1373 35 1 2.7660 8.7658 0.0991 36 1 3.9270 8.2702 1.3725 37 1 0.5901 6.9447 -0.0200 38 1 1.0918 5.4929 0.8903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186425199.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:24 Heat of formation + Delta-G solvation = -156.269499 kcal Electronic energy + Delta-G solvation = -21041.281746 eV Core-core repulsion = 17816.497907 eV Total energy + Delta-G solvation = -3224.783839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.45151 -38.17794 -37.63539 -36.93792 -34.78812 -34.11695 -32.25417 -30.87661 -28.51743 -27.70252 -24.85320 -23.66749 -21.99597 -21.77385 -20.21154 -18.73786 -18.40337 -17.81661 -17.27966 -16.98361 -16.92154 -16.38631 -15.97876 -15.48179 -14.88735 -14.66374 -14.58721 -14.07655 -13.67669 -13.56906 -13.35546 -13.29373 -13.10087 -13.02551 -12.97300 -12.73210 -12.61180 -12.33273 -12.16320 -12.04662 -11.78407 -11.70869 -11.59112 -11.45278 -11.25070 -10.67455 -10.46025 -9.91568 -8.08691 -6.25306 -0.55280 1.43847 1.48283 1.56402 1.95480 2.44924 2.81785 2.92982 3.18519 3.27320 3.37025 3.58818 3.82447 4.13945 4.19008 4.31890 4.44186 4.48543 4.57059 4.60635 4.74234 4.77046 4.82322 4.89566 4.92201 4.96207 5.13037 5.16021 5.34514 5.45404 5.68226 5.79508 5.85328 6.03803 6.24317 6.47872 6.86422 7.45853 8.93915 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.007930 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.398077 B = 3530.120090 C = 4709.059593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.022 0.978 5 C -0.544 4.544 6 H 0.073 0.927 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.285 1.285 13 N -1.104 6.104 14 S 2.615 3.385 15 O -0.997 6.997 16 O -0.994 6.994 17 C -0.600 4.600 18 C -0.118 4.118 19 H 0.116 0.884 20 C -0.139 4.139 21 C 0.035 3.965 22 O -0.398 6.398 23 C 0.018 3.982 24 H 0.034 0.966 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.263 0.737 30 H 0.413 0.587 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 10.201 -6.135 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C 0.171 3.829 4 H 0.039 0.961 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.185 1.185 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.863 5.863 14 S 2.711 3.289 15 O -0.987 6.987 16 O -0.984 6.984 17 C -0.732 4.732 18 C -0.138 4.138 19 H 0.134 0.866 20 C -0.177 4.177 21 C -0.040 4.040 22 O -0.318 6.318 23 C -0.059 4.059 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.247 0.753 31 H 0.154 0.846 32 H 0.175 0.825 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.686 10.547 -5.806 12.059 hybrid contribution 1.493 -0.757 0.160 1.681 sum 2.179 9.791 -5.646 11.510 Atomic orbital electron populations 1.21752 0.97096 1.00704 1.00452 1.21702 0.93835 0.98498 1.02110 1.18364 0.93462 0.91207 0.79834 0.96055 1.21949 0.92337 1.38357 1.05729 0.90881 1.25628 1.01926 0.94814 0.95534 1.69990 1.36491 1.38567 1.09955 0.85639 0.81049 0.77610 0.78149 1.18473 1.21220 1.21158 1.55305 1.86284 1.27666 1.17068 1.04424 0.77157 0.74183 0.73098 1.93501 1.85122 1.84948 1.35150 1.93525 1.56226 1.86258 1.62366 1.30502 1.21868 1.06233 1.14623 1.22465 0.98519 0.91786 1.01073 0.86637 1.23244 0.95923 0.97294 1.01271 1.23891 0.89518 0.94984 0.95643 1.88864 1.48641 1.60086 1.34209 1.23763 0.95467 0.96155 0.90523 0.94697 0.93435 0.92394 0.93415 0.90332 0.92725 0.75302 0.84643 0.82524 0.90285 0.86717 0.89910 0.87288 0.90253 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 9.85 71.98 0.71 -4.88 16 2 C -0.12 -5.38 5.38 30.59 0.16 -5.22 16 3 C 0.28 12.59 2.15 44.24 0.10 12.68 16 4 H 0.02 1.11 7.53 -2.39 -0.02 1.09 16 5 C -0.54 -25.88 8.23 25.60 0.21 -25.67 16 6 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 7 C 0.02 1.07 5.29 84.66 0.45 1.52 16 8 N -0.91 -48.45 11.28 21.45 0.24 -48.21 16 9 Si 0.95 39.68 29.54 68.60 2.03 41.70 16 10 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 11 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 13 N -1.10 -41.97 4.72 -172.52 -0.81 -42.79 16 14 S 2.62 93.62 5.21 -56.49 -0.29 93.33 16 15 O -1.00 -37.38 18.08 -127.65 -2.31 -39.69 16 16 O -0.99 -41.88 15.47 -127.65 -1.97 -43.86 16 17 C -0.60 -17.93 4.90 71.98 0.35 -17.57 16 18 C -0.12 -3.01 3.08 -9.80 -0.03 -3.04 16 19 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 20 C -0.14 -2.83 6.71 31.89 0.21 -2.62 16 21 C 0.04 0.73 7.72 72.66 0.56 1.29 16 22 O -0.40 -12.05 11.52 -148.98 -1.72 -13.77 16 23 C 0.02 0.53 6.82 72.36 0.49 1.03 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.76 7.64 -2.39 -0.02 1.74 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 3.93 5.94 -2.39 -0.01 3.91 16 29 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 30 H 0.41 14.02 8.81 -96.75 -0.85 13.17 16 31 H 0.14 4.59 7.85 -2.39 -0.02 4.57 16 32 H 0.16 3.94 8.14 -2.39 -0.02 3.92 16 33 H 0.08 1.77 7.87 -2.39 -0.02 1.75 16 34 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.85 5.91 -2.39 -0.01 2.84 16 Total: -1.00 -63.14 318.23 -1.42 -64.57 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.20 Total: 31.20 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 3.22 Total: -42.48 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -0.57 Total: -91.00 kcal Atomic # 8 Polarization: -91.32 SS G_CDS: -6.00 Total: -97.32 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.70 kcal Atomic # 16 Polarization: 93.62 SS G_CDS: -0.29 Total: 93.33 kcal Total: -63.14 -1.42 -64.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186425199.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.704 kcal (2) G-P(sol) polarization free energy of solvation -63.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds