Wall clock time and date at job start Mon Mar 30 2020 01:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47039 * 2 1 4 4 H 1.09000 * 109.47013 * 178.47559 * 3 2 1 5 5 C 1.50695 * 109.47113 * 298.47587 * 3 2 1 6 6 H 1.08004 * 120.00257 * 119.99961 * 5 3 2 7 7 C 1.37880 * 120.00003 * 300.00158 * 5 3 2 8 8 N 1.31509 * 119.99859 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99938 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47002 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47022 * 119.99706 * 9 7 5 12 12 H 1.48500 * 109.47088 * 239.99904 * 9 7 5 13 13 N 1.46500 * 109.46988 * 58.47378 * 3 2 1 14 14 S 1.65606 * 119.99866 * 96.38384 * 13 3 2 15 15 O 1.42098 * 104.27715 * 308.98506 * 14 13 3 16 16 O 1.42099 * 104.27638 * 181.12249 * 14 13 3 17 17 C 1.81399 * 104.44747 * 65.05365 * 14 13 3 18 18 C 1.53005 * 109.47167 * 180.02562 * 17 14 13 19 19 H 1.09000 * 110.74808 * 57.02137 * 18 17 14 20 20 C 1.55302 * 110.84699 * 180.71281 * 18 17 14 21 21 C 1.54947 * 100.94197 * 152.32473 * 20 18 17 22 22 O 1.43649 * 105.13318 * 323.55621 * 21 20 18 23 23 C 1.43238 * 109.97333 * 24.42729 * 22 21 20 24 24 H 1.09001 * 109.47429 * 295.72640 * 1 2 3 25 25 H 1.09001 * 109.47055 * 55.72106 * 1 2 3 26 26 H 1.08994 * 109.47253 * 175.72338 * 1 2 3 27 27 H 1.08990 * 109.47452 * 240.00166 * 2 1 3 28 28 H 1.08997 * 109.47151 * 119.99479 * 2 1 3 29 29 H 0.97006 * 119.99899 * 180.02562 * 8 7 5 30 30 H 0.97000 * 120.00665 * 276.38694 * 13 3 2 31 31 H 1.09001 * 109.47539 * 60.00126 * 17 14 13 32 32 H 1.09006 * 109.47108 * 300.00158 * 17 14 13 33 33 H 1.09003 * 111.12909 * 270.23942 * 20 18 17 34 34 H 1.09005 * 111.12862 * 34.40629 * 20 18 17 35 35 H 1.09005 * 110.31067 * 204.64251 * 21 20 18 36 36 H 1.09001 * 110.30994 * 82.46877 * 21 20 18 37 37 H 1.09003 * 109.83146 * 238.77897 * 23 22 21 38 38 H 1.08994 * 109.83156 * 117.80195 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1297 1.4427 0.0273 5 6 1.5688 2.1420 -1.2489 6 1 0.9456 3.0209 -1.1732 7 6 1.9331 1.6598 -2.4882 8 7 2.6922 0.5899 -2.5803 9 14 1.3483 2.5264 -4.0363 10 1 0.5137 3.6966 -3.6633 11 1 2.5230 2.9864 -4.8197 12 1 0.5440 1.5854 -4.8565 13 7 1.5218 2.1437 1.1774 14 16 2.4507 2.2675 2.5428 15 8 2.8682 0.9347 2.8046 16 8 1.6287 2.9720 3.4632 17 6 3.8623 3.2892 2.0387 18 6 4.8059 3.4780 3.2283 19 1 5.1353 2.5142 3.6166 20 6 6.0191 4.3647 2.8362 21 6 6.3779 4.9945 4.2057 22 8 5.1176 5.2142 4.8592 23 6 4.1322 4.3156 4.3363 24 1 -0.3634 0.4461 0.9258 25 1 -0.3633 0.5788 -0.8492 26 1 -0.3633 -1.0247 -0.0766 27 1 1.8933 -0.5137 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 2.9488 0.2510 -3.4523 30 1 0.6347 2.5354 1.1573 31 1 3.5046 4.2617 1.7004 32 1 4.3963 2.7959 1.2265 33 1 6.8413 3.7593 2.4548 34 1 5.7299 5.1299 2.1156 35 1 6.8995 5.9408 4.0619 36 1 6.9917 4.3079 4.7886 37 1 3.3004 4.8821 3.9175 38 1 3.7725 3.6595 5.1289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186425229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:29 Heat of formation + Delta-G solvation = -154.683199 kcal Electronic energy + Delta-G solvation = -20749.222782 eV Core-core repulsion = 17524.507731 eV Total energy + Delta-G solvation = -3224.715052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48748 -38.23047 -37.67610 -36.93307 -34.88299 -34.08065 -32.03928 -30.95640 -28.24350 -27.81495 -25.39111 -23.48384 -22.09781 -21.79381 -20.07803 -19.01798 -18.10001 -17.90291 -17.20322 -17.04431 -16.81696 -16.40536 -15.81500 -15.41136 -14.96072 -14.78198 -14.46729 -14.22263 -14.04778 -13.74981 -13.39664 -13.27943 -13.13905 -13.02539 -12.82965 -12.59569 -12.43939 -12.40542 -12.26264 -12.09641 -11.89843 -11.79279 -11.55110 -11.43927 -10.94023 -10.57572 -10.52305 -9.92886 -8.09017 -6.21781 -0.61388 1.45444 1.50514 1.58730 1.93241 2.46803 2.74431 2.87012 3.15329 3.21038 3.34334 3.53897 3.75158 4.05123 4.15352 4.25856 4.32203 4.49062 4.58117 4.68271 4.70065 4.78354 4.79439 4.88035 4.89765 4.92609 5.13162 5.25511 5.48087 5.61557 5.70290 5.73419 5.90976 6.11154 6.15642 6.47370 6.89120 7.47270 8.95680 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.005568 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.642649 B = 5027.113108 C = 5725.476018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.138 4.138 3 C 0.281 3.719 4 H 0.027 0.973 5 C -0.525 4.525 6 H 0.068 0.932 7 C 0.023 3.977 8 N -0.913 5.913 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.286 1.286 13 N -1.104 6.104 14 S 2.609 3.391 15 O -0.996 6.996 16 O -0.989 6.989 17 C -0.603 4.603 18 C -0.122 4.122 19 H 0.104 0.896 20 C -0.138 4.138 21 C 0.041 3.959 22 O -0.399 6.399 23 C 0.033 3.967 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.263 0.737 30 H 0.414 0.586 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.647 7.006 7.571 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.177 4.177 3 C 0.176 3.824 4 H 0.045 0.955 5 C -0.564 4.564 6 H 0.087 0.913 7 C -0.177 4.177 8 N -0.552 5.552 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.213 1.213 13 N -0.863 5.863 14 S 2.705 3.295 15 O -0.986 6.986 16 O -0.980 6.980 17 C -0.735 4.735 18 C -0.142 4.142 19 H 0.123 0.877 20 C -0.177 4.177 21 C -0.035 4.035 22 O -0.319 6.319 23 C -0.044 4.044 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.248 0.752 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.651 6.548 8.445 12.088 hybrid contribution -0.331 0.327 -1.668 1.732 sum 5.320 6.876 6.778 11.023 Atomic orbital electron populations 1.21485 0.96178 0.99667 1.00828 1.21909 0.96486 0.99219 1.00134 1.18312 0.92888 0.88846 0.82394 0.95524 1.21533 1.32167 1.12256 0.90492 0.91346 1.25555 0.95123 0.95453 1.01584 1.69989 1.36774 1.23390 1.25049 0.85590 0.78007 0.78680 0.79816 1.19034 1.20947 1.21269 1.55395 1.29090 1.70747 1.31036 1.04676 0.76411 0.75132 0.73303 1.93539 1.84307 1.36238 1.84491 1.93524 1.66270 1.75954 1.62246 1.30441 1.17204 1.17491 1.08350 1.22592 0.96723 1.01859 0.93011 0.87736 1.23357 0.96783 0.99131 0.98405 1.23684 0.85771 1.02339 0.91697 1.88379 1.20535 1.59331 1.63694 1.23573 0.92259 0.92687 0.95904 0.93725 0.92945 0.94211 0.90725 0.95509 0.92714 0.75169 0.82692 0.83466 0.87406 0.89057 0.87493 0.90667 0.90040 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.51 71.98 0.68 -4.44 16 2 C -0.14 -6.40 5.69 30.60 0.17 -6.23 16 3 C 0.28 12.59 2.36 44.25 0.10 12.70 16 4 H 0.03 1.25 7.17 -2.39 -0.02 1.24 16 5 C -0.52 -24.95 7.51 25.60 0.19 -24.76 16 6 H 0.07 3.15 7.81 -2.91 -0.02 3.12 16 7 C 0.02 1.14 5.30 84.66 0.45 1.59 16 8 N -0.91 -47.71 11.31 21.45 0.24 -47.46 16 9 Si 0.95 39.62 29.54 68.60 2.03 41.65 16 10 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 13 N -1.10 -41.37 4.64 -172.52 -0.80 -42.17 16 14 S 2.61 88.98 5.16 -56.49 -0.29 88.68 16 15 O -1.00 -40.88 17.27 -127.65 -2.21 -43.09 16 16 O -0.99 -35.89 16.83 -127.65 -2.15 -38.04 16 17 C -0.60 -15.72 5.33 71.98 0.38 -15.34 16 18 C -0.12 -2.84 3.03 -9.53 -0.03 -2.87 16 19 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 20 C -0.14 -2.48 6.62 32.05 0.21 -2.27 16 21 C 0.04 0.73 7.78 72.65 0.56 1.29 16 22 O -0.40 -10.16 11.36 -148.98 -1.69 -11.85 16 23 C 0.03 0.84 6.26 72.45 0.45 1.29 16 24 H 0.04 1.68 7.59 -2.39 -0.02 1.67 16 25 H 0.05 2.23 7.12 -2.39 -0.02 2.22 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 3.84 6.03 -2.39 -0.01 3.82 16 28 H 0.03 1.24 7.60 -2.39 -0.02 1.22 16 29 H 0.26 13.20 8.31 -92.70 -0.77 12.43 16 30 H 0.41 14.43 8.64 -96.75 -0.84 13.59 16 31 H 0.16 3.47 8.07 -2.39 -0.02 3.45 16 32 H 0.15 3.81 7.46 -2.39 -0.02 3.79 16 33 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.56 8.04 -2.38 -0.02 1.54 16 35 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 2.12 7.39 -2.39 -0.02 2.11 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -62.20 316.91 -1.46 -63.66 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.22 Total: 27.64 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 3.19 Total: -39.03 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -0.56 Total: -89.63 kcal Atomic # 8 Polarization: -86.93 SS G_CDS: -6.05 Total: -92.98 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Atomic # 16 Polarization: 88.98 SS G_CDS: -0.29 Total: 88.68 kcal Total: -62.20 -1.46 -63.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186425229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.021 kcal (2) G-P(sol) polarization free energy of solvation -62.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds