Wall clock time and date at job start Mon Mar 30 2020 01:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47501 * 2 1 4 4 H 1.08994 * 109.46865 * 304.24492 * 3 2 1 5 5 C 1.50705 * 109.47127 * 184.25033 * 3 2 1 6 6 H 1.08000 * 120.00083 * 245.49834 * 5 3 2 7 7 C 1.37876 * 119.99972 * 65.49040 * 5 3 2 8 8 N 1.31509 * 120.00192 * 9.40182 * 7 5 3 9 9 Si 1.86798 * 119.99853 * 189.39751 * 7 5 3 10 10 H 1.48498 * 109.47180 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47320 * 300.00266 * 9 7 5 12 12 H 1.48505 * 109.47254 * 60.00347 * 9 7 5 13 13 N 1.46500 * 109.47297 * 64.24888 * 3 2 1 14 14 S 1.65601 * 119.99816 * 215.40945 * 13 3 2 15 15 O 1.42095 * 104.27663 * 180.35779 * 14 13 3 16 16 O 1.42108 * 104.27775 * 308.20817 * 14 13 3 17 17 C 1.81395 * 104.45096 * 64.28034 * 14 13 3 18 18 C 1.53000 * 109.47362 * 186.09536 * 17 14 13 19 19 H 1.09007 * 110.75380 * 57.01550 * 18 17 14 20 20 C 1.55299 * 110.85474 * 180.71733 * 18 17 14 21 21 C 1.54936 * 100.94756 * 152.32221 * 20 18 17 22 22 O 1.43645 * 105.13686 * 323.55575 * 21 20 18 23 23 C 1.43245 * 109.97085 * 24.42681 * 22 21 20 24 24 H 1.08996 * 109.47441 * 184.52709 * 1 2 3 25 25 H 1.09004 * 109.47045 * 304.53581 * 1 2 3 26 26 H 1.09003 * 109.46694 * 64.52534 * 1 2 3 27 27 H 1.09003 * 109.47076 * 239.99091 * 2 1 3 28 28 H 1.09002 * 109.46675 * 120.00075 * 2 1 3 29 29 H 0.97004 * 119.99685 * 357.11136 * 8 7 5 30 30 H 0.96998 * 119.99733 * 35.40695 * 13 3 2 31 31 H 1.09002 * 109.47298 * 306.09144 * 17 14 13 32 32 H 1.09002 * 109.47201 * 66.09307 * 17 14 13 33 33 H 1.09004 * 111.12407 * 270.24399 * 20 18 17 34 34 H 1.09006 * 111.12266 * 34.39610 * 20 18 17 35 35 H 1.09002 * 110.31201 * 204.64313 * 21 20 18 36 36 H 1.08992 * 110.31253 * 82.47000 * 21 20 18 37 37 H 1.09006 * 109.82881 * 238.77689 * 23 22 21 38 38 H 1.08994 * 109.82973 * 117.80646 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6160 1.9777 -0.8495 5 6 3.5434 1.4436 -0.1053 6 1 4.1420 1.8108 0.7153 7 6 4.1548 0.9758 -1.2492 8 7 3.4345 0.7027 -2.3150 9 14 6.0062 0.7301 -1.2850 10 1 6.4125 0.2234 -2.6204 11 1 6.6827 2.0254 -1.0207 12 1 6.3953 -0.2534 -0.2425 13 7 1.6372 2.1029 1.2440 14 16 1.2308 3.7083 1.2351 15 8 0.9108 3.9963 2.5893 16 8 2.3263 4.3435 0.5903 17 6 -0.2548 3.7934 0.1978 18 6 -0.6456 5.2574 -0.0142 19 1 0.1780 5.8167 -0.4582 20 6 -1.9268 5.3671 -0.8851 21 6 -2.5127 6.7091 -0.3789 22 8 -2.2257 6.7366 1.0284 23 6 -1.0957 5.9037 1.3136 24 1 -0.3634 -1.0244 0.0811 25 1 -0.3633 0.5826 0.8466 26 1 -0.3633 0.4420 -0.9278 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.4689 0.7903 -2.2834 30 1 1.6084 1.5999 2.0729 31 1 -0.0516 3.3283 -0.7668 32 1 -1.0724 3.2668 0.6901 33 1 -1.6779 5.4219 -1.9449 34 1 -2.6090 4.5405 -0.6860 35 1 -3.5894 6.7389 -0.5460 36 1 -2.0279 7.5467 -0.8802 37 1 -1.3784 5.1280 2.0253 38 1 -0.2861 6.5069 1.7245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186425246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:31 Heat of formation + Delta-G solvation = -159.524089 kcal Electronic energy + Delta-G solvation = -20880.924545 eV Core-core repulsion = 17655.999577 eV Total energy + Delta-G solvation = -3224.924968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53339 -38.31420 -37.89247 -36.96395 -34.94388 -34.21664 -32.35533 -30.99579 -28.14543 -27.82201 -24.98756 -23.52901 -22.21680 -22.04209 -20.32720 -19.23500 -18.63164 -18.04123 -17.25363 -17.07279 -16.84850 -16.05855 -15.81814 -15.67002 -14.98771 -14.88774 -14.72784 -14.27871 -14.04855 -13.81687 -13.34886 -13.31805 -13.16142 -13.07434 -12.92968 -12.61099 -12.44937 -12.42723 -12.28901 -11.95223 -11.93947 -11.90195 -11.65597 -11.53216 -11.23428 -10.62049 -10.44467 -9.87635 -8.54299 -6.26635 -0.69619 1.55186 1.60702 1.80215 1.86661 2.58991 2.69749 2.82250 3.09045 3.19237 3.32707 3.46861 3.69648 3.98616 4.11255 4.21480 4.27174 4.29513 4.38010 4.46545 4.52650 4.62136 4.68265 4.74131 4.83246 4.89003 4.98119 5.09136 5.18499 5.22768 5.53180 5.58008 5.86426 6.05275 6.21094 6.41964 6.68384 7.44940 8.82741 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024653 B = 0.005398 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.489864 B = 5185.562747 C = 5310.481950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.270 3.730 4 H 0.024 0.976 5 C -0.618 4.618 6 H 0.037 0.963 7 C -0.018 4.018 8 N -0.929 5.929 9 Si 1.100 2.900 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.270 1.270 13 N -1.100 6.100 14 S 2.602 3.398 15 O -0.991 6.991 16 O -0.996 6.996 17 C -0.600 4.600 18 C -0.123 4.123 19 H 0.097 0.903 20 C -0.135 4.135 21 C 0.040 3.960 22 O -0.397 6.397 23 C 0.031 3.969 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.265 0.735 30 H 0.414 0.586 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 4.791 2.315 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.164 3.836 4 H 0.041 0.959 5 C -0.657 4.657 6 H 0.055 0.945 7 C -0.218 4.218 8 N -0.566 5.566 9 Si 0.923 3.077 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.859 5.859 14 S 2.698 3.302 15 O -0.982 6.982 16 O -0.986 6.986 17 C -0.732 4.732 18 C -0.143 4.143 19 H 0.116 0.884 20 C -0.174 4.174 21 C -0.036 4.036 22 O -0.317 6.317 23 C -0.046 4.046 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.248 0.752 31 H 0.167 0.833 32 H 0.184 0.816 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.765 5.238 1.793 13.002 hybrid contribution -1.095 -0.167 0.794 1.363 sum -12.860 5.070 2.586 14.064 Atomic orbital electron populations 1.21832 0.94651 1.02137 1.01893 1.21782 0.95994 0.97378 1.01198 1.18422 0.93391 0.91002 0.80800 0.95877 1.22627 0.93496 1.45274 1.04295 0.94468 1.26802 1.10069 0.93377 0.91598 1.70936 1.08104 1.48373 1.29225 0.83139 0.70963 0.77048 0.76511 1.20480 1.21211 1.19539 1.55219 1.83592 1.29848 1.17242 1.04878 0.77218 0.73300 0.74791 1.93519 1.86487 1.83992 1.34172 1.93577 1.50963 1.75695 1.78328 1.30429 1.20754 1.04324 1.17700 1.22577 1.01772 0.92134 0.97838 0.88448 1.23351 0.94163 0.98888 1.00964 1.23692 1.02523 0.97149 0.80221 1.88384 1.48523 1.68623 1.26171 1.23579 0.89598 0.94826 0.96600 0.91974 0.91584 0.92831 0.93139 0.92814 0.92437 0.75209 0.83345 0.81594 0.87580 0.88305 0.87129 0.91045 0.89568 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.85 71.98 0.71 -3.53 16 2 C -0.12 -4.83 5.24 30.59 0.16 -4.67 16 3 C 0.27 11.98 1.69 44.24 0.07 12.05 16 4 H 0.02 1.07 6.34 -2.39 -0.02 1.05 16 5 C -0.62 -33.59 8.76 25.60 0.22 -33.37 16 6 H 0.04 2.13 7.83 -2.91 -0.02 2.11 16 7 C -0.02 -1.01 5.17 84.66 0.44 -0.57 16 8 N -0.93 -52.59 13.04 21.45 0.28 -52.31 16 9 Si 1.10 50.21 29.91 68.60 2.05 52.26 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 N -1.10 -41.33 4.69 -172.53 -0.81 -42.13 16 14 S 2.60 93.13 5.07 -56.49 -0.29 92.85 16 15 O -0.99 -37.11 17.17 -127.65 -2.19 -39.30 16 16 O -1.00 -46.38 17.83 -127.65 -2.28 -48.66 16 17 C -0.60 -14.78 5.36 71.98 0.39 -14.40 16 18 C -0.12 -2.88 3.03 -9.53 -0.03 -2.91 16 19 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 20 C -0.14 -2.27 6.62 32.05 0.21 -2.06 16 21 C 0.04 0.69 7.78 72.64 0.56 1.26 16 22 O -0.40 -9.88 11.36 -148.98 -1.69 -11.58 16 23 C 0.03 0.79 6.46 72.45 0.47 1.25 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.62 7.61 -2.38 -0.02 1.60 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 2.25 6.39 -2.39 -0.02 2.24 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.27 14.51 6.07 -92.71 -0.56 13.95 16 30 H 0.41 13.88 8.80 -96.74 -0.85 13.03 16 31 H 0.15 3.54 7.25 -2.39 -0.02 3.52 16 32 H 0.17 3.00 8.07 -2.39 -0.02 2.98 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.41 8.04 -2.38 -0.02 1.39 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 2.13 7.44 -2.38 -0.02 2.11 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -72.22 319.30 -1.31 -73.53 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.41 Total: 22.29 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 3.21 Total: -46.94 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -0.53 Total: -94.44 kcal Atomic # 8 Polarization: -93.37 SS G_CDS: -6.16 Total: -99.53 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Atomic # 16 Polarization: 93.13 SS G_CDS: -0.29 Total: 92.85 kcal Total: -72.22 -1.31 -73.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186425246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.997 kcal (2) G-P(sol) polarization free energy of solvation -72.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds