Wall clock time and date at job start Mon Mar 30 2020 01:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46578 * 2 1 4 4 H 1.08997 * 109.47597 * 305.00099 * 3 2 1 5 5 C 1.50704 * 109.47269 * 184.99982 * 3 2 1 6 6 H 1.07990 * 119.99757 * 240.00271 * 5 3 2 7 7 C 1.37877 * 119.99796 * 60.00009 * 5 3 2 8 8 N 1.31509 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99763 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47055 * 90.00108 * 9 7 5 11 11 H 1.48498 * 109.46668 * 209.99884 * 9 7 5 12 12 H 1.48497 * 109.47280 * 329.99588 * 9 7 5 13 13 O 1.45199 * 109.47158 * 65.00107 * 3 2 1 14 14 C 1.34715 * 117.00094 * 269.99955 * 13 3 2 15 15 O 1.21471 * 119.99800 * 359.97438 * 14 13 3 16 16 C 1.47742 * 119.99916 * 179.72676 * 14 13 3 17 17 C 1.39756 * 120.07881 * 359.72091 * 16 14 13 18 18 C 1.38043 * 120.13549 * 179.74212 * 17 16 14 19 19 C 1.38110 * 120.30366 * 0.51605 * 18 17 16 20 20 C 1.39671 * 120.15236 * 359.76548 * 19 18 17 21 21 C 1.47866 * 120.06893 * 179.97438 * 20 19 18 22 22 N 1.34773 * 119.99868 * 0.02562 * 21 20 19 23 23 O 1.21548 * 119.99929 * 180.02562 * 21 20 19 24 24 C 1.39318 * 119.86089 * 359.97438 * 20 19 18 25 25 H 1.09003 * 109.46186 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47046 * 299.99354 * 1 2 3 27 27 H 1.08996 * 109.47256 * 60.00501 * 1 2 3 28 28 H 1.08997 * 109.47046 * 240.00645 * 2 1 3 29 29 H 1.08996 * 109.47256 * 119.99498 * 2 1 3 30 30 H 0.96999 * 119.99995 * 179.97438 * 8 7 5 31 31 H 1.07995 * 119.93020 * 0.02562 * 17 16 14 32 32 H 1.07998 * 119.84556 * 180.23660 * 18 17 16 33 33 H 1.08000 * 119.91911 * 179.73833 * 19 18 17 34 34 H 0.96999 * 120.00483 * 359.97438 * 22 21 20 35 35 H 0.97003 * 119.99687 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.15135 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1470 1.8891 0.6523 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3377 -2.1733 9 14 6.0050 0.8805 -1.3811 10 1 6.5539 -0.3515 -0.7598 11 1 6.3834 0.9220 -2.8165 12 1 6.5574 2.0725 -0.6890 13 8 1.6557 2.0917 1.2407 14 6 0.4683 2.7276 1.2561 15 8 -0.2270 2.7399 0.2601 16 6 0.0091 3.4054 2.4859 17 6 0.8028 3.3829 3.6361 18 6 0.3774 4.0203 4.7842 19 6 -0.8385 4.6749 4.8082 20 6 -1.6442 4.7003 3.6676 21 6 -2.9459 5.4012 3.6955 22 7 -3.3557 6.0169 4.8221 23 8 -3.6463 5.4220 2.7023 24 6 -1.2189 4.0637 2.5036 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8293 -0.0600 -2.9502 31 1 1.7529 2.8696 3.6251 32 1 0.9962 4.0032 5.6692 33 1 -1.1671 5.1680 5.7111 34 1 -2.7969 6.0000 5.6148 35 1 -4.2098 6.4764 4.8405 36 1 -1.8380 4.0807 1.6188 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188109179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:36 Heat of formation + Delta-G solvation = -108.667240 kcal Electronic energy + Delta-G solvation = -20934.585922 eV Core-core repulsion = 17576.422320 eV Total energy + Delta-G solvation = -3358.163601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41427 -39.49451 -38.01792 -35.77199 -34.11214 -33.52884 -31.58341 -31.19920 -31.03555 -27.32886 -24.48208 -24.22179 -22.94962 -21.34044 -20.52066 -19.51435 -18.49747 -17.20278 -16.71752 -16.55958 -16.17980 -15.50060 -15.34173 -14.90481 -14.70390 -14.46602 -14.14722 -13.88538 -13.11450 -12.84371 -12.73550 -12.11159 -12.02091 -11.59243 -11.45177 -11.23669 -11.19176 -10.98438 -10.65087 -10.30808 -10.29887 -9.99484 -9.83439 -9.69076 -9.38785 -9.17206 -9.16319 -8.82687 -8.46576 -6.19588 -4.27039 0.53405 0.95997 2.51163 3.15023 3.18509 3.23728 3.29500 3.32920 3.59710 3.89303 4.31087 4.51781 4.61852 4.71392 5.11952 5.12839 5.18709 5.34100 5.68244 5.75041 6.04717 6.15479 6.23878 6.28601 6.33031 6.45353 6.48575 6.62689 6.86680 6.96357 7.03254 7.16503 7.22328 7.59836 7.72323 7.91548 7.99740 8.13509 8.58428 8.85339 9.38094 10.87213 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030260 B = 0.003976 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.085139 B = 7040.278725 C = 7515.041492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.350 6.350 14 C 0.494 3.506 15 O -0.506 6.506 16 C -0.117 4.117 17 C -0.035 4.035 18 C -0.140 4.140 19 C -0.064 4.064 20 C -0.158 4.158 21 C 0.566 3.434 22 N -0.853 5.853 23 O -0.534 6.534 24 C -0.001 4.001 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.042 0.958 30 H 0.267 0.733 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.400 0.600 35 H 0.405 0.595 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 7.870 16.876 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.266 6.266 14 C 0.337 3.663 15 O -0.396 6.396 16 C -0.118 4.118 17 C -0.053 4.053 18 C -0.158 4.158 19 C -0.083 4.083 20 C -0.161 4.161 21 C 0.353 3.647 22 N -0.417 5.417 23 O -0.411 6.411 24 C -0.020 4.020 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.166 0.834 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.230 0.770 35 H 0.236 0.764 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.899 7.656 15.626 19.110 hybrid contribution 0.820 0.083 0.230 0.855 sum -7.080 7.739 15.856 19.011 Atomic orbital electron populations 1.21872 0.98331 0.99100 1.00830 1.22028 0.92669 0.99253 1.03411 1.20738 0.95070 0.88787 0.78455 0.93345 1.21022 0.89541 1.39123 1.06329 0.91294 1.24884 0.99250 0.94756 0.95035 1.69887 1.35407 1.37704 1.09444 0.86277 0.83858 0.78646 0.77378 1.20356 1.20972 1.19633 1.86510 1.33396 1.62355 1.44346 1.20829 0.81266 0.77052 0.87109 1.90804 1.55486 1.58282 1.35063 1.19456 0.96116 1.02446 0.93788 1.21863 0.99077 0.93420 0.90976 1.21108 0.96626 0.99296 0.98810 1.21440 0.93856 0.96324 0.96663 1.19711 0.96100 1.04729 0.95529 1.18212 0.85642 0.77940 0.82941 1.43722 1.25220 1.58279 1.14520 1.90852 1.56071 1.60282 1.33915 1.21414 0.93409 0.89527 0.97676 0.94741 0.94969 0.92720 0.87260 0.93927 0.92339 0.83394 0.84524 0.85349 0.77045 0.76423 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.56 37.16 0.32 -2.89 16 2 C -0.14 -3.36 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.85 2.25 -27.88 -0.06 5.79 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.39 8.90 -34.44 -0.31 -14.70 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.90 11.29 55.43 0.63 -24.27 16 9 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 O -0.35 -8.15 9.05 -40.53 -0.37 -8.51 16 14 C 0.49 10.51 6.35 34.62 0.22 10.73 16 15 O -0.51 -12.05 13.53 -19.24 -0.26 -12.31 16 16 C -0.12 -1.93 5.87 -105.03 -0.62 -2.55 16 17 C -0.04 -0.46 9.61 -39.09 -0.38 -0.84 16 18 C -0.14 -1.33 10.02 -39.70 -0.40 -1.72 16 19 C -0.06 -0.56 9.54 -39.09 -0.37 -0.93 16 20 C -0.16 -1.91 5.87 -105.02 -0.62 -2.53 16 21 C 0.57 6.82 8.05 -12.32 -0.10 6.72 16 22 N -0.85 -5.75 8.82 30.53 0.27 -5.48 16 23 O -0.53 -8.84 17.18 5.32 0.09 -8.75 16 24 C 0.00 -0.02 9.14 -38.77 -0.35 -0.37 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.69 6.06 -51.93 -0.31 0.38 16 27 H 0.05 1.28 7.79 -51.93 -0.40 0.87 16 28 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 31 H 0.15 1.91 7.60 -52.49 -0.40 1.51 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.13 0.57 6.39 -52.49 -0.34 0.23 16 34 H 0.40 1.40 6.85 -40.82 -0.28 1.12 16 35 H 0.40 2.19 8.93 -40.82 -0.36 1.83 16 36 H 0.15 2.59 7.23 -52.49 -0.38 2.21 16 LS Contribution 310.07 15.07 4.67 4.67 Total: -1.00 -33.46 310.07 -6.86 -40.32 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -3.97 Total: 3.73 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.90 Total: -5.17 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.90 Total: -29.76 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.54 Total: -29.57 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.46 -6.86 -40.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188109179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.342 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds