Wall clock time and date at job start Mon Mar 30 2020 01:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46578 * 2 1 4 4 H 1.08997 * 109.47597 * 305.00099 * 3 2 1 5 5 C 1.50704 * 109.47269 * 184.99982 * 3 2 1 6 6 H 1.07990 * 119.99757 * 240.00271 * 5 3 2 7 7 C 1.37877 * 119.99796 * 60.00009 * 5 3 2 8 8 N 1.31509 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99763 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47055 * 90.00108 * 9 7 5 11 11 H 1.48498 * 109.46668 * 209.99884 * 9 7 5 12 12 H 1.48497 * 109.47280 * 329.99588 * 9 7 5 13 13 O 1.45199 * 109.47158 * 65.00107 * 3 2 1 14 14 C 1.34715 * 117.00094 * 269.99955 * 13 3 2 15 15 O 1.21471 * 119.99800 * 359.97438 * 14 13 3 16 16 C 1.47742 * 119.99916 * 179.72676 * 14 13 3 17 17 C 1.39756 * 120.07881 * 359.72091 * 16 14 13 18 18 C 1.38043 * 120.13549 * 179.74212 * 17 16 14 19 19 C 1.38110 * 120.30366 * 0.51605 * 18 17 16 20 20 C 1.39671 * 120.15236 * 359.76548 * 19 18 17 21 21 C 1.47866 * 120.06893 * 179.97438 * 20 19 18 22 22 N 1.34773 * 119.99868 * 0.02562 * 21 20 19 23 23 O 1.21548 * 119.99929 * 180.02562 * 21 20 19 24 24 C 1.39318 * 119.86089 * 359.97438 * 20 19 18 25 25 H 1.09003 * 109.46186 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47046 * 299.99354 * 1 2 3 27 27 H 1.08996 * 109.47256 * 60.00501 * 1 2 3 28 28 H 1.08997 * 109.47046 * 240.00645 * 2 1 3 29 29 H 1.08996 * 109.47256 * 119.99498 * 2 1 3 30 30 H 0.96999 * 119.99995 * 179.97438 * 8 7 5 31 31 H 1.07995 * 119.93020 * 0.02562 * 17 16 14 32 32 H 1.07998 * 119.84556 * 180.23660 * 18 17 16 33 33 H 1.08000 * 119.91911 * 179.73833 * 19 18 17 34 34 H 0.96999 * 120.00483 * 359.97438 * 22 21 20 35 35 H 0.97003 * 119.99687 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.15135 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1470 1.8891 0.6523 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3377 -2.1733 9 14 6.0050 0.8805 -1.3811 10 1 6.5539 -0.3515 -0.7598 11 1 6.3834 0.9220 -2.8165 12 1 6.5574 2.0725 -0.6890 13 8 1.6557 2.0917 1.2407 14 6 0.4683 2.7276 1.2561 15 8 -0.2270 2.7399 0.2601 16 6 0.0091 3.4054 2.4859 17 6 0.8028 3.3829 3.6361 18 6 0.3774 4.0203 4.7842 19 6 -0.8385 4.6749 4.8082 20 6 -1.6442 4.7003 3.6676 21 6 -2.9459 5.4012 3.6955 22 7 -3.3557 6.0169 4.8221 23 8 -3.6463 5.4220 2.7023 24 6 -1.2189 4.0637 2.5036 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8293 -0.0600 -2.9502 31 1 1.7529 2.8696 3.6251 32 1 0.9962 4.0032 5.6692 33 1 -1.1671 5.1680 5.7111 34 1 -2.7969 6.0000 5.6148 35 1 -4.2098 6.4764 4.8405 36 1 -1.8380 4.0807 1.6188 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188109179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:35 Heat of formation + Delta-G solvation = -132.608190 kcal Electronic energy + Delta-G solvation = -20935.624079 eV Core-core repulsion = 17576.422320 eV Total energy + Delta-G solvation = -3359.201759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69032 -40.88248 -39.13597 -37.60794 -35.54083 -34.96981 -33.43482 -32.26105 -32.17723 -29.35102 -25.94522 -25.30619 -24.71502 -22.52815 -22.01492 -21.13215 -19.63029 -18.73203 -18.26939 -17.88340 -17.23802 -17.13306 -16.97458 -16.40336 -15.90775 -15.61039 -15.29134 -14.86637 -14.81224 -14.74258 -14.19975 -13.55425 -13.39590 -13.35024 -13.13087 -12.98993 -12.83234 -12.59749 -12.45132 -12.14664 -11.80015 -11.54280 -11.37645 -11.26738 -10.85676 -10.78573 -10.54348 -10.19442 -10.12796 -8.27636 -6.45133 -0.47903 -0.11264 1.40087 1.42469 1.44834 1.55618 1.87765 1.91861 2.38433 2.49732 2.77827 3.02206 3.68111 3.75529 3.80902 4.00640 4.08560 4.31144 4.34879 4.35833 4.48828 4.62743 4.80268 4.83014 5.02429 5.08186 5.17801 5.21376 5.24992 5.35348 5.49968 5.64059 5.67842 5.84725 5.93243 6.07503 6.38764 6.59244 6.91450 7.25607 7.26014 8.79487 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.030260 B = 0.003976 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.085139 B = 7040.278725 C = 7515.041492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.984 3.016 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.264 1.264 13 O -0.351 6.351 14 C 0.488 3.512 15 O -0.546 6.546 16 C -0.146 4.146 17 C -0.038 4.038 18 C -0.120 4.120 19 C -0.030 4.030 20 C -0.161 4.161 21 C 0.564 3.436 22 N -0.820 5.820 23 O -0.592 6.592 24 C -0.021 4.021 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.270 0.730 31 H 0.147 0.853 32 H 0.187 0.813 33 H 0.189 0.811 34 H 0.421 0.579 35 H 0.415 0.585 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 8.820 21.165 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.807 3.193 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.188 1.188 13 O -0.268 6.268 14 C 0.334 3.666 15 O -0.438 6.438 16 C -0.148 4.148 17 C -0.056 4.056 18 C -0.137 4.137 19 C -0.048 4.048 20 C -0.165 4.165 21 C 0.350 3.650 22 N -0.385 5.385 23 O -0.474 6.474 24 C -0.040 4.040 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.165 0.835 32 H 0.204 0.796 33 H 0.206 0.794 34 H 0.254 0.746 35 H 0.248 0.752 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.962 8.631 19.999 22.867 hybrid contribution 0.434 -0.113 -0.971 1.070 sum -6.527 8.517 19.027 21.845 Atomic orbital electron populations 1.21725 0.96665 1.00605 0.99851 1.21871 0.94098 0.98057 1.02611 1.20443 0.94815 0.89257 0.78371 0.97878 1.21318 0.90128 1.40078 1.07096 0.91167 1.25848 1.04432 0.93830 0.94273 1.70023 1.37566 1.37907 1.09881 0.85164 0.77413 0.79222 0.77504 1.19019 1.20550 1.18839 1.86486 1.34817 1.62869 1.42598 1.21795 0.79982 0.76203 0.88589 1.90771 1.56216 1.59792 1.37057 1.19176 0.97719 1.04896 0.92964 1.22001 0.98586 0.93958 0.91079 1.21625 0.96921 0.96661 0.98510 1.22062 0.92185 0.93727 0.96847 1.19816 0.96852 1.04324 0.95476 1.18280 0.85243 0.78052 0.83425 1.43443 1.25636 1.55998 1.13465 1.90838 1.57574 1.62607 1.36341 1.21202 0.93055 0.91431 0.98359 0.91778 0.94837 0.94844 0.89377 0.93097 0.92029 0.83530 0.79579 0.79381 0.74570 0.75187 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 8.56 71.98 0.62 -5.48 16 2 C -0.13 -6.64 5.49 30.60 0.17 -6.47 16 3 C 0.22 12.53 2.25 29.85 0.07 12.60 16 4 H 0.00 0.22 7.16 -2.39 -0.02 0.20 16 5 C -0.55 -31.25 8.90 25.60 0.23 -31.03 16 6 H 0.07 3.87 7.81 -2.92 -0.02 3.84 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -53.09 11.29 21.45 0.24 -52.85 16 9 Si 0.98 42.81 29.54 68.60 2.03 44.84 16 10 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 13 O -0.35 -17.27 9.05 -56.24 -0.51 -17.78 16 14 C 0.49 22.29 6.35 70.34 0.45 22.73 16 15 O -0.55 -28.52 13.53 19.93 0.27 -28.25 16 16 C -0.15 -5.01 5.87 -20.13 -0.12 -5.13 16 17 C -0.04 -0.93 9.61 22.59 0.22 -0.71 16 18 C -0.12 -1.63 10.02 22.19 0.22 -1.41 16 19 C -0.03 -0.36 9.54 22.59 0.22 -0.14 16 20 C -0.16 -3.61 5.87 -20.12 -0.12 -3.73 16 21 C 0.56 12.69 8.05 86.79 0.70 13.38 16 22 N -0.82 -7.87 8.82 -175.60 -1.55 -9.42 16 23 O -0.59 -20.13 17.18 -3.87 -0.07 -20.20 16 24 C -0.02 -0.68 9.14 22.80 0.21 -0.47 16 25 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.03 1.51 6.06 -2.39 -0.01 1.50 16 27 H 0.03 1.66 7.79 -2.39 -0.02 1.64 16 28 H 0.09 4.95 5.95 -2.39 -0.01 4.93 16 29 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 31 H 0.15 3.61 7.60 -2.91 -0.02 3.58 16 32 H 0.19 0.88 8.06 -2.91 -0.02 0.85 16 33 H 0.19 0.04 6.39 -2.91 -0.02 0.02 16 34 H 0.42 0.41 6.85 -92.71 -0.64 -0.23 16 35 H 0.42 3.07 8.93 -92.71 -0.83 2.25 16 36 H 0.11 4.45 7.23 -2.91 -0.02 4.43 16 Total: -1.00 -81.56 310.07 3.39 -78.17 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -0.32 Total: 10.02 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 3.30 Total: -4.54 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -1.31 Total: -62.27 kcal Atomic # 8 Polarization: -65.92 SS G_CDS: -0.31 Total: -66.22 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -81.56 3.39 -78.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188109179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.434 kcal (2) G-P(sol) polarization free energy of solvation -81.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds