Wall clock time and date at job start Mon Mar 30 2020 01:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46819 * 2 1 4 4 H 1.09008 * 109.46840 * 304.99601 * 3 2 1 5 5 C 1.50703 * 109.46958 * 185.00565 * 3 2 1 6 6 H 1.08001 * 119.99521 * 240.00049 * 5 3 2 7 7 C 1.37874 * 120.00359 * 59.99489 * 5 3 2 8 8 N 1.31508 * 120.00030 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99753 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47203 * 60.00252 * 9 7 5 11 11 H 1.48507 * 109.46906 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47194 * 299.99722 * 9 7 5 13 13 O 1.45194 * 109.47677 * 64.99734 * 3 2 1 14 14 C 1.34684 * 117.00182 * 270.00395 * 13 3 2 15 15 O 1.21443 * 120.00244 * 359.97438 * 14 13 3 16 16 C 1.47935 * 119.99835 * 180.02562 * 14 13 3 17 17 C 1.39603 * 120.00205 * 180.02562 * 16 14 13 18 18 C 1.37813 * 119.99324 * 180.27355 * 17 16 14 19 19 C 1.39558 * 120.00086 * 359.51263 * 18 17 16 20 20 C 1.48050 * 119.99466 * 180.21048 * 19 18 17 21 21 N 1.34778 * 119.99592 * 0.25077 * 20 19 18 22 22 O 1.21523 * 120.00444 * 180.24777 * 20 19 18 23 23 C 1.39559 * 120.01494 * 0.45925 * 19 18 17 24 24 C 1.37815 * 120.00138 * 359.80002 * 23 19 18 25 25 H 1.09004 * 109.47518 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47691 * 299.99978 * 1 2 3 27 27 H 1.09003 * 109.47674 * 60.00686 * 1 2 3 28 28 H 1.09001 * 109.47030 * 239.99764 * 2 1 3 29 29 H 1.08999 * 109.47165 * 119.99851 * 2 1 3 30 30 H 0.97000 * 120.00050 * 180.02562 * 8 7 5 31 31 H 1.08002 * 120.00205 * 359.97438 * 17 16 14 32 32 H 1.07998 * 120.00138 * 179.72080 * 18 17 16 33 33 H 0.97000 * 120.00141 * 359.97438 * 21 20 19 34 34 H 0.97002 * 119.99884 * 179.97438 * 21 20 19 35 35 H 1.07992 * 119.99704 * 179.76784 * 23 19 18 36 36 H 1.07998 * 120.00268 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1240 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1454 -0.2343 11 1 6.3978 0.2157 -2.6499 12 1 6.5002 2.2800 -1.3810 13 8 1.6557 2.0918 1.2406 14 6 0.4685 2.7276 1.2559 15 8 -0.2266 2.7399 0.2602 16 6 0.0119 3.4121 2.4853 17 6 -1.2189 4.0707 2.5014 18 6 -1.6416 4.7130 3.6450 19 6 -0.8440 4.6964 4.7901 20 6 -1.3003 5.3826 6.0200 21 7 -2.4884 6.0189 6.0353 22 8 -0.6039 5.3721 7.0158 23 6 0.3862 4.0376 4.7744 24 6 0.8117 3.3996 3.6293 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0610 -2.9499 31 1 -1.8376 4.0809 1.6162 32 1 -2.5917 5.2264 3.6563 33 1 -3.0442 6.0276 5.2404 34 1 -2.7876 6.4682 6.8413 35 1 1.0049 4.0281 5.6595 36 1 1.7639 2.8901 3.6170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188118255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:40 Heat of formation + Delta-G solvation = -109.120380 kcal Electronic energy + Delta-G solvation = -20799.492852 eV Core-core repulsion = 17441.309601 eV Total energy + Delta-G solvation = -3358.183251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43734 -39.60712 -38.02977 -35.81289 -34.18713 -33.56143 -31.62975 -31.16019 -31.04094 -27.38861 -25.30667 -23.28906 -22.67610 -21.72374 -20.50774 -19.59066 -18.54811 -17.45665 -17.15485 -16.57330 -15.84182 -15.38567 -15.26817 -14.98371 -14.74231 -14.48831 -14.15189 -13.65066 -13.19914 -12.89237 -12.81870 -12.49481 -12.03924 -11.54024 -11.40649 -11.23275 -11.18683 -10.97319 -10.69908 -10.38344 -10.32569 -10.05417 -9.88124 -9.74223 -9.42956 -9.18576 -9.14429 -8.86146 -8.48580 -6.21564 -4.29038 0.33017 1.20647 2.37532 3.16230 3.17359 3.24918 3.28260 3.29835 3.49470 3.86184 4.29862 4.50404 4.58873 4.78106 5.10199 5.13121 5.19257 5.40378 5.62782 5.84655 6.01269 6.13274 6.19469 6.25268 6.31391 6.42368 6.43432 6.63029 6.82388 6.91356 6.97638 7.12126 7.17606 7.57133 7.69001 7.87543 7.91852 8.10764 8.53572 8.82317 9.36251 10.85172 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029110 B = 0.003817 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.651166 B = 7334.409157 C = 7949.437841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.348 6.348 14 C 0.492 3.508 15 O -0.507 6.507 16 C -0.082 4.082 17 C -0.071 4.071 18 C -0.100 4.100 19 C -0.122 4.122 20 C 0.565 3.435 21 N -0.851 5.851 22 O -0.538 6.538 23 C -0.072 4.072 24 C -0.071 4.071 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.110 0.890 29 H 0.043 0.957 30 H 0.267 0.733 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.402 0.598 34 H 0.405 0.595 35 H 0.143 0.857 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 7.990 11.361 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.264 6.264 14 C 0.335 3.665 15 O -0.398 6.398 16 C -0.083 4.083 17 C -0.089 4.089 18 C -0.119 4.119 19 C -0.125 4.125 20 C 0.351 3.649 21 N -0.415 5.415 22 O -0.415 6.415 23 C -0.091 4.091 24 C -0.089 4.089 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.232 0.768 34 H 0.236 0.764 35 H 0.161 0.839 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.805 7.750 11.394 17.511 hybrid contribution 0.376 0.106 -0.400 0.559 sum -10.429 7.856 10.994 17.070 Atomic orbital electron populations 1.21866 0.98375 0.99111 1.00711 1.22032 0.92643 0.99259 1.03492 1.20740 0.95108 0.88780 0.78353 0.93367 1.20995 0.89544 1.39229 1.06363 0.91293 1.24876 0.99283 0.94686 0.95015 1.69873 1.35525 1.37663 1.09467 0.86331 0.83783 0.78520 0.77502 1.19896 1.21030 1.19962 1.86524 1.33310 1.62179 1.44370 1.20963 0.81285 0.77074 0.87140 1.90775 1.55515 1.58477 1.35061 1.19734 0.95726 0.99613 0.93268 1.21234 0.94698 0.94390 0.98567 1.21142 0.99339 0.99371 0.92053 1.20045 0.96949 1.01772 0.93769 1.18355 0.81034 0.77870 0.87675 1.43759 1.21368 1.57701 1.18721 1.90817 1.54924 1.60594 1.35158 1.21281 0.94550 0.94560 0.98664 1.21635 1.00028 0.96233 0.90974 0.94725 0.95001 0.92776 0.87228 0.93862 0.92277 0.83817 0.85051 0.76832 0.76420 0.83927 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.56 37.16 0.32 -2.76 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.77 2.25 -27.88 -0.06 5.71 16 4 H 0.05 1.38 7.16 -51.92 -0.37 1.01 16 5 C -0.52 -14.33 8.90 -34.44 -0.31 -14.64 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.65 11.29 55.43 0.63 -24.02 16 9 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 O -0.35 -7.98 9.05 -40.45 -0.37 -8.35 16 14 C 0.49 10.00 6.35 34.70 0.22 10.22 16 15 O -0.51 -11.28 13.52 -19.22 -0.26 -11.54 16 16 C -0.08 -1.29 5.88 -104.91 -0.62 -1.90 16 17 C -0.07 -0.89 9.58 -39.23 -0.38 -1.27 16 18 C -0.10 -0.97 9.53 -39.24 -0.37 -1.35 16 19 C -0.12 -1.37 5.88 -104.89 -0.62 -1.98 16 20 C 0.56 6.15 8.05 -12.24 -0.10 6.06 16 21 N -0.85 -5.36 8.82 30.58 0.27 -5.09 16 22 O -0.54 -7.89 17.17 5.35 0.09 -7.80 16 23 C -0.07 -0.89 9.58 -39.24 -0.38 -1.27 16 24 C -0.07 -0.99 9.60 -39.23 -0.38 -1.37 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.66 6.06 -51.93 -0.31 0.34 16 27 H 0.05 1.21 7.79 -51.93 -0.40 0.81 16 28 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 29 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.14 1.73 7.64 -52.49 -0.40 1.33 16 32 H 0.13 0.73 6.39 -52.49 -0.34 0.40 16 33 H 0.40 1.43 6.85 -40.82 -0.28 1.15 16 34 H 0.40 1.97 8.93 -40.82 -0.36 1.61 16 35 H 0.14 1.67 7.64 -52.49 -0.40 1.27 16 36 H 0.15 2.10 7.60 -52.49 -0.40 1.70 16 LS Contribution 310.06 15.07 4.67 4.67 Total: -1.00 -32.28 310.06 -6.86 -39.14 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.97 Total: 3.67 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -2.91 Total: -6.40 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 0.90 Total: -29.12 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.53 Total: -27.69 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.28 -6.86 -39.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188118255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.978 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds