Wall clock time and date at job start Mon Mar 30 2020 01:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46819 * 2 1 4 4 H 1.09008 * 109.46840 * 304.99601 * 3 2 1 5 5 C 1.50703 * 109.46958 * 185.00565 * 3 2 1 6 6 H 1.08001 * 119.99521 * 240.00049 * 5 3 2 7 7 C 1.37874 * 120.00359 * 59.99489 * 5 3 2 8 8 N 1.31508 * 120.00030 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99753 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47203 * 60.00252 * 9 7 5 11 11 H 1.48507 * 109.46906 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47194 * 299.99722 * 9 7 5 13 13 O 1.45194 * 109.47677 * 64.99734 * 3 2 1 14 14 C 1.34684 * 117.00182 * 270.00395 * 13 3 2 15 15 O 1.21443 * 120.00244 * 359.97438 * 14 13 3 16 16 C 1.47935 * 119.99835 * 180.02562 * 14 13 3 17 17 C 1.39603 * 120.00205 * 180.02562 * 16 14 13 18 18 C 1.37813 * 119.99324 * 180.27355 * 17 16 14 19 19 C 1.39558 * 120.00086 * 359.51263 * 18 17 16 20 20 C 1.48050 * 119.99466 * 180.21048 * 19 18 17 21 21 N 1.34778 * 119.99592 * 0.25077 * 20 19 18 22 22 O 1.21523 * 120.00444 * 180.24777 * 20 19 18 23 23 C 1.39559 * 120.01494 * 0.45925 * 19 18 17 24 24 C 1.37815 * 120.00138 * 359.80002 * 23 19 18 25 25 H 1.09004 * 109.47518 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47691 * 299.99978 * 1 2 3 27 27 H 1.09003 * 109.47674 * 60.00686 * 1 2 3 28 28 H 1.09001 * 109.47030 * 239.99764 * 2 1 3 29 29 H 1.08999 * 109.47165 * 119.99851 * 2 1 3 30 30 H 0.97000 * 120.00050 * 180.02562 * 8 7 5 31 31 H 1.08002 * 120.00205 * 359.97438 * 17 16 14 32 32 H 1.07998 * 120.00138 * 179.72080 * 18 17 16 33 33 H 0.97000 * 120.00141 * 359.97438 * 21 20 19 34 34 H 0.97002 * 119.99884 * 179.97438 * 21 20 19 35 35 H 1.07992 * 119.99704 * 179.76784 * 23 19 18 36 36 H 1.07998 * 120.00268 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1240 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1454 -0.2343 11 1 6.3978 0.2157 -2.6499 12 1 6.5002 2.2800 -1.3810 13 8 1.6557 2.0918 1.2406 14 6 0.4685 2.7276 1.2559 15 8 -0.2266 2.7399 0.2602 16 6 0.0119 3.4121 2.4853 17 6 -1.2189 4.0707 2.5014 18 6 -1.6416 4.7130 3.6450 19 6 -0.8440 4.6964 4.7901 20 6 -1.3003 5.3826 6.0200 21 7 -2.4884 6.0189 6.0353 22 8 -0.6039 5.3721 7.0158 23 6 0.3862 4.0376 4.7744 24 6 0.8117 3.3996 3.6293 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0610 -2.9499 31 1 -1.8376 4.0809 1.6162 32 1 -2.5917 5.2264 3.6563 33 1 -3.0442 6.0276 5.2404 34 1 -2.7876 6.4682 6.8413 35 1 1.0049 4.0281 5.6595 36 1 1.7639 2.8901 3.6170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188118255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:39 Heat of formation + Delta-G solvation = -130.875567 kcal Electronic energy + Delta-G solvation = -20800.436228 eV Core-core repulsion = 17441.309601 eV Total energy + Delta-G solvation = -3359.126627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.66998 -40.90812 -39.14365 -37.57520 -35.53922 -34.95148 -33.42228 -32.36702 -32.05545 -29.34891 -26.56782 -25.12046 -23.72371 -23.03628 -21.88357 -21.18677 -19.53050 -18.92870 -18.55417 -17.85507 -17.52395 -17.09416 -16.52746 -16.17019 -15.88422 -15.61611 -15.32414 -14.85789 -14.77628 -14.52225 -14.20097 -13.72133 -13.49524 -13.36170 -13.25840 -13.12779 -12.80867 -12.56331 -12.22077 -12.15028 -11.77639 -11.54224 -11.37679 -11.26433 -10.84382 -10.76323 -10.53715 -10.20083 -10.14384 -8.27853 -6.44647 -0.74901 0.24354 1.22535 1.42005 1.45352 1.53099 1.92272 1.97544 2.40183 2.43314 2.76720 3.01963 3.61073 3.76930 3.82035 3.88855 4.17131 4.30385 4.37161 4.39022 4.52562 4.59906 4.81069 4.90347 5.01213 5.07886 5.13215 5.20202 5.25422 5.37378 5.50356 5.61985 5.65915 5.85039 5.94202 6.09195 6.36440 6.58793 6.91944 7.23670 7.26340 8.78732 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029110 B = 0.003817 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.651166 B = 7334.409157 C = 7949.437841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.979 3.021 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.269 1.269 13 O -0.357 6.357 14 C 0.487 3.513 15 O -0.534 6.534 16 C -0.108 4.108 17 C -0.068 4.068 18 C -0.075 4.075 19 C -0.115 4.115 20 C 0.565 3.435 21 N -0.824 5.824 22 O -0.580 6.580 23 C -0.075 4.075 24 C -0.075 4.075 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.271 0.729 31 H 0.151 0.849 32 H 0.184 0.816 33 H 0.419 0.581 34 H 0.416 0.584 35 H 0.147 0.853 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 9.061 12.721 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.173 3.827 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.194 1.194 13 O -0.273 6.273 14 C 0.333 3.667 15 O -0.426 6.426 16 C -0.110 4.110 17 C -0.086 4.086 18 C -0.093 4.093 19 C -0.118 4.118 20 C 0.350 3.650 21 N -0.389 5.389 22 O -0.461 6.461 23 C -0.094 4.094 24 C -0.093 4.093 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.168 0.832 32 H 0.201 0.799 33 H 0.252 0.748 34 H 0.249 0.751 35 H 0.165 0.835 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.148 8.846 12.754 19.711 hybrid contribution 0.638 -0.127 -0.759 1.000 sum -11.509 8.719 11.996 18.772 Atomic orbital electron populations 1.21715 0.96202 1.00690 1.00119 1.21879 0.94558 0.98005 1.02409 1.20422 0.94571 0.89321 0.78378 0.97233 1.21300 0.90497 1.40168 1.06998 0.91605 1.25768 1.04137 0.93837 0.94334 1.69994 1.37481 1.37784 1.09826 0.85285 0.77795 0.78757 0.77896 1.18945 1.20189 1.19445 1.86507 1.35180 1.62866 1.42750 1.21797 0.79980 0.76319 0.88569 1.90746 1.55849 1.59509 1.36486 1.19583 0.97847 1.01921 0.91621 1.21403 0.93363 0.93879 0.99960 1.21545 1.00508 0.97486 0.89808 1.20256 0.96375 1.00625 0.94584 1.18275 0.81901 0.78059 0.86723 1.43554 1.19692 1.55636 1.19988 1.90814 1.56512 1.62389 1.36397 1.21326 0.95489 0.94585 0.98022 1.21516 0.99717 0.96839 0.91203 0.91942 0.94576 0.94299 0.89405 0.93606 0.91976 0.83178 0.79924 0.74813 0.75101 0.83528 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.56 71.98 0.62 -5.04 16 2 C -0.13 -6.55 5.49 30.59 0.17 -6.39 16 3 C 0.23 12.28 2.25 29.85 0.07 12.35 16 4 H 0.01 0.60 7.16 -2.38 -0.02 0.58 16 5 C -0.55 -31.26 8.90 25.60 0.23 -31.04 16 6 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -51.94 11.29 21.45 0.24 -51.69 16 9 Si 0.98 42.78 29.54 68.60 2.03 44.81 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 O -0.36 -17.12 9.05 -55.93 -0.51 -17.63 16 14 C 0.49 20.50 6.35 70.39 0.45 20.95 16 15 O -0.53 -24.58 13.52 20.02 0.27 -24.31 16 16 C -0.11 -3.40 5.88 -20.05 -0.12 -3.52 16 17 C -0.07 -1.58 9.58 22.50 0.22 -1.36 16 18 C -0.08 -1.17 9.53 22.49 0.21 -0.95 16 19 C -0.12 -2.25 5.88 -20.04 -0.12 -2.37 16 20 C 0.56 10.59 8.05 86.85 0.70 11.29 16 21 N -0.82 -6.86 8.82 -175.47 -1.55 -8.41 16 22 O -0.58 -16.02 17.17 -3.79 -0.07 -16.08 16 23 C -0.08 -1.80 9.58 22.49 0.22 -1.58 16 24 C -0.07 -2.10 9.60 22.50 0.22 -1.89 16 25 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.04 1.51 6.06 -2.39 -0.01 1.49 16 27 H 0.04 1.78 7.79 -2.39 -0.02 1.76 16 28 H 0.09 4.81 5.95 -2.39 -0.01 4.79 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.15 3.32 7.64 -2.91 -0.02 3.30 16 32 H 0.18 0.90 6.39 -2.91 -0.02 0.89 16 33 H 0.42 0.70 6.85 -92.71 -0.64 0.06 16 34 H 0.42 2.39 8.93 -92.71 -0.83 1.57 16 35 H 0.15 3.36 7.64 -2.91 -0.02 3.33 16 36 H 0.14 4.13 7.60 -2.91 -0.02 4.11 16 Total: -1.00 -73.23 310.06 3.40 -69.83 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -0.32 Total: 11.53 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 3.30 Total: -8.05 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -1.31 Total: -60.10 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: -0.30 Total: -58.02 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -73.23 3.40 -69.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188118255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.045 kcal (2) G-P(sol) polarization free energy of solvation -73.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds