Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47279 * 2 1 4 4 H 1.09003 * 109.47608 * 54.99441 * 3 2 1 5 5 C 1.53001 * 109.47026 * 295.00117 * 3 2 1 6 6 C 1.53000 * 109.47594 * 174.99763 * 3 2 1 7 7 S 1.81395 * 109.47296 * 184.99660 * 6 3 2 8 8 O 1.42105 * 110.54149 * 68.38083 * 7 6 3 9 9 O 1.42102 * 110.54569 * 291.62484 * 7 6 3 10 10 N 1.65606 * 104.44852 * 179.97438 * 7 6 3 11 11 C 1.47586 * 134.48958 * 90.00077 * 10 7 6 12 12 C 1.53949 * 86.11504 * 155.35964 * 11 10 7 13 13 O 1.42903 * 113.74102 * 269.15490 * 12 11 10 14 14 C 1.50694 * 113.74088 * 137.95266 * 12 11 10 15 15 H 1.08000 * 120.00563 * 1.92388 * 14 12 11 16 16 C 1.37885 * 119.99902 * 181.92552 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47807 * 134.45609 * 269.87090 * 10 7 6 23 23 H 1.08997 * 109.46888 * 60.00176 * 1 2 3 24 24 H 1.09004 * 109.47221 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47212 * 299.99875 * 1 2 3 26 26 H 1.09001 * 109.47267 * 239.99408 * 2 1 3 27 27 H 1.08997 * 109.46888 * 119.99824 * 2 1 3 28 28 H 1.08995 * 109.47558 * 180.02562 * 5 3 2 29 29 H 1.09005 * 109.46727 * 299.99686 * 5 3 2 30 30 H 1.08995 * 109.47578 * 59.99725 * 5 3 2 31 31 H 1.08998 * 109.46555 * 64.99574 * 6 3 2 32 32 H 1.08999 * 109.47164 * 305.00007 * 6 3 2 33 33 H 1.08993 * 113.76952 * 41.05751 * 11 10 7 34 34 H 1.08995 * 113.86700 * 269.67100 * 11 10 7 35 35 H 0.96700 * 113.99800 * 178.07503 * 13 12 11 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08995 * 113.77163 * 90.38156 * 22 10 7 38 38 H 1.09005 * 113.83876 * 318.91142 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1264 -1.3073 6 6 3.5649 1.4443 0.1258 7 16 4.1572 3.1524 0.2743 8 8 3.7570 3.7126 1.5175 9 8 3.9598 3.8565 -0.9441 10 7 5.8021 3.0096 0.4023 11 6 6.9162 2.9815 -0.5653 12 6 7.7982 3.4778 0.5948 13 8 7.8848 4.9014 0.6833 14 6 9.1430 2.8017 0.6668 15 1 9.4190 2.0679 -0.0760 16 6 10.0212 3.1200 1.6810 17 7 9.6853 4.0139 2.5853 18 14 11.6880 2.2814 1.7706 19 1 12.4384 2.7956 2.9444 20 1 11.4976 0.8151 1.9079 21 1 12.4532 2.5673 0.5305 22 6 6.7436 2.8616 1.5321 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.9990 3.1539 -1.3076 29 1 2.0700 1.5874 -2.1492 30 1 0.5490 2.1252 -1.3970 31 1 4.0029 0.9835 -0.7596 32 1 3.8571 0.8801 1.0114 33 1 6.8116 3.7015 -1.3768 34 1 7.1718 1.9811 -0.9146 35 1 8.4140 5.2177 1.4284 36 1 10.3030 4.2375 3.2990 37 1 6.9473 1.8252 1.8014 38 1 6.5016 3.4862 2.3920 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189065381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = -102.885070 kcal Electronic energy + Delta-G solvation = -20532.264737 eV Core-core repulsion = 17309.795821 eV Total energy + Delta-G solvation = -3222.468916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.43260 -37.18059 -36.59695 -35.46156 -33.86487 -32.16141 -30.90380 -27.96256 -27.36036 -25.27248 -24.62916 -23.90680 -20.33458 -19.57100 -18.16987 -17.48952 -16.81124 -16.17867 -15.76595 -15.20951 -15.01674 -14.81152 -14.17156 -13.82983 -13.56147 -13.29434 -13.10090 -12.96536 -12.36551 -12.24134 -12.11530 -11.74898 -11.66537 -11.60377 -11.56709 -11.44853 -11.25944 -11.07932 -10.99882 -10.80279 -10.80039 -10.52031 -10.23775 -10.16487 -9.27338 -8.73223 -8.53460 -8.01288 -6.33693 -4.44763 0.65488 3.11192 3.18021 3.24528 3.26498 4.18659 4.20951 4.35949 4.51896 4.66414 4.69047 4.90901 5.06274 5.21694 5.27632 5.36075 5.38230 5.48353 5.60485 5.76966 5.81791 5.85619 5.89129 6.01633 6.08957 6.13294 6.22387 6.32445 6.41448 6.70179 6.81838 7.02881 7.53596 7.68593 7.88547 8.57803 9.25820 9.51848 10.72572 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033921 B = 0.004515 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.241975 B = 6199.997560 C = 6520.802213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.080 4.080 4 H 0.081 0.919 5 C -0.181 4.181 6 C -0.639 4.639 7 S 2.618 3.382 8 O -0.960 6.960 9 O -0.959 6.959 10 N -1.028 6.028 11 C 0.129 3.871 12 C 0.245 3.755 13 O -0.572 6.572 14 C -0.539 4.539 15 H 0.071 0.929 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.907 3.093 19 H -0.285 1.285 20 H -0.275 1.275 21 H -0.274 1.274 22 C 0.103 3.897 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.391 0.609 36 H 0.273 0.727 37 H 0.077 0.923 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 -7.954 -3.721 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.100 4.100 4 H 0.100 0.900 5 C -0.238 4.238 6 C -0.766 4.766 7 S 2.714 3.286 8 O -0.951 6.951 9 O -0.949 6.949 10 N -0.869 5.869 11 C 0.004 3.996 12 C 0.201 3.799 13 O -0.383 6.383 14 C -0.578 4.578 15 H 0.089 0.911 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.734 3.266 19 H -0.211 1.211 20 H -0.200 1.200 21 H -0.199 1.199 22 C -0.023 4.023 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.246 0.754 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.667 -7.065 -4.089 15.069 hybrid contribution 1.245 -1.359 0.680 1.964 sum -11.422 -8.424 -3.409 14.596 Atomic orbital electron populations 1.21865 0.95671 1.01681 1.02198 1.21530 0.95894 0.95151 1.02423 1.20880 0.90897 0.98663 0.99545 0.90044 1.22341 1.02546 1.02186 0.96726 1.30940 1.05582 1.28938 1.11169 1.04753 0.72609 0.77165 0.74104 1.93550 1.81751 1.75360 1.44450 1.93526 1.84670 1.69680 1.47071 1.60214 1.19364 1.88229 1.19046 1.23043 0.82414 1.00106 0.94066 1.19846 0.90751 0.80534 0.88727 1.86055 1.76030 1.20742 1.55512 1.21533 1.00152 1.23946 1.12151 0.91129 1.25087 0.98894 0.94562 0.94569 1.69410 1.37149 1.32243 1.14786 0.86410 0.82766 0.79622 0.77776 1.21057 1.20002 1.19909 1.23886 0.86888 1.00744 0.90739 0.92257 0.92667 0.92551 0.91610 0.91676 0.90615 0.91599 0.91307 0.85396 0.85427 0.90730 0.90009 0.75399 0.91627 0.90527 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.67 37.16 0.36 -0.94 16 2 C -0.11 -1.08 5.40 -26.73 -0.14 -1.22 16 3 C -0.08 -0.95 2.39 -90.62 -0.22 -1.16 16 4 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 5 C -0.18 -2.12 8.64 37.16 0.32 -1.80 16 6 C -0.64 -8.29 5.62 37.16 0.21 -8.08 16 7 S 2.62 47.44 5.58 -107.50 -0.60 46.84 16 8 O -0.96 -20.40 18.02 -57.54 -1.04 -21.43 16 9 O -0.96 -19.25 15.77 -57.54 -0.91 -20.16 16 10 N -1.03 -20.68 4.00 -118.50 -0.47 -21.15 16 11 C 0.13 2.64 8.31 -2.96 -0.02 2.61 16 12 C 0.25 5.91 1.40 -90.84 -0.13 5.78 16 13 O -0.57 -15.04 13.49 -35.23 -0.48 -15.51 16 14 C -0.54 -13.38 8.61 -34.44 -0.30 -13.68 16 15 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 17 N -0.90 -22.96 11.20 55.43 0.62 -22.34 16 18 Si 0.91 19.34 29.54 -169.99 -5.02 14.32 16 19 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 C 0.10 2.26 8.32 -2.84 -0.02 2.24 16 23 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.04 5.61 -51.93 -0.29 0.75 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.66 6.56 -51.93 -0.34 0.32 16 31 H 0.13 1.45 8.14 -51.92 -0.42 1.03 16 32 H 0.13 1.49 8.14 -51.92 -0.42 1.07 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 35 H 0.39 10.37 6.60 45.56 0.30 10.67 16 36 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 38 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -30.03 321.72 -8.37 -38.40 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.29 Total: 10.75 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -0.04 Total: -14.56 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.15 Total: -43.50 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -2.42 Total: -57.10 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Atomic # 16 Polarization: 47.44 SS G_CDS: -0.60 Total: 46.84 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.03 -8.37 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189065381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.489 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds